Clone Sequence Records
BO05510.3prime Sequence
942 bp (819 high quality bases) assembled on 2005-12-02
> BO05510.3prime
ATGGTCTAGAAAGCTTGCCATAATTGAGCAGATGGATCGGCCCTCGGCAG
CGACCGCGGCAACATCAGCCACCTCTACAACAGGGTCAATGTTTTCTCCA
TCGCTGGACTCCTTGTCGCCATCCTGGCCATTGACGTTCTTATCCTCGAC
ATCCTTCTTGGCGGGGATTTCCTCCGCTCCGGCCTCCTGACCAACGGTCA
CGTCTTCGGCCGGTTGTTCCTCCTCCACATCAACCTCTTCTGGTACGCCA
GTCGTAGATGTGTTCAGATGTTGCTCCTCCACGCCGGAACTGTTCGGCTC
CAGACGCAGACGGGTCGGAGTACCGATTGTTGCCTTGGAGAATCTCGAGC
GCAGCAAGCTAAAGGGAGAAGCCAAATTCAGGCTGAACAAGTCGAAGCGG
GCGCGCTTTGGCGGCGACATATCCACGTCGTGGCCCAGGTCACTGGTCGA
CTGAGAGGCCGTCAGTGGTGGGGGAGTGCGTTCACGCTTGCGGCCACGGC
CAAAGAATGAAAATGAAAATGACGAGCTGTTGGGGATCTCTGATCCGACT
GTGGCATTCATGCTTGCGTTCGTGCAGTTCGAGGTGTCCAGATCGCTGTT
CCCGCACCTGTAGGTGCCTATTTTCGAGGGCGTCAGTGAGTCGATGGGTC
GTATGCTACGCCTGCCGCTGATCTGGGCGAAAGTGCGAGCCGGAGTTCCT
GCCGGCGAGCTGGAAGTCTGGGCAGCCAGCTCTACCTCGGTGCTTTGCTT
GTTGCTACCACGGAAACTGAAGAGACTGCGTCCGGGCGTGGATGTAGCCG
TCGGCACGGCATTCAAATTGCCGTGGACGCTGCGTATGGGAGAAGCATCC
ACTTGTAGCGGTTCCATATCGACATCTTCTTGTGGAGTCAAAGAGCCCGA
TGTCGATGAAGAAACTGCTTCGGTTTTTATCTTCTGGACAGG
BO05510.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5175-PA | 1713 | kuk-RA | 787..1710 | 942..19 | 4595 | 99.8 | Minus |
| CG5175-PB | 1713 | kuk-RB | 787..1710 | 942..19 | 4595 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 902..1825 | 942..19 | 4605 | 99.9 | Minus |
| kuk-RB | 2238 | CG5175-RB | 940..1863 | 942..19 | 4605 | 99.9 | Minus |
| kuk-RA | 2231 | CG5175-RA | 933..1856 | 942..19 | 4605 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17083483..17084406 | 942..19 | 4605 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:41:46 has no hits.
BO05510.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:50 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-PB | 787..1713 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:18 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5175-PB | 787..1713 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:30 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 933..1859 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:25 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 933..1859 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:25 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17083483..17084409 | 15..942 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:30 Download gff for
BO05510.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12909205..12910131 | 15..942 | 99 | | Minus |
BO05510.5prime Sequence
862 bp (784 high quality bases) assembled on 2005-12-02
> BO05510.5prime
GAAGTTATCAGTCGACATGTTAAGCAAAATGGCTAGCAACACAAGCGGCG
GGGGAGGTACCACTTCAGGCACTGGAACGGGACGTCGTCTGCCACTCTCG
CTGAGCGGCGGTTCCACCGTCACGCGCTTGCAGCAATCTTCTGGCAGCAA
CGGCCGCTCAAATAGCCCCCAAAATGGGAACAAAAAGATCACAGAGTCAT
TTTTGCCGGTAAAAAAGAGCAACCAACCGCGGACCACTTCGACTGGATCC
ACCGGATCCAGCCAGAACGGCGTAAGCAAGCCCACAAATGGCAAAGATAA
GTCACAGAATGGCAGCTCAACAGGCAAAGACCAGAAGGTAGAGAAATCTA
AAGATAAGTTGCCGGAAAAGAAGGCAAAGGAAGTGGGTGCCGAGAATAAG
GATAAGGATGGCGCTGCCGAGATGACAGATATGGAGGTTGTGGTCGAAAA
TAAGCAAAAGGAGGTGGTATCCGAAAATAAGCAAAATGAGGTGGTATCTG
AAAATAAGGAAGTGGTATCTGAAAATAAGGAGGTGGTATCCGAAAATAAG
GAGGTGGCTTCCGAAAAAAAGGTGGTGGTAGCTGAAGTTCCCTCCGACAA
AGACGACAACGGAGAGACCAAAAAAGATGATGCTACCGTTGAGAGTACTG
CTCCTGCTTCTCAAACGCCTGCGGATGCTGCGGTAATCATCGATGAAGTA
GTGTTTATTCCCGATCTCAGCACTCCTACTAAGGATCGCAAGTCTACACG
CAAGTCGGGTAGCCAGCAAAAGTCACCCATCAGCAAGGGCAGCAACGCTT
CGCCTGTCCAGAAGATAAAAACCGAAGCAGTTTCTTCATCGACATCGGGC
TCTTTGACTCCA
BO05510.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5175-PA | 1713 | kuk-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
| CG5175-PB | 1713 | kuk-RB | 1..846 | 17..862 | 4180 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 116..961 | 17..862 | 4200 | 99.8 | Plus |
| kuk-RB | 2238 | CG5175-RB | 154..999 | 17..862 | 4200 | 99.8 | Plus |
| kuk-RA | 2231 | CG5175-RA | 147..992 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17082697..17083542 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:20:02 has no hits.
BO05510.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:23:51 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-PB | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:19 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5175-PB | 1..845 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:16 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 141..991 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:38 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 141..991 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:38 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17082691..17083541 | 9..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:16 Download gff for
BO05510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12908413..12909263 | 9..861 | 99 | | Plus |
BO05510.complete Sequence
1744 bp (1744 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630070
> BO05510.complete
GAAGTTATCAGTCGACATGTTAAGCAAAATGGCTAGCAACACAAGCGGCG
GGGGAGGTACCACTTCAGGCACTGGAACGGGACGTCGTCTGCCACTCTCG
CTGAGCGGCGGTTCCACCGTCACGCGCTTGCAGCAATCTTCTGGCAGCAA
CGGCCGCTCAAATAGCCCCCAAAATGGGAACAAAAAGATCACAGAGTCAT
TTTTGCCGGTAAAAAAGAGCAACCAACCGCGGACCACTTCGACTGGATCC
ACCGGATCCAGCCAGAACGGCGTAAGCAAGCCCACAAATGGCAAAGATAA
GTCACAGAATGGCAGCTCAACAGGCAAAGACCAGAAGGTAGAGAAATCTA
AAGATAAGTTGCCGGAAAAGAAGGCAAAGGAAGTGGGTGCCGAGAATAAG
GATAAGGATGGCGCTGCCGAGATGACAGATATGGAGGTTGTGGTCGAAAA
TAAGCAAAAGGAGGTGGTATCCGAAAATAAGCAAAATGAGGTGGTATCTG
AAAATAAGGAAGTGGTATCTGAAAATAAGGAGGTGGTATCCGAAAATAAG
GAGGTGGCTTCCGAAAAAAAGGTGGTGGTAGCTGAAGTTCCCTCCGACAA
AGACGACAACGGAGAGACCAAAAAAGATGATGCTACCGTTGAGAGTACTG
CTCCTGCTTCTCAAACGCCTGCGGATGCTGCGGTAATCATCGATGAAGTA
GTGTTTATTCCCGATCTCAGCACTCCTACTAAGGATCGCAAGTCTACACG
CAAGTCGGGTAGCCAGCAAAAGTCACCCATCAGCAAGGCAAGCAACGCTT
CGCCTGTCCAGAAGATAAAAACCGAAGCAGTTTCTTCATCGACATCGGGC
TCTTTGACTCCACAAGAAGATGTCGATATGGAACCGCTACAAGTGGATGC
CTCTCCCATACGCAGCGTCCACGGCAATTTGAATGCCGTGCCGACGGCTA
CATCCACGCCCGGACGCAGTCTCTTCAGTTTCCGTGGTAGCAACAAGCAA
AGCACCGAGGTAGAGCTGGCTGCCCAGACTTCCAGCTCGCCGGCAGGAAC
TCCGGCTCGCACTTTCGCCCAGATCAGCGGCAGGCGTAGCATACGACCCA
TCGACTCACTGACGCCCTCGAAAATAGGCACCTACAGGTGCGGGAACAGC
GATCTGGACACCTCGAACTGCACGAACGCAAGCATGAATGCCACAGTCGG
ATCAGAGATCCCCAACAGCTCGTCATTTTCATTTTCATTCTTTGGCCGTG
GCCGCAAGCGTGAACGCACTCCCCCACCACTGACGGCCTCTCAGTCGACC
AGTGACCTGGGCCACGACGTGGATATGTCGCCGCCAAAGCGCGCCCGCTT
CGACTTGTTCAGCCTGAATTTGGCTTCTCCCTTTAGCTTGCTGCGCTCGA
GATTCTCCAAGGCAACAATCGGTACTCCGACCCGTCTGCGTCTGGAGCCG
AACAGTTCCGGCGTGGAGGAGCAACATCTGAACACATCTACGACTGGCGT
ACCAGAAGAGGTTGATGTGGAGGAGGAACAACCGGCCGAAGACGTGACCG
TTGGTCAGGAGGCCGGAGCGGAGGAAATCCCCGCCAAGAAGGATGTCGAG
GATAAGAACGTCAATGGCCAGGATGGCGACAAGGAGTCCAGCGATGGAGA
AAACATTGACCCTGTTGTAGAGGTGGCTGATGTTGCCGCGGTCGCTGCCG
AGGGCCGATCCATCTGCTCAATTATGGCAAGCTTTCTAGACCAT
BO05510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 1713 | CG5175-PC | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| kuk-RB | 1713 | CG5175-PB | 1..1710 | 17..1726 | 8550 | 100 | Plus |
| kuk-RA | 1713 | CG5175-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-RC | 2200 | CG5175-RC | 116..1825 | 17..1726 | 8550 | 100 | Plus |
| kuk-RB | 2238 | CG5175-RB | 154..1863 | 17..1726 | 8550 | 100 | Plus |
| kuk-RA | 2231 | CG5175-RA | 147..1856 | 17..1726 | 8550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17082697..17084406 | 17..1726 | 8550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:01:57 has no hits.
BO05510.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:44 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 1..1713 | 17..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:49 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 146..1864 | 9..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:23 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 152..1856 | 22..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:44 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RB | 146..1864 | 9..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:48 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kuk-RA | 152..1856 | 22..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:48 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17082702..17084406 | 22..1728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:23 Download gff for
BO05510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12908424..12910128 | 22..1728 | 99 | | Plus |
BO05510.pep Sequence
Translation from 16 to 1744
> BO05510.pep
MLSKMASNTSGGGGTTSGTGTGRRLPLSLSGGSTVTRLQQSSGSNGRSNS
PQNGNKKITESFLPVKKSNQPRTTSTGSTGSSQNGVSKPTNGKDKSQNGS
STGKDQKVEKSKDKLPEKKAKEVGAENKDKDGAAEMTDMEVVVENKQKEV
VSENKQNEVVSENKEVVSENKEVVSENKEVASEKKVVVAEVPSDKDDNGE
TKKDDATVESTAPASQTPADAAVIIDEVVFIPDLSTPTKDRKSTRKSGSQ
QKSPISKASNASPVQKIKTEAVSSSTSGSLTPQEDVDMEPLQVDASPIRS
VHGNLNAVPTATSTPGRSLFSFRGSNKQSTEVELAAQTSSSPAGTPARTF
AQISGRRSIRPIDSLTPSKIGTYRCGNSDLDTSNCTNASMNATVGSEIPN
SSSFSFSFFGRGRKRERTPPPLTASQSTSDLGHDVDMSPPKRARFDLFSL
NLASPFSLLRSRFSKATIGTPTRLRLEPNSSGVEEQHLNTSTTGVPEEVD
VEEEQPAEDVTVGQEAGAEEIPAKKDVEDKNVNGQDGDKESSDGENIDPV
VEVADVAAVAAEGRSICSIMASFLDH
BO05510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kuk-PC | 570 | CG5175-PC | 1..570 | 1..570 | 2854 | 100 | Plus |
| kuk-PB | 570 | CG5175-PB | 1..570 | 1..570 | 2854 | 100 | Plus |
| kuk-PA | 570 | CG5175-PA | 1..570 | 1..570 | 2854 | 100 | Plus |
| Muc68Ca-PA | 3135 | CG18331-PA | 773..1341 | 6..565 | 171 | 20.4 | Plus |
| Muc68Ca-PA | 3135 | CG18331-PA | 693..1261 | 6..565 | 165 | 20.4 | Plus |
