Clone BO05525 Report

Search the DGRC for BO05525

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG9339-RA
Protein status:BO05525.pep: validated full length
Sequenced Size:1795

Clone Sequence Records

BO05525.3prime Sequence

965 bp (830 high quality bases) assembled on 2005-12-02

> BO05525.3prime
ATGGTCTAGAAAGCTTGCGATGCCCACGAATCCGTAGACTTCCAGCACCC
GAATCTCGAAGTCGCCCGACGGACACAGCGGCGGATTGTTAAAGGTCTTG
CAGCTGTCCGTCTTTCCGAAACGAATGTTCTCGTCCATCCAGATGGCCTG
CCCCTCGCCGCCACCAATAGTGATCATCTTGGAGTCGGCCGCCATAAATA
GTTCGGAGCTGTGTCCCAGGTCCTTGTCGCCCTCAATGCCCACCCATGGG
TACTTGGCTCTTTCTGGATATAGGGAGAACAAAAAGGTTTCGCCCGTACC
GAAGTAGGCCTGTCGCTGGCCCTTGTCATCTTTTACATTTCTTTCAAACC
AGCGCGAAGAGCAGTAGGCACCAAATACCTCATTATTGCACGTCTTGATC
ATGAGCAGCGTGGGTTCATGCTGCTCCACCCGAACGTAGAACGTGGTTAG
TGAGCAGCCGTGCTCCTCCGTGGTGTAGAGCAGCACCGGTTGGTACATTG
TTATCCGCACGGGCAGCCAGGACCACAGCGTGAACAGAAATTGTCTATCC
GTCCAGGTTTTTATGAAATTCTTTGTGCCCGGCAAACCAAAATGCTCTCG
GATGGTCAGGGTGTGGGACATCATTTGGATGTTGACCTGCGACTGACTAG
TGGGCAGATTATCACTTGAACGCGATTTGATTAATTGCTTCGAACCGCTG
GTGAGCACGGAGCGGCTTTTTAGTAGCATTTCAGTCTTGATAAATATTCT
AGAAATATACTGGGTACTCAGTCCCCTAATACTAAACGCGGCATGGAGCA
ACTTCGCCGGCGACACTGGTATCTTCTTGCAGAACTTGATCAAAGCGTTG
CCAATGTCGTTTTTTATGTTGTCCGGACTCCATTCGTTGTTCGACTGGCA
CTCCTTGTGAAACAGGGTGAGTATGACGAGGGGCACGCGGTACAGGACCT
TGATGCCCTCGTGGA

BO05525.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9339-PB 1764 CG9339-RB 815..1761 965..19 4660 99.6 Minus
CG9339-PC 1779 CG9339-RC 830..1776 965..19 4660 99.6 Minus
CG9339-PH 1764 CG9339-RH 815..1761 965..19 4660 99.6 Minus
CG9339-PA 1764 CG9339-RA 815..1761 965..19 4660 99.6 Minus
CG9339-PE 1707 CG9339-RE 1186..1704 537..19 2595 100 Minus
CG9339-PF 1722 CG9339-RF 1201..1719 537..19 2595 100 Minus
CG9339-PD 1707 CG9339-RD 1186..1704 537..19 2595 100 Minus
CG9339-PG 1707 CG9339-RG 1186..1704 537..19 2595 100 Minus
CG9339-PE 1707 CG9339-RE 815..1186 965..594 1785 99.1 Minus
CG9339-PF 1722 CG9339-RF 830..1201 965..594 1785 99.1 Minus
CG9339-PD 1707 CG9339-RD 815..1186 965..594 1785 99.1 Minus
CG9339-PG 1707 CG9339-RG 815..1186 965..594 1785 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RA 4920 CG9339-RA 1557..2503 965..19 4690 99.7 Minus
sky-RH 5080 CG9339-RH 1717..2663 965..19 4690 99.7 Minus
sky-RC 4758 CG9339-RC 1395..2341 965..19 4690 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20873957..20874179 158..380 1115 100 Plus
2L 23513712 2L 20877149..20877347 767..965 950 98.5 Plus
2L 23513712 2L 20876912..20877085 595..768 870 100 Plus
2L 23513712 2L 20874271..20874432 376..537 810 100 Plus
2L 23513712 2L 20873752..20873891 19..158 700 100 Plus
2L 23513712 2L 20875080..20875138 538..596 295 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:41:26 has no hits.

BO05525.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:18 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PA 816..1764 15..964 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:55 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PA 816..1764 15..964 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:03 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
sky-RC 1396..2344 15..964 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:52:45 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
sky-RC 1396..2344 15..964 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:52:45 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20873748..20873890 15..157 98 <- Plus
2L 20873957..20874177 158..378 100 <- Plus
2L 20874274..20874432 379..537 100 <- Plus
2L 20875080..20875136 538..594 100 <- Plus
2L 20876912..20877083 595..766 100 <- Plus
2L 20877149..20877346 767..964 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:03 Download gff for BO05525.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20873748..20873890 15..157 98 <- Plus
arm_2L 20873957..20874177 158..378 100 <- Plus
arm_2L 20874274..20874432 379..537 100 <- Plus
arm_2L 20875080..20875136 538..594 100 <- Plus
arm_2L 20876912..20877083 595..766 100 <- Plus
arm_2L 20877149..20877346 767..964 98   Plus

BO05525.5prime Sequence

887 bp (832 high quality bases) assembled on 2005-12-02

> BO05525.5prime
GAAGTTATCAGTCGACATGCCATACCATCGAGGCGGAGATGCCTCTTCCC
AGGCCGACAAGCTGAGCGGCATCGTGGAGGAGAGCGATCTGTACGAAGGG
TTCGCCCCGCATGTCGAGACGTCCGAGATCAAAACCCTCGACTTCTACAA
TTTACCAAAGCAAACTGGCAAGGAACCGGCACTGCGCTCCTACACGGAAA
TCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAACATACTC
AGGGAGAACTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGCTATGGCC
GATGTTGTGTGGCCAGCACCAGACCAAACAGCAAATGCTAGATGGCTTCT
ACTGGGAGATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTCGGAGAAG
CCGATCATGCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGCCCTACCA
CTTGACCAGCACGGGACGAGCCGTGGCCGATCGCATCGTGAATGTCCTGG
GCTACGACTGCCCCGATATTACCTACAGTCCAGTATTGTATCCCATTACA
TCGATACTTTTGCATTTCATGTCGGAGGAGGAGGCGTACATATGTCTGGC
CGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCAATCAAACCAAACTAC
AGCACGAAGTCACTTGGAAGACGGTGATGCAGATAGCCAAAAAGCACACA
AAAAGTGCTACTTCGTATTTCCAACGTATTTGCCCGGGCCTGAAGCTAGA
ACGCATCTTCATGGACTGGTGCTGGTGGATTCTAGCCGGTCTACCCTTCC
AGCATCTGGTGCGGATCATGGACTGCTACTTCCACGAGGGCATCAAGGTC
CTGTACCGCGTGGCCCTCGTCATACTCAACCTGGTTC

BO05525.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9339-PB 1764 CG9339-RB 1..867 17..883 4335 100 Plus
CG9339-PE 1707 CG9339-RE 1..867 17..883 4335 100 Plus
CG9339-PD 1707 CG9339-RD 1..867 17..883 4335 100 Plus
CG9339-PH 1764 CG9339-RH 1..867 17..883 4335 100 Plus
CG9339-PG 1707 CG9339-RG 1..867 17..883 4335 100 Plus
CG9339-PA 1764 CG9339-RA 1..867 17..883 4335 100 Plus
CG9339-PC 1779 CG9339-RC 166..882 167..883 3585 100 Plus
CG9339-PF 1722 CG9339-RF 166..882 167..883 3585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG43739-RA 4863 CG43739-RA 743..1613 17..887 4340 99.9 Plus
sky-RL 4921 CG9339-RL 687..1557 17..887 4340 99.9 Plus
sky-RK 5158 CG9339-RK 951..1821 17..887 4340 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20881987..20882194 575..368 1040 100 Minus
2L 23513712 2L 20882260..20882465 372..167 1030 100 Minus
2L 23513712 2L 20877291..20877477 887..701 920 99.5 Minus
2L 23513712 2L 20903015..20903166 168..17 760 100 Minus
2L 23513712 2L 20877553..20877678 700..575 630 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:51:59 has no hits.

BO05525.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:18 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PH 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:46:56 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9339-PE 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:08 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
sky-RJ 760..1635 10..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:28 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
sky-RK 946..1821 10..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:28 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20877291..20877477 701..887 99 <- Minus
2L 20877553..20877677 576..700 100 <- Minus
2L 20881987..20882191 371..575 100 <- Minus
2L 20882262..20882464 168..370 100 <- Minus
2L 20903016..20903171 10..167 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:08 Download gff for BO05525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20877291..20877477 701..887 99 <- Minus
arm_2L 20877553..20877677 576..700 100 <- Minus
arm_2L 20881987..20882191 371..575 100 <- Minus
arm_2L 20882262..20882464 168..370 100 <- Minus
arm_2L 20903016..20903171 10..167 97   Minus

BO05525.complete Sequence

1795 bp (1795 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630072

> BO05525.complete
GAAGTTATCAGTCGACATGCCATACCATCGAGGCGGAGATGCCTCTTCCC
AGGCCGACAAGCTGAGCGGCATCGTGGAGGAGAGCGATCTGTACGAAGGG
TTCGCCCCGCATGTCGAGACGTCCGAGATCAAAACCCTCGACTTCTACAA
TTTACCAAAGCAAACTGGCAAGGAACCGGCACTGCGCTCCTACACGGAAA
TCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGACGTGAAGAACATACTC
AGGGAGAACTCGTGGCCCATTAACTCCCCGATCCGAGCCCAGCTATGGCC
GATGTTGTGTGGCCAGCACCAGACCAAACAGCAAATGCTAGATGGCTTCT
ACTGGGAGATGGTTCACCAGGTCTTTGGCACCACGGAGCTGTCGGAGAAG
CCGATCATGCTGCCCGCCTTTGTGGATGCCACCCACTGTTTGCCCTACCA
CTTGACCAGCACGGGACGAGCCGTGGCCGATCGCATCGTGAATGTCCTGG
GCTACGACTGCCCCGATATTACCTACAGTCCAGTATTGTATCCCATTACA
TCGATACTTTTGCATTTCATGTCGGAGGAGGAGGCGTACATATGTCTGGC
CGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCAATCAAACCAAACTAC
AGCACGAAGTCACTTGGAAGACGGTGATGCAGATAGCCAAAAAGCACACA
AAAAGTGCTACTTCGTATTTCCAACGTATTTGCCCGGGCCTGAAGCTAGA
ACGCATCTTCATGGACTGGTGCTGGTGGATTCTAGCCGGTCTACCCTTCC
AGCATCTGGTGCGGATCATGGACTGCTACTTCCACGAGGGCATCAAGGTC
CTGTACCGCGTGGCCCTCGTCATACTCAACCTGTTTCACAAGGAGTGCCA
GTCGAACAACGAATGGAGTCCGGACAACATTAAAAACGACATTGGCAACG
CTTTGATCAAGTTCTGCAAGAAGATACCAGTGTCGCCGGCGAAGTTGCTC
CATGCCGCGTTTAGTATTAGGGGACTGAGTACCCAGTATATTTCTAGAAT
ATTTATCAAGACTGAAATGCTACTAAAAAGCCGCTCCGTGCTCACCAGCG
GTTCGAAGCAATTAATCAAATCGCGTTCAAGTGATAATCTGCCCACTAGT
CAGTCGCAGGTCAACATCCAAATGATGTCCCACACCCTGACCATCCGAGA
GCATTTTGGTTTGCCGGGCACAAAGAATTTCATAAAAACCTGGACGGATA
GACAATTTCTGTTCACGCTGTGGTCCTGGCTGCCCGTGCGGATAACAATG
TACCAACCGGTGCTGCTCTACACCACGGAGGAGCACGGCTGCTCACTAAC
CACGTTCTACGTTCGGGTGGAGCAGCATGAACCCACGCTGCTCATGATCA
AGACGTGCAATAATGAGGTATTTGGTGCCTACTGCTCTTCGCGCTGGTTT
GAAAGAAATGTAAAAGATGACAAGGGCCAGCGACAGGCCTACTTCGGTAC
GGGCGAAACCTTTTTGTTCTCCCTATATCCAGAAAGAGCCAAGTACCCAT
GGGTGGGCATTGAGGGCGACAAGGACCTGGGACACAGCTCCGAACTATTT
ATGGCGGCCGACTCCAAGATGATCACTATTGGTGGCGGCGAGGGGCAGGC
CATCTGGATGGACGAGAACATTCGTTTCGGAAAGACGGACAGCTGCAAGA
CCTTTAACAATCCGCCGCTGTGTCCGTCGGGCGACTTCGAGATTCGGGTG
CTGGAAGTCTACGGATTCGTGGGCATCGCAAGCTTTCTAGACCAT

BO05525.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RA 1764 CG9339-PA 1..1761 17..1777 8805 100 Plus
sky-RH 1764 CG9339-PH 1..1761 17..1777 8805 100 Plus
sky-RB 1764 CG9339-PB 1..1761 17..1777 8805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
sky-RA 4920 CG9339-RA 743..2503 17..1777 8805 100 Plus
sky-RH 5080 CG9339-RH 903..2663 17..1777 8805 100 Plus
sky-RB 5128 CG9339-RB 951..2711 17..1777 8805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20877149..20877477 1029..701 1645 100 Minus
2L 23513712 2L 20873957..20874179 1638..1416 1115 100 Minus
2L 23513712 2L 20881987..20882194 575..368 1040 100 Minus
2L 23513712 2L 20882260..20882465 372..167 1030 100 Minus
2L 23513712 2L 20876912..20877085 1201..1028 870 100 Minus
2L 23513712 2L 20874271..20874432 1420..1259 810 100 Minus
2L 23513712 2L 20903015..20903166 168..17 760 100 Minus
2L 23513712 2L 20873752..20873891 1777..1638 700 100 Minus
2L 23513712 2L 20877553..20877678 700..575 630 100 Minus
2L 23513712 2L 20875080..20875138 1258..1200 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:31:56 has no hits.

BO05525.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:33 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RA 1..1764 17..1781 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:00 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RA 740..2500 17..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:54 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
sky-RB 951..2711 17..1779 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:34 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
CG9339-RA 735..2503 10..1781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:01 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
sky-RB 951..2711 17..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:01 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20882262..20882464 168..370 100 <- Minus
2L 20903016..20903166 17..167 100   Minus
2L 20873750..20873890 1639..1779 98 <- Minus
2L 20873957..20874177 1418..1638 100 <- Minus
2L 20874274..20874432 1259..1417 100 <- Minus
2L 20875080..20875136 1202..1258 100 <- Minus
2L 20876912..20877083 1030..1201 100 <- Minus
2L 20877149..20877477 701..1029 100 <- Minus
2L 20877553..20877677 576..700 100 <- Minus
2L 20881987..20882191 371..575 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:54 Download gff for BO05525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20882262..20882464 168..370 100 <- Minus
arm_2L 20903016..20903166 17..167 100   Minus
arm_2L 20873750..20873890 1639..1779 98 <- Minus
arm_2L 20873957..20874177 1418..1638 100 <- Minus
arm_2L 20874274..20874432 1259..1417 100 <- Minus
arm_2L 20875080..20875136 1202..1258 100 <- Minus
arm_2L 20876912..20877083 1030..1201 100 <- Minus
arm_2L 20877149..20877477 701..1029 100 <- Minus
arm_2L 20877553..20877677 576..700 100 <- Minus
arm_2L 20881987..20882191 371..575 100 <- Minus

BO05525.pep Sequence

Translation from 16 to 1795

> BO05525.pep
MPYHRGGDASSQADKLSGIVEESDLYEGFAPHVETSEIKTLDFYNLPKQT
GKEPALRSYTEIQQLLQQGKKRDVKNILRENSWPINSPIRAQLWPMLCGQ
HQTKQQMLDGFYWEMVHQVFGTTELSEKPIMLPAFVDATHCLPYHLTSTG
RAVADRIVNVLGYDCPDITYSPVLYPITSILLHFMSEEEAYICLAGLVGS
KEKVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKLERIFMD
WCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQSNNEW
SPDNIKNDIGNALIKFCKKIPVSPAKLLHAAFSIRGLSTQYISRIFIKTE
MLLKSRSVLTSGSKQLIKSRSSDNLPTSQSQVNIQMMSHTLTIREHFGLP
GTKNFIKTWTDRQFLFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVR
VEQHEPTLLMIKTCNNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGETFL
FSLYPERAKYPWVGIEGDKDLGHSSELFMAADSKMITIGGGEGQAIWMDE
NIRFGKTDSCKTFNNPPLCPSGDFEIRVLEVYGFVGIASFLDH

BO05525.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
sky-PA 587 CG9339-PA 1..587 1..587 3146 100 Plus
sky-PH 587 CG9339-PH 1..587 1..587 3146 100 Plus
sky-PB 587 CG9339-PB 1..587 1..587 3146 100 Plus
sky-PK 597 CG9339-PK 1..597 1..587 3014 95.6 Plus
sky-PG 568 CG9339-PG 1..568 1..587 3005 96.8 Plus