Clone Sequence Records
BO05527.3prime Sequence
784 bp (768 high quality bases) assembled on 2005-12-02
> BO05527.3prime
ATGGTCTAGAAAGCTTGCCCAGCGGTTCGTATAGAACTGATTGATGCCAA
GCACATGCTTCTCCTCATGGTACTTTTGAAGGATATGTGTGATGACCGAG
GTTGTGTCGTTGTCGCCACGCCACACGCGTATCGCATGTTCGTTTTCCAG
GATGCCCAGAAATGCCAAAAAAGTCTTTGGATTGCTTAGGGTCATCTGGA
CTTGTGGCATTTCCAGGATCACCTTTAGGATGGGCGAATCGGGCGCCAAG
CCTTCACGCAGTTCAATAACGCTACCCGATCGATTGTCGCACAACCATTC
GCACGCGGACGCCTTGTTGTTGCCAGTTTTCTTCAGTGCCGCGAGCACTG
CCGTCTCCTCGAAGCCCATTTCTGTAAGCGATTCCACAATCTCATCGCTG
GGAGGGGAATCCCGGTGGCTGTAGATTCGTACAATCTCAATCAAGGCAGC
AGTGTTTTCAATGGTTTCATTATTGGTGACAATCGTGGAGGGTGAGATGG
AAGATAGACTGTGCTGCATATTCATGCCCGGCGGTTCCTGTGGATTTTCC
TCGTTTTGGTTCTGTATTAGCCACTCCATCGTGGTCGAGTAAATGCCATT
GTGTGCTTTTAAGGCAAATGCGGCTAGCTCCCGCTTGAAGCCCATGTCCA
CGAGGCATTGCAGCGTATCCGCTTGCTGATTTCGGCGATTGATCAAACGT
TGCTTTAGCATAGCTATCAGGCGTGGAGCATAAGGGCCAGCTCCTATAAC
CGCCGCAGAAGCTTGAGCCAAAGAGATCAACACC
BO05527.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 906..1671 | 784..19 | 3830 | 100 | Minus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 540..1305 | 784..19 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 1055..1820 | 784..19 | 3830 | 100 | Minus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 644..1409 | 784..19 | 3830 | 100 | Minus |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 1043..1808 | 784..19 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671926..19672242 | 784..468 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 19672294..19672597 | 468..165 | 1520 | 100 | Minus |
2R | 25286936 | 2R | 19672660..19672806 | 165..19 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:20:02 has no hits.
BO05527.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:22 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 540..1308 | 16..784 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:01 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PB | 540..1308 | 16..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:56 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1043..1814 | 14..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:58 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1043..1814 | 14..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:58 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19672661..19672812 | 14..164 | 98 | | Minus |
2R | 19671926..19672241 | 469..784 | 100 | -> | Minus |
2R | 19672294..19672597 | 165..468 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:56 Download gff for
BO05527.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15559431..15559746 | 469..784 | 100 | -> | Minus |
arm_2R | 15559799..15560102 | 165..468 | 100 | -> | Minus |
arm_2R | 15560166..15560317 | 14..164 | 98 | | Minus |
BO05527.5prime Sequence
793 bp (709 high quality bases) assembled on 2005-12-02
> BO05527.5prime
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAAAAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACGCAATACTCTGCCGCAGACTGTTTTCACGGATACGTGA
BO05527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11025-PA | 1674 | isopeptidase-T-3-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
CG11025-PB | 1308 | isopeptidase-T-3-RB | 30..397 | 412..779 | 1840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 138..913 | 17..793 | 3860 | 99.9 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 138..925 | 17..793 | 3730 | 98.4 | Plus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 134..514 | 412..793 | 1885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19670755..19671150 | 17..412 | 1980 | 100 | Plus |
2R | 25286936 | 2R | 19671361..19671741 | 412..793 | 1860 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:21:46 has no hits.
BO05527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:22 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PA | 1..775 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:02 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11025-PA | 1..775 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:38:59 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..912 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:44 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..912 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:44 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19670755..19671149 | 17..411 | 100 | -> | Plus |
2R | 19671361..19671740 | 412..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:38:59 Download gff for
BO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558260..15558654 | 17..411 | 100 | -> | Plus |
arm_2R | 15558866..15559245 | 412..792 | 99 | | Plus |
BO05527.complete Sequence
1705 bp (1705 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630073
> BO05527.complete
GAAGTTATCAGTCGACATGATACCCTGGATGCGGGAGAAGTTCAACGAGA
AACGGGCCAAGTGGTTGGCGCGTAGCAAGCGCAGCGGTGGTTCTCCGGCT
GACGAAAGCCCTCGGAGCAGCAGTCATAGCCACAGCCAGCGGACAGACGC
CAGCGATGCGGAGAGCCTGAGCGGATCCTCGTTGAATGTCCACACGGCGG
AATCTGAAACGCAGACGGATGGCGGGATATCCGCTTCCAATTCGCGGCCC
CTTGTGGGCGGGGGCAGTTGCGTCCTAAGGACTCCATCGCCCGCTCGCCG
ACGTCGCATTCACCTTGAGCTACAGCTGCAGCGACGAGAGGAACGTGCTG
AGCATCAGAAGGTGGTGCCACAGGACTCGCCCACGCCCACTCACCAACAG
CAGGCTAATGCGAAATCAGCCCATACAAATCGCCCAGGTAGCTCTACTTC
TGGCGAGGCAGACGATGCCAGCAGGCCAGGTGAATCTATCCTGGTGCGGG
TAATCTGCCCCAGCTCTCGGGTTCTTATCTTCAAAACGGACGTTAATAAG
CGCCTAAACGAGCTGAAGAGTGAGGTGATTCTGGAACTGAGCGACGATCC
CGACTCCATCCAGCTATTTGCCCCAGATGTGCGGCATCTTAATCCGCGAT
ACCGTCTCTATCGGGCGGAATACTTCGGCGGCGAGCTTAACGAGGGCGAC
ACGCTGGCCCAGCTAAAAGTTCGCAACAATGAGACTTTCATACTCTCCCC
ACGACGCAATACTCTGCCGCAGACTGTTTCACGGATACGTGAGGTTCCTG
GCCCAAATGAGCAGCTGGTGGAGAGCGCCACCCGATACGTGCCCGTCAAT
TGCAACCAGCTGCCCACCATCGATATTAATGAAATCTTTCAGCAGTCGAA
TATCCAATACGATGTGCGAAAGGTGTTGATCTCTTTGGCTCAAGCTTCTG
CGGCGGTTATAGGAGCTGGCCCTTATGCTCCACGCCTGATAGCTATGCTA
AAGCAACGTTTGATCAATCGCCGAAATCAGCAAGCGGATACGCTGCAATG
CCTCGTGGACATGGGCTTCAAGCGGGAGCTAGCCGCATTTGCCTTAAAAG
CACACAATGGCATTTACTCGACCACGATGGAGTGGCTAATACAGAACCAA
AACGAGGAAAATCCACAGGAACCGCCGGGCATGAATATGCAGCACAGTCT
ATCTTCCATCTCACCCTCCACGATTGTCACCAATAATGAAACCATTGAAA
ACACTGCTGCCTTGATTGAGATTGTACGAATCTACAGCCACCGGGATTCC
CCTCCCAGCGATGAGATTGTGGAATCGCTTACAGAAATGGGCTTCGAGGA
GACGGCAGTGCTCGCGGCACTGAAGAAAACTGGCAACAACAAGGCGTCCG
CGTGCGAATGGTTGTGCGACAATCGATCGGGTAGCGTTATTGAACTGCGT
GAAGGCTTGGCGCCCGATTCGCCCATCCTAAAGGTGATCCTGGAAATGCC
ACAAGTCCAGATGACCCTAAGCAATCCAAAGACTTTTTTGGCATTTCTGG
GCATCCTGGAAAACGAACATGCGATACGCGTGTGGCGTGGCGACAACGAC
ACAACCTCGGTCATCACACATATCCTTCAAAAGTACCATGAGGAGAAGCA
TGTGCTTGGCATCAATCAGTTCTATACGAACCGCTGGGCAAGCTTTCTAG
ACCAT
BO05527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 1674 | CG11025-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
isopeptidase-T-3-RC | 1686 | CG11025-PC | 1..1683 | 17..1687 | 8200 | 99.3 | Plus |
isopeptidase-T-3-RB | 1308 | CG11025-PB | 30..1305 | 412..1687 | 6380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-RA | 2479 | CG11025-RA | 138..1808 | 17..1687 | 8355 | 100 | Plus |
isopeptidase-T-3-RC | 2491 | CG11025-RC | 138..1820 | 17..1687 | 8200 | 99.3 | Plus |
isopeptidase-T-3-RB | 1778 | CG11025-RB | 134..1409 | 412..1687 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19671361..19671850 | 412..901 | 2450 | 100 | Plus |
2R | 25286936 | 2R | 19670755..19671150 | 17..412 | 1980 | 100 | Plus |
2R | 25286936 | 2R | 19671906..19672242 | 902..1238 | 1685 | 100 | Plus |
2R | 25286936 | 2R | 19672294..19672597 | 1238..1541 | 1520 | 100 | Plus |
2R | 25286936 | 2R | 19672660..19672806 | 1541..1687 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:00:30 has no hits.
BO05527.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:17 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 1..1674 | 17..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:39 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 137..1813 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:03 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..1808 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:17 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 137..1813 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:07 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isopeptidase-T-3-RA | 138..1808 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:07 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19670755..19671149 | 17..411 | 100 | -> | Plus |
2R | 19671361..19671850 | 412..901 | 100 | -> | Plus |
2R | 19671906..19672241 | 902..1237 | 100 | -> | Plus |
2R | 19672294..19672597 | 1238..1541 | 100 | -> | Plus |
2R | 19672661..19672806 | 1542..1689 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:03 Download gff for
BO05527.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15558260..15558654 | 17..411 | 100 | -> | Plus |
arm_2R | 15558866..15559355 | 412..901 | 100 | -> | Plus |
arm_2R | 15559411..15559746 | 902..1237 | 100 | -> | Plus |
arm_2R | 15559799..15560102 | 1238..1541 | 100 | -> | Plus |
arm_2R | 15560166..15560311 | 1542..1689 | 98 | | Plus |
BO05527.pep Sequence
Translation from 16 to 1705
> BO05527.pep
MIPWMREKFNEKRAKWLARSKRSGGSPADESPRSSSHSHSQRTDASDAES
LSGSSLNVHTAESETQTDGGISASNSRPLVGGGSCVLRTPSPARRRRIHL
ELQLQRREERAEHQKVVPQDSPTPTHQQQANAKSAHTNRPGSSTSGEADD
ASRPGESILVRVICPSSRVLIFKTDVNKRLNELKSEVILELSDDPDSIQL
FAPDVRHLNPRYRLYRAEYFGGELNEGDTLAQLKVRNNETFILSPRRNTL
PQTVSRIREVPGPNEQLVESATRYVPVNCNQLPTIDINEIFQQSNIQYDV
RKVLISLAQASAAVIGAGPYAPRLIAMLKQRLINRRNQQADTLQCLVDMG
FKRELAAFALKAHNGIYSTTMEWLIQNQNEENPQEPPGMNMQHSLSSISP
STIVTNNETIENTAALIEIVRIYSHRDSPPSDEIVESLTEMGFEETAVLA
ALKKTGNNKASACEWLCDNRSGSVIELREGLAPDSPILKVILEMPQVQMT
LSNPKTFLAFLGILENEHAIRVWRGDNDTTSVITHILQKYHEEKHVLGIN
QFYTNRWASFLDH
BO05527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isopeptidase-T-3-PA | 557 | CG11025-PA | 1..557 | 1..557 | 2863 | 100 | Plus |
isopeptidase-T-3-PC | 561 | CG11025-PC | 1..561 | 1..557 | 2848 | 99.3 | Plus |
isopeptidase-T-3-PB | 435 | CG11025-PB | 11..435 | 133..557 | 2181 | 100 | Plus |