Clone Sequence Records
BO05522.3prime Sequence
858 bp (851 high quality bases) assembled on 2005-12-02
> BO05522.3prime
ATGGTCTAGAAAGCTTGCGTTATTGGCCGCCATTGGCTTGCCGAGGACAC
GCATGGCATTGGAGTAGTCCGAATCGATCTGCGGAATGATCTGCTGTTCG
TTGGGCCGCAGGGTGCGTATCAGATCGTTGAGTGACAGGGAGGATTGGGG
GGTCAGCTCCTCCTTGGGCTGCAGCTCCTGGGAGCTGGCCATTTTCTGGA
AGTCCTGGGCGATCTGCTTGATGCGCTCCTCGATGGCGGCGGCTGGGGAT
TCAGTGGAGCTGGGCATCGCCAATGGTTCGTTGGCCTTGATAAGATCCAC
CGGCGTCTCATTTTCCAAGTCAGTCTCGCCCTCAGCTCCATCCTGCTCGT
GCTCTCCATCCGCCTCCGCATCGTGTTGCGAGCTCTCGTTATCCTCAGCC
GCCGCGGGAGCTGGTGCCGAGTCCGCATCCGCATCCTCCTGCTGCAACTG
CTGCTGTACCTCTTCGATCGAATGCACCTCGGGGTGGAGTTCGTTGTCGC
TCAGTGGGAATACGTGCTCCTTGATATCGCCATCGTTGTCGTTGCTCAGC
TCACGGGCATGCTCCTCGAAGTTGTCGTGCTCGTCATGCTCCTCTTCGCC
CTCGGCCTCATGGTCATCGTGCTCCTCGCCATCCAAATCCGCTTCCTGAT
CCTCCACATCCACGTCAGTGGAATCCGTATCGGGCAGCGAGCGATCATGG
TTCAGCTTAAAGGACATAAACGAGGGTTGCTGCTGGGAGCTGGAATCATC
GATCAGTCGGTGGCCAACGGCTGGCGAAGATTTGGCCTTGGCAGCGGTGT
ACATTGCTCCACTGGTGGACATCAGCAGGGGCAAGGGTGTGGTGGTGGCG
GCCACATG
BO05522.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4844-PA | 852 | CG4844-RA | 10..849 | 858..19 | 4200 | 100 | Minus |
CG4844-PB | 852 | CG4844-RB | 10..849 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 863..1702 | 858..19 | 4200 | 100 | Minus |
CG43164-RC | 2338 | CG43164-RC | 1189..2028 | 858..19 | 4200 | 100 | Minus |
CG43164-RB | 2447 | CG43164-RB | 1298..2137 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507496..17508335 | 858..19 | 4200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:53:57 has no hits.
BO05522.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:10 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 10..852 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:47 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 10..852 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:19 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1298..2142 | 13..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:49 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1298..2142 | 13..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:49 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507496..17508340 | 13..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:19 Download gff for
BO05522.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13395001..13395845 | 13..858 | 99 | | Minus |
BO05522.5prime Sequence
881 bp (802 high quality bases) assembled on 2005-12-02
> BO05522.5prime
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACGCAAGCTTTCTAGACC
BO05522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4844-PA | 852 | CG4844-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG4844-PB | 852 | CG4844-RB | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 854..1702 | 17..865 | 4245 | 100 | Plus |
CG43164-RC | 2338 | CG43164-RC | 1180..2028 | 17..865 | 4245 | 100 | Plus |
CG43164-RB | 2447 | CG43164-RB | 1289..2137 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507487..17508335 | 17..865 | 4245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:42:07 has no hits.
BO05522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:12 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:48 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-PB | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:34 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2142 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:28 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2142 | 17..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:28 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507487..17508340 | 17..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:34 Download gff for
BO05522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13394992..13395845 | 17..871 | 99 | | Plus |
BO05522.complete Sequence
883 bp (883 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630071
> BO05522.complete
GAAGTTATCAGTCGACATGAACCTGCATGTGGCCGCCACCACCACACCCT
TGCCCCTGCTGATGTCCACCAGTGGAGCAATGTACACCGCTGCCAAGGCC
AAATCTTCGCCAGCCGTTGGCCACCGACTGATCGATGATTCCAGCTCCCA
GCAGCAACCCTCGTTTATGTCCTTTAAGCTGAACCATGATCGCTCGCTGC
CCGATACGGATTCCACTGACGTGGATGTGGAGGATCAGGAAGCGGATTTG
GATGGCGAGGAGCACGATGACCATGAGGCCGAGGGCGAAGAGGAGCATGA
CGAGCACGACAACTTCGAGGAGCATGCCCGTGAGCTGAGCAACGACAACG
ATGGCGATATCAAGGAGCACGTATTCCCACTGAGCGACAACGAACTCCAC
CCCGAGGTGCATTCGATCGAAGAGGTACAGCAGCAGTTGCAGCAGGAGGA
TGCGGATGCGGACTCGGCACCAGCTCCCGCGGCGGCTGAGGATAACGAGA
GCTCGCAACACGATGCGGAGGCGGATGGAGAGCACGAGCAGGATGGAGCT
GAGGGCGAGACTGACTTGGAAAATGAGACGCCGGTGGATCTTATCAAGGC
CAACGAACCATTGGCGATGCCCAGCTCCACTGAATCCCCAGCCGCCGCCA
TCGAGGAGCGCATCAAGCAGATCGCCCAGGACTTCCAGAAAATGGCCAGC
TCCCAGGAGCTGCAGCCCAAGGAGGAGCTGACCCCCCAATCCTCCCTGTC
ACTCAACGATCTGATACGCACCCTGCGGCCCAACGAACAGCAGATCATTC
CGCAGATCGATTCGGACTACTCCAATGCCATGCGTGTCCTCGGCAAGCCA
ATGGCGGCCAATAACGCAAGCTTTCTAGACCAT
BO05522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 1473 | CG43164-PE | 622..1470 | 17..865 | 4245 | 100 | Plus |
CG43164-RC | 1476 | CG43164-PC | 625..1473 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-RE | 2012 | CG43164-RE | 854..1702 | 17..865 | 4245 | 100 | Plus |
CG43164-RC | 2338 | CG43164-RC | 1180..2028 | 17..865 | 4245 | 100 | Plus |
CG43164-RB | 2447 | CG43164-RB | 1289..2137 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17507487..17508335 | 17..865 | 4245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:56:19 has no hits.
BO05522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:19 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4844-RB | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:30 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18431-RA | 1241..2094 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:14 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2137 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:19 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18431-RA | 1241..2094 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:08 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43164-RB | 1289..2137 | 17..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:08 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17507487..17508335 | 17..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:14 Download gff for
BO05522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13394992..13395840 | 17..867 | 99 | | Plus |
BO05522.pep Sequence
Translation from 16 to 883
> BO05522.pep
MNLHVAATTTPLPLLMSTSGAMYTAAKAKSSPAVGHRLIDDSSSQQQPSF
MSFKLNHDRSLPDTDSTDVDVEDQEADLDGEEHDDHEAEGEEEHDEHDNF
EEHARELSNDNDGDIKEHVFPLSDNELHPEVHSIEEVQQQLQQEDADADS
APAPAAAEDNESSQHDAEADGEHEQDGAEGETDLENETPVDLIKANEPLA
MPSSTESPAAAIEERIKQIAQDFQKMASSQELQPKEELTPQSSLSLNDLI
RTLRPNEQQIIPQIDSDYSNAMRVLGKPMAANNASFLDH
BO05522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43164-PE | 490 | CG43164-PE | 208..490 | 1..283 | 1454 | 100 | Plus |
CG43164-PC | 491 | CG43164-PC | 209..491 | 1..283 | 1454 | 100 | Plus |