Clone Sequence Records
BO05536.3prime Sequence
854 bp (845 high quality bases) assembled on 2005-12-02
> BO05536.3prime
ATGGTCTAGAAAGCTTGCCACATACTGGTGGTCGCCAGCCATCCCATCTG
GACAATCCACGCTCAGCAGCGGCTCCTTTTCGATGGTCTGATGCGTTTGC
GCATCGTAGTCGTAGTAGTTCATCCAGTCCACTCGCTTGGGCTGCACCAA
TCCGAAGCAGCTGCACTCGAGGAAGTCCACGAGGTTCTGGATGGGACCAC
GTGTGAACGGGCTGTGGCCGCCCTTGGCCTGGAAGTGGCGATACCGTCCC
CGGTTCATGCGCTCATTCGTTGTCATGCCCAAGCAAATCACCTGATATGT
CTGGCAGATCGTCAACAGGATGACCCAGGACATGTGCAGCAGGGCGTTAC
CCATTACCCAGCCCACCCAGGCATCGCAGTTGCCAATGGCCCGCATGGCA
CCGAGAAAGTCATCGAATCGCACATTGCATTGATTCACGTAGTACTTGGA
GCCTCCGTACAGCATCCAGGCGCACATAATCAGCAACATCCAGAGGAATC
CCATAAAGTAACTGTGGTTCTTCAGCCCGATGCAGTTGCCCACCCAGGGG
CAGTGGTGATCAAACCTCGCTACACAGCGATCACACACGGAGCAGTGCTT
TGAGCGGATGGGCCGGCGCACCAAGCAGCCAGAGCAGAAGGAGGCGGGCT
CAAAGCCGATTCCACCCCGCTCCGACAACTCAATGATGGTCTTAAATCGC
TGCTCTCTGGTTGGTCGAATGATACCGGGATCTCCCTTCCACGACTTAAG
GAAGCACACCCACAATAGCAGCGAGGAGATCAGGAAGCAAACGGTGGCCG
TAAACGAAACGGCATCGTCGATGTACATTAGCCAGGTGACATAGAACCAG
GCCT
BO05536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6017-PA | 1914 | CG6017-RA | 1076..1911 | 854..19 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-RC | 3910 | CG6017-RC | 1465..2300 | 854..19 | 4180 | 100 | Minus |
| Hip14-RB | 3086 | CG6017-RB | 1465..2300 | 854..19 | 4180 | 100 | Minus |
| Hip14-RA | 3086 | CG6017-RA | 1465..2300 | 854..19 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15990462..15990854 | 411..19 | 1965 | 100 | Minus |
| 3L | 28110227 | 3L | 15990127..15990408 | 692..411 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 15989897..15990060 | 854..691 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:20:18 has no hits.
BO05536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:36 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-PA | 1076..1914 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:20 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-PA | 1076..1914 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:19 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 1465..2300 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:22 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 1465..2300 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:22 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15989897..15990060 | 691..854 | 100 | -> | Minus |
| 3L | 15990129..15990408 | 411..690 | 100 | -> | Minus |
| 3L | 15990463..15990854 | 19..410 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:19 Download gff for
BO05536.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15982997..15983160 | 691..854 | 100 | -> | Minus |
| arm_3L | 15983229..15983508 | 411..690 | 100 | -> | Minus |
| arm_3L | 15983563..15983954 | 19..410 | 100 | | Minus |
BO05536.5prime Sequence
851 bp (751 high quality bases) assembled on 2005-12-02
> BO05536.5prime
GAAGTTATCAGTCGACATGTACCAGAGTGCCTGCCAGGCGGCCACTACGG
GCTCCTGTGTCCCGGGAACCGGTCAGCAGCCAGACAACGAGCGACAGTCG
GCGCTGATCGCCCAACAACCCCCCACCGCGCCCGTGGAGCCAGATTACAG
TGGCTTCGATATCGTTAAGGCCACCCAGTATGGTGCCATTGCCCGAGTAC
GGGAGCTGGTTGAATCCGGCTGGGATGTCAATCAGCCGGACAGCGAAACG
GTCACCCTGCTTCATTGGGCGGCCATTAACAATCGTAGGGACATCATCCG
GTACTTCCTCGAGAAGGGCGCCACCGTGGATGCCGTGGGCGGCGAACTTA
ATGCCACGCCCCTGCACTGGGCCACTCGACAGGGACATCTCGGCGCCGTT
GTTCTGCTAATGGCCGCTGGTGCAGATCCGAGAATCAGGGATGCGGAGGG
TTGCTCCTGCATACACATCGCCGCCCAGTTCGCCCACACCGCTCTAGTGG
CCTATTTCATAGCCAAGGGCGTGGACCCGGATCTCCAGGATCGAGGCGGA
ATGACGGCGCTGATGTGGGCAGCATGGAAGGTTTGCGCACTGGATCCAGT
GCGCTTGCTGCTGACCCTTGGAGCGAACCCCGCCATGGTTGATTATACGC
ATGGAAACACGGCCCTGCATTGGGCTATCCTGGCCCGCAATGCCACGGCC
ATTTCCACACTCGTGCTCAAGTCAAAGGCCTCGTTGGATGTACCCAATCT
GCGGGGTGAGACACCGCTCTCCATGCTAGAATCCCAGACGGGAGCCATTT
GGATAGGAGCGAANGTAATGGACCGCGTGNAAGAGGCGGCACTTACTTCG
C
BO05536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6017-PA | 1914 | CG6017-RA | 1..835 | 17..851 | 4137 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-RC | 3910 | CG6017-RC | 390..1224 | 17..851 | 4153 | 99.8 | Plus |
| Hip14-RB | 3086 | CG6017-RB | 390..1224 | 17..851 | 4153 | 99.8 | Plus |
| Hip14-RA | 3086 | CG6017-RA | 390..1224 | 17..851 | 4153 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15988625..15989190 | 17..582 | 2830 | 100 | Plus |
| 3L | 28110227 | 3L | 15989383..15989656 | 578..851 | 1348 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:58:26 has no hits.
BO05536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:24:37 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:21 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:53:34 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 385..1224 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:49 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 385..1224 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:49 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15988620..15989188 | 9..580 | 99 | -> | Plus |
| 3L | 15989386..15989656 | 581..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:53:34 Download gff for
BO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15981720..15982288 | 9..580 | 99 | -> | Plus |
| arm_3L | 15982486..15982756 | 581..851 | 99 | | Plus |
BO05536.complete Sequence
1945 bp assembled on 2007-10-05
GenBank Submission: FJ630075
> BO05536.complete
GAAGTTATCAGTCGACATGTACCAGAGTGCCTGCCAGGCGGCCACTACGG
GCTCCTGTGTCCCGGGAACCGGTCAGCAGCCAGACAACGAGCGACAGTCG
GCGCTGATCGCCCAACAACCCCCCACCGCGCCCGTGGAGCCAGATTACAG
TGGCTTCGATATCGTTAAGGCCACCCAGTATGGTGCCATTGCCCGAGTAC
GGGAGCTGGTTGAATCCGGCTGGGATGTCAATCAGCCGGACAGCGAAACG
GTCACCCTGCTTCATTGGGCGGCCATTAACAATCGTAGGGACATCATCCG
GTACTTCCTCGAGAAGGGCGCCACCGTGGATGCCGTGGGCGGCGAACTTA
ATGCCACGCCCCTGCACTGGGCCACTCGACAGGGACATCTCGGCGCCGTT
GTTCTGCTAATGGCCGCTGGTGCAGATCCGAGAATCAGGGATGCGGAGGG
TTGCTCCTGCATACACATCGCCGCCCAGTTCGCCCACACCGCTCTAGTGG
CCTATTTCATAGCCAAGGGCGTGGACCCGGATCTCCAGGATCGAGGCGGA
ATGACGGCGCTGATGTGGGCAGCATGGAAGGTTTGCGCACTGGATCCAGT
GCGCTTGCTGCTGACCCTTGGAGCGAACCCCGCCATGGTTGATTATACGC
ATGGAAACACGGCCCTGCATTGGGCTATCCTGGCCCGCAATGCCACGGCC
ATTTCCACACTCGTGCTCAAGTCAAAGGCCTCGTTGGATGTACCCAATCT
GCGGGGTGAGACACCGCTCTCCATGCTAGAATCCCAGACGGGAGCCATTT
GGATAGGAGCGAAGGTAATGGACCGCGTGAAAGAGGCGGCACTTACTTCG
CAGCAACGGCGCTCGCTGCTCTCCAAGCTGCGGCATGACAAACGCCTGAG
GTGGTGGTCCATGGTGGCCTGCCCCTTCACCGCCTTCTATCTGGCTGGCA
TCGTGTTCACCGTGAACACGCTGTACATTATTAAGTTTTTCCTGTTGGGC
TGCTTGTATTCCATATTCCATACGATCGGCAAAGCACTATTCGATGAGCA
CCTGATGGCCCTGCTGCCGCTGAGTGTTTACCTGGCCACCAAGGCCTGGT
TCTATGTCACCTGGCTAATGTACATCGACGATGCCGTTTCGTTTACGGCC
ACCGTTTGCTTCCTGATCTCCTCGCTGCTATTGTGGGTGTGCTTCCTTAA
GTCGTGGAAGGGAGATCCCGGTATCATTCGACCAACCAGAGAGCAGCGAT
TTAAGACCATCATTGAGTTGTCGGAGCGGGGTGGAATCGGCTTTGAGCCC
GCCTCCTTCTGCTCTGGCTGCTTGGTGCGCCGGCCCATCCGCTCAAAGCA
CTGCTCCGTGTGTGATCGCTGTGTAGCGAGGTTTGATCACCACTGCCCCT
GGGTGGGCAACTGCATCGGGCTGAAGAACCACAGTTACTTTATGGGATTC
CTCTGGATGTTGCTGATTATGTGCGCCTGGATGCTGTACGGAGGCTCCAA
GTACTACGTGAATCAATGCAATGTGCGATTCGATGACTTTCTCGGTGCCA
TGCGGGCCATTGGCAACTGCGATGCCTGGGTGGGCTGGGTAATGGGTAAC
GCCCTGCTGCACATGTCCTGGGTCATCCTGTTGACGATCTGCCAGACATA
TCAGGTGATTTGCTTGGGCATGACAACGAATGAGCGCATGAACCGGGGAC
GGTATCGCCACTTCCAGGCCAAGGGCGGCCACAGCCCGTTCACACGTGGT
CCCATCCAGAACCTCGTGGACTTCCTCGAGTGCAGCTGCTTCGGATTGGT
GCAGCCCAAGCGAGTGGACTGGATGAACTACTACGACTACGATGCGCAAA
CGCATCAGACCATCGAAAAGGAGCCGCTGCTGAGCGTGGATTGTCCAGAT
GGGATGGCTGGCGACCACCAGTATGTGGCAAGCTTTCTAGACCAT
BO05536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-RC | 1914 | CG6017-PC | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| Hip14-RB | 1968 | CG6017-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| Hip14-RA | 1914 | CG6017-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-RC | 3910 | CG6017-RC | 390..2300 | 17..1927 | 9555 | 100 | Plus |
| Hip14-RB | 3086 | CG6017-RB | 390..2300 | 17..1927 | 9555 | 100 | Plus |
| Hip14-RA | 3086 | CG6017-RA | 390..2300 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15989383..15990060 | 578..1255 | 3390 | 100 | Plus |
| 3L | 28110227 | 3L | 15988625..15989190 | 17..582 | 2830 | 100 | Plus |
| 3L | 28110227 | 3L | 15990462..15990854 | 1535..1927 | 1965 | 100 | Plus |
| 3L | 28110227 | 3L | 15990127..15990408 | 1254..1535 | 1410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:04 has no hits.
BO05536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:47 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-RA | 1..1914 | 17..1928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:38 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 381..2296 | 9..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:01 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 390..2300 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:48 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-RA | 381..2296 | 9..1927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:19 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 390..2300 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:19 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15990463..15990854 | 1536..1929 | 99 | | Plus |
| 3L | 15988625..15989188 | 17..580 | 100 | -> | Plus |
| 3L | 15989386..15990060 | 581..1255 | 100 | -> | Plus |
| 3L | 15990129..15990408 | 1256..1535 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:01 Download gff for
BO05536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15981725..15982288 | 17..580 | 100 | -> | Plus |
| arm_3L | 15982486..15983160 | 581..1255 | 100 | -> | Plus |
| arm_3L | 15983229..15983508 | 1256..1535 | 100 | -> | Plus |
| arm_3L | 15983563..15983954 | 1536..1929 | 99 | | Plus |
BO05536.pep Sequence
Translation from 16 to 1945
> BO05536.pep
MYQSACQAATTGSCVPGTGQQPDNERQSALIAQQPPTAPVEPDYSGFDIV
KATQYGAIARVRELVESGWDVNQPDSETVTLLHWAAINNRRDIIRYFLEK
GATVDAVGGELNATPLHWATRQGHLGAVVLLMAAGADPRIRDAEGCSCIH
IAAQFAHTALVAYFIAKGVDPDLQDRGGMTALMWAAWKVCALDPVRLLLT
LGANPAMVDYTHGNTALHWAILARNATAISTLVLKSKASLDVPNLRGETP
LSMLESQTGAIWIGAKVMDRVKEAALTSQQRRSLLSKLRHDKRLRWWSMV
ACPFTAFYLAGIVFTVNTLYIIKFFLLGCLYSIFHTIGKALFDEHLMALL
PLSVYLATKAWFYVTWLMYIDDAVSFTATVCFLISSLLLWVCFLKSWKGD
PGIIRPTREQRFKTIIELSERGGIGFEPASFCSGCLVRRPIRSKHCSVCD
RCVARFDHHCPWVGNCIGLKNHSYFMGFLWMLLIMCAWMLYGGSKYYVNQ
CNVRFDDFLGAMRAIGNCDAWVGWVMGNALLHMSWVILLTICQTYQVICL
GMTTNERMNRGRYRHFQAKGGHSPFTRGPIQNLVDFLECSCFGLVQPKRV
DWMNYYDYDAQTHQTIEKEPLLSVDCPDGMAGDHQYVASFLDH
BO05536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-PC | 637 | CG6017-PC | 1..637 | 1..637 | 3443 | 100 | Plus |
| Hip14-PB | 655 | CG6017-PB | 1..637 | 1..637 | 3443 | 100 | Plus |
| Hip14-PA | 637 | CG6017-PA | 1..637 | 1..637 | 3443 | 100 | Plus |
| Patsas-PA | 585 | CG6618-PA | 91..569 | 47..589 | 519 | 27.6 | Plus |
| CG34449-PG | 906 | CG34449-PG | 18..266 | 346..628 | 215 | 26.3 | Plus |
