Clone BO05534 Report

Search the DGRC for BO05534

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptslgA-RF
Protein status:BO05534.pep: Imported from assembly
Sequenced Size:2041

Clone Sequence Records

BO05534.3prime Sequence

891 bp (843 high quality bases) assembled on 2005-12-02

> BO05534.3prime
ATGGTCTAGAAAGCTTGCGATGGGCACGTAATTGCCCTTGGGCTTGTAGA
ACAACTGGCCACGCATCAGACGGCGCCGAATCTCGGAGAGCAGCAGGCGT
TTTTCCTTCTTGATCTTCTTGAGCACACCCTTGTTCTCCTGGGCACGACG
AGACAAGTAGGGCAGCACCTCTTCGACTGGGCCATATGGTATGTACTTGT
ACGCCGAGTATCCCGCTTGACCCAGTGGAAAGGTAATGTAGTCGCACATG
CCCAGCAGTTGGCCGAAGCAGATCACCTTGTCCTCCGGTGAGATGCCGAT
CTCCTTCATCTGCTGGATGGCAAATCGTACGGTGTCTTCGTTGTGCGAGG
CCACCATAATACCAATCTTCCTGGCATCGTCATCACAGTCCTTCATCAGC
TTAATGCGTCGCAAGCACTCCGACAACGTCCTGTGATACATGTCCGTGGT
GGCCTCGAACGTGGGATTTACCGGATCCGGGTAGCCCAGCGACTTGGCAC
GGTCCCGCTCCTGGTCCATATAGGCACCGCGCACCAGCTTGGCGCCGAAG
TAGAAGTTCTGGCGCTTGGCCTGCTCCAGATCGGTGTTCACCTCGCGGAA
CGTCTCGCGCAGATAGCACTGGTACGTATTAAAGACAATGGCCTTGTCCT
TGTTGTACTTGCGCATCATTTCCAGGGTGATACGGGAGATGGCCGGCTGG
AAGTAAGTCTGCTCCGCATCCACCATGATACGCACATCCAAGTCCGCAGC
AGCCTTTACAATCGTGTTGAGACGACGGATCATGTTCCTGAACATCTCCT
CCTCCTTGGGCGGTATTTGTGAGATCAGTCGACGCATCTGTCCGGTTTGG
GGATCGGGAACGCGGAACGTGTCGCTCAGCTGCGAGTCCTC

BO05534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1417-PC 1071 slgA-RC 196..1068 891..19 4365 100 Minus
CG1417-PF 2010 slgA-RF 1135..2007 891..19 4365 100 Minus
CG1417-PG 2010 slgA-RG 1135..2007 891..19 4365 100 Minus
CG1417-PH 2010 slgA-RH 1135..2007 891..19 4365 100 Minus
CG1417-PA 2010 slgA-RA 1135..2007 891..19 4365 100 Minus
CG1417-PD 2046 slgA-RD 1171..2043 891..19 4365 100 Minus
CG1417-PE 2046 slgA-RE 1171..2043 891..19 4365 100 Minus
CG1417-PB 2010 slgA-RB 1135..2007 891..19 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RN 3457 CG1417-RN 1328..2200 891..19 4365 100 Minus
slgA-RM 2551 CG1417-RM 1292..2164 891..19 4365 100 Minus
slgA-RL 3359 CG1417-RL 1230..2102 891..19 4365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21383028..21383383 755..400 1780 100 Minus
X 23542271 X 21383699..21383902 222..19 1020 100 Minus
X 23542271 X 21383448..21383630 401..219 915 100 Minus
X 23542271 X 21382831..21382969 891..753 695 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:42:26 has no hits.

BO05534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:33 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-PE 1171..2046 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:16 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1417-PB 1135..2010 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:38 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RL 1230..2116 5..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:32 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RL 1230..2116 5..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:32 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21382831..21382968 754..891 100 -> Minus
X 21383030..21383383 400..753 100 -> Minus
X 21383450..21383627 222..399 100 -> Minus
X 21383700..21383916 5..221 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:38 Download gff for BO05534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21253858..21253995 754..891 100 -> Minus
arm_X 21254057..21254410 400..753 100 -> Minus
arm_X 21254477..21254654 222..399 100 -> Minus
arm_X 21254727..21254943 5..221 97   Minus

BO05534.5prime Sequence

920 bp (892 high quality bases) assembled on 2005-12-02

> BO05534.5prime
GAAGTTATCAGTCGACATGGCTCTACTCCGTTCGCTGAGCGCCCAACGAA
CAGCCATCAGTTTGGTCTACGGCCGTAATAGCAGCAAGTCGAGCAATTCC
GTGGCCGTCGCCGCCTGCCGGAGTTTCCATCAGCGCGGCAGCGGGAGCAC
CAGCATCGCCGGAGAAGGAGCAGCATCGGAGTCCACGAGAGGAGTCAATG
GAGCGCGCTTCCTGCACAGCGGCGACCGGCCGCTGCAGGCCTCCACTCTG
GTCCAACCGGAGGTGGTCTCCAGCGAGACGGTGAAGCGATCGATGAAGCA
GGAGTCGTCCCAGGAAAAGAACCCCTCGCCCGCTGGCTCGCCGCAGAGGG
ATCCCCTGGACGTGAGCTTTAATGATCCGATTGCTGCTTTCAAGAGCAAG
ACCACTGGAGAGCTAATACGCGCCTATCTCGTCTACATGATATGTTCCAG
CGAGAAGCTGGTCGAGCACAACATGACGCTTATGAAATGGTCAAAGAACG
TATTGGGTCAACGGTTATTTACATTATTGATGAAGGCGACCTTCTATGGC
CACTTTGTCGCCGGCGAGGATCAGATCAAGATCATACCCACACTGGAAAG
GCTAAGATCCTTTGGCGTTAAGCCGATTCTCGATTATTCCGTTGAGGAGG
ATATCACCCAGGAGGAGGCCGAGAAACGTGAAGTTGAATCTTCCGTCTCC
AGTGCAGGCGACAAAAAGGAGGAGGGCAGCATGCCGCAGTACCATGTGGA
CAAGTCCTTTGCGGATCGGCGCTACAAGGTCAGCAGTGCTCGCACCTACT
TCTACTTGAACGAGGCCACCTGCGAGCGGAACATGGAGATCTTCATCAAG
TGTCTGGAGGCTGTTTCGGGCGCCACCTTTGGAACTGGCATCACCGCCAT
TAAACTCACCGCCTTGGGGC

BO05534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1417-PF 2010 slgA-RF 1..897 17..913 4485 100 Plus
CG1417-PG 2010 slgA-RG 1..897 17..913 4485 100 Plus
CG1417-PH 2010 slgA-RH 1..897 17..913 4485 100 Plus
CG1417-PA 2010 slgA-RA 1..897 17..913 4485 100 Plus
CG1417-PE 2046 slgA-RE 1..853 17..869 4265 100 Plus
CG1417-PD 2046 slgA-RD 1..471 17..487 2330 99.7 Plus
CG1417-PB 2010 slgA-RB 1..471 17..487 2330 99.7 Plus
CG1417-PB 2010 slgA-RB 583..897 599..913 1575 100 Plus
CG1417-PD 2046 slgA-RD 583..853 599..869 1355 100 Plus
CG1417-PE 2046 slgA-RE 887..933 867..913 235 100 Plus
CG1417-PD 2046 slgA-RD 887..933 867..913 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 3359 CG1417-RL 96..997 17..918 4495 99.9 Plus
slgA-RK 3404 CG1417-RK 141..1042 17..918 4495 99.9 Plus
slgA-RJ 3472 CG1417-RJ 209..1110 17..918 4495 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21376205..21376666 17..478 2310 100 Plus
X 23542271 X 21380882..21381064 688..870 915 100 Plus
X 23542271 X 21379587..21379710 478..601 620 100 Plus
X 23542271 X 21380649..21380737 599..687 445 100 Plus
X 23542271 X 21382179..21382228 869..918 235 98 Plus
Blast to na_te.dros performed on 2015-02-11 02:41:44 has no hits.

BO05534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:34 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-PH 1..903 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:18 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1417-PH 1..903 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:05 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 217..1122 11..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:47 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 206..1111 11..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:47 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21376202..21376666 11..478 99 -> Plus
X 21379588..21379709 479..600 100 -> Plus
X 21380651..21380737 601..687 100 -> Plus
X 21380882..21381063 688..869 100 -> Plus
X 21382180..21382229 870..920 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:05 Download gff for BO05534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21247229..21247693 11..478 99 -> Plus
arm_X 21250615..21250736 479..600 100 -> Plus
arm_X 21251678..21251764 601..687 100 -> Plus
arm_X 21251909..21252090 688..869 100 -> Plus
arm_X 21253207..21253256 870..920 96   Plus

BO05534.complete Sequence

2041 bp assembled on 2008-08-14

GenBank Submission: FJ630074

> BO05534.complete
GAAGTTATCAGTCGACATGGCTCTACTCCGTTCGCTGAGCGCCCAACGAA
CAGCCATCAGTTTGGTCTACGGCCGTAATAGCAGCAAGTCGAGCAATTCC
GTGGCCGTCGCCGCCTGCCGGAGTTTCCATCAGCGCGGCAGCGGGAGCAC
CAGCATCGCCGGAGAAGGAGCAGCATCGGAGTCCACGAGAGGAGTCAATG
GAGCGCGCTTCCTGCACAGCGGCGACCGGCCGCTGCAGGCCTCCACTCTG
GTCCAACCGGAGGTGGTCTCCAGCGAGACGGTGAAGCGATCGATGAAGCA
GGAGTCGTCCCAGGAAAAGAACCCCTCGCCCGCTGGCTCGCCGCAGAGGG
ATCCCCTGGACGTGAGCTTTAATGATCCGATTGCTGCTTTCAAGAGCAAG
ACCACTGGAGAGCTAATACGCGCCTATCTCGTCTACATGATATGTTCCAG
CGAGAAGCTGGTCGAGCACAACATGACGCTTATGAAATGGTCAAAGAACG
TATTGGGTCAACGGTTATTTACATTATTGATGAAGGCGACCTTCTATGGC
CACTTTGTCGCCGGCGAGGATCAGATCAAGATCATACCCACACTGGAAAG
GCTAAGATCCTTTGGCGTTAAGCCGATTCTCGATTATTCCGTTGAGGAGG
ATATCACCCAGGAGGAGGCCGAGAAACGTGAAGTTGAATCTTCCGTCTCC
AGTGCAGGCGACAAAAAGGAGGAGGGCAGCATGCCGCAGTACCATGTGGA
CAAGTCCTTTGCGGATCGGCGCTACAAGGTCAGCAGTGCTCGCACCTACT
TCTACTTGAACGAGGCCACCTGCGAGCGGAACATGGAGATCTTCATCAAG
TGTCTGGAGGCTGTTTCGGGCGCCACCTTTGGAACTGGCATCACCGCCAT
TAAACTCACCGCCCTGGGCCGTCCACAATTGCTGCTGCAACTGTCCGAGG
TAATCATGCGCACACGCAAGTACATGGAGGATATGGTGGGCGGTCAGGGC
AATGTGCTGACTCACCACAAGACCATCAAGGATCTCGAAAAGTATTACGC
CACGCTGGGCGACAATAAGGACGTCAAGGAGTTCCTGAACAATGTAACGT
CCGATAAGGAGGGAATTTTGCATTTGTTCCCCTGGTCGGGCATTGTTGAC
GAGGACTCGCAGCTGAGCGACACGTTCCGCGTTCCCGATCCCCAAACCGG
ACAGATGCGTCGACTGATCTCACAAATACCGCCCAAGGAGGAGGAGATGT
TCAGGAACATGATCCGTCGTCTCAACACGATTGTAAAGGCTGCTGCGGAC
TTGGATGTGCGTATCATGGTGGATGCGGAGCAGACTTACTTCCAGCCGGC
CATCTCCCGTATCACCCTGGAAATGATGCGCAAGTACAACAAGGACAAGG
CCATTGTCTTTAATACGTACCAGTGCTATCTGCGCGAGACGTTCCGCGAG
GTGAACACCGATCTGGAGCAGGCCAAGCGCCAGAACTTCTACTTCGGCGC
CAAGCTGGTGCGCGGTGCCTATATGGACCAGGAGCGGGACCGTGCCAAGT
CGCTGGGCTACCCGGATCCGGTAAATCCCACGTTCGAGGCCACCACGGAC
ATGTATCACAGGACGTTGTCGGAGTGCTTGCGACGCATTAAGCTGATGAA
GGACTGTGATGACGATGCCAGGAAGATTGGTATTATGGTGGCCTCGCACA
ACGAAGACACCGTACGATTTGCCATCCAGCAGATGAAGGAGATCGGCATC
TCACCGGAGGACAAGGTGATCTGCTTCGGCCAACTGCTGGGCATGTGCGA
CTACATTACCTTTCCACTGGGTCAAGCGGGATACTCGGCGTACAAGTACA
TACCATATGGCCCAGTCGAAGAGGTGCTGCCCTACTTGTCTCGTCGTGCC
CAGGAGAACAAGGGTGTGCTCAAGAAGATCAAGAAGGAAAAACGCCTGCT
GCTCTCCGAGATTCGGCGCCGTCTGATGCGTGGCCAGTTGTTCTACAAGC
CCAAGGGCAATTACGTGCCCATCGCAAGCTTTCTAGACCAT

BO05534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 2010 CG1417-PL 1..2007 17..2023 10035 100 Plus
slgA-RK 2010 CG1417-PK 1..2007 17..2023 10035 100 Plus
slgA-RJ 2010 CG1417-PJ 1..2007 17..2023 10035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-RL 3359 CG1417-RL 96..2102 17..2023 10035 100 Plus
slgA-RK 3404 CG1417-RK 141..2147 17..2023 10035 100 Plus
slgA-RJ 3472 CG1417-RJ 209..2215 17..2023 10035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21376205..21376666 17..478 2310 100 Plus
X 23542271 X 21383028..21383383 1287..1642 1780 100 Plus
X 23542271 X 21383699..21383902 1820..2023 1020 100 Plus
X 23542271 X 21380882..21381064 688..870 915 100 Plus
X 23542271 X 21383448..21383630 1641..1823 915 100 Plus
X 23542271 X 21382543..21382727 929..1113 910 99.5 Plus
X 23542271 X 21382793..21382969 1113..1289 885 100 Plus
X 23542271 X 21379587..21379710 478..601 620 100 Plus
X 23542271 X 21380649..21380737 599..687 445 100 Plus
X 23542271 X 21382179..21382244 869..934 330 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:12:05 has no hits.

BO05534.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:07 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RG 153..2176 11..2037 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:48 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 220..2226 17..2025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:39 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RG 156..2162 17..2025 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:49 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
slgA-RJ 209..2215 17..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:49 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
X 21382549..21382727 935..1113 100 -> Plus
X 21382180..21382244 870..934 100 -> Plus
X 21376205..21376666 17..478 100 -> Plus
X 21379588..21379709 479..600 100 -> Plus
X 21380651..21380737 601..687 100 -> Plus
X 21380882..21381063 688..869 100 -> Plus
X 21382794..21382968 1114..1288 100 -> Plus
X 21383030..21383383 1289..1642 100 -> Plus
X 21383450..21383627 1643..1820 100 -> Plus
X 21383700..21383902 1821..2025 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:48 Download gff for BO05534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21254477..21254654 1643..1820 100 -> Plus
arm_X 21247232..21247693 17..478 100 -> Plus
arm_X 21250615..21250736 479..600 100 -> Plus
arm_X 21251678..21251764 601..687 100 -> Plus
arm_X 21251909..21252090 688..869 100 -> Plus
arm_X 21253207..21253271 870..934 100 -> Plus
arm_X 21253576..21253754 935..1113 100 -> Plus
arm_X 21253821..21253995 1114..1288 100 -> Plus
arm_X 21254057..21254410 1289..1642 100 -> Plus
arm_X 21254727..21254929 1821..2025 99   Plus

BO05534.pep Sequence

Translation from 16 to 2041

> BO05534.pep
MALLRSLSAQRTAISLVYGRNSSKSSNSVAVAACRSFHQRGSGSTSIAGE
GAASESTRGVNGARFLHSGDRPLQASTLVQPEVVSSETVKRSMKQESSQE
KNPSPAGSPQRDPLDVSFNDPIAAFKSKTTGELIRAYLVYMICSSEKLVE
HNMTLMKWSKNVLGQRLFTLLMKATFYGHFVAGEDQIKIIPTLERLRSFG
VKPILDYSVEEDITQEEAEKREVESSVSSAGDKKEEGSMPQYHVDKSFAD
RRYKVSSARTYFYLNEATCERNMEIFIKCLEAVSGATFGTGITAIKLTAL
GRPQLLLQLSEVIMRTRKYMEDMVGGQGNVLTHHKTIKDLEKYYATLGDN
KDVKEFLNNVTSDKEGILHLFPWSGIVDEDSQLSDTFRVPDPQTGQMRRL
ISQIPPKEEEMFRNMIRRLNTIVKAAADLDVRIMVDAEQTYFQPAISRIT
LEMMRKYNKDKAIVFNTYQCYLRETFREVNTDLEQAKRQNFYFGAKLVRG
AYMDQERDRAKSLGYPDPVNPTFEATTDMYHRTLSECLRRIKLMKDCDDD
ARKIGIMVASHNEDTVRFAIQQMKEIGISPEDKVICFGQLLGMCDYITFP
LGQAGYSAYKYIPYGPVEEVLPYLSRRAQENKGVLKKIKKEKRLLLSEIR
RRLMRGQLFYKPKGNYVPIASFLDH

BO05534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
slgA-PL 669 CG1417-PL 1..669 1..669 3425 100 Plus
slgA-PK 669 CG1417-PK 1..669 1..669 3425 100 Plus
slgA-PJ 669 CG1417-PJ 1..669 1..669 3425 100 Plus
slgA-PA 669 CG1417-PA 1..669 1..669 3425 100 Plus
slgA-PH 669 CG1417-PH 1..669 1..669 3425 100 Plus