Clone BO05552 Report

Search the DGRC for BO05552

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG4080-RA
Protein status:BO05552.pep: validated full length
Sequenced Size:1885

Clone Sequence Records

BO05552.3prime Sequence

886 bp (855 high quality bases) assembled on 2005-12-02

> BO05552.3prime
ATGGTCTAGAAAGCTTGCCTTCTGGAGTAGACTTTCACAGCTGCTGCTGA
GATTTGGCAACGACTTGAAACTGAGCCGCGAGCGATCCACCTGGGCGTCC
GAGGGACCGTAGCCCCTGCTGCTCTTGCTGCTGCTGACCCCATTCACTCC
GCGGTCAAAGGATGAGGAGATCACAAGCTGATGGGAATTCCGCTGCTTCT
GCTGGCTGCTGGCATAGGCGGCAGGTGGTGATAGTGGCGATGTGGGCAGG
TCGATATCCAGCACGGTATCCGCTTCGCCGGCCTTCAGCTTGGGATCCGA
GTAGCGACGTAGTTCCTCCTTCGTCGGCTGACCACCTAAACAATCAGTGG
TGCAGCAACCAATGGGCAAATCAACGCCCATTATCCCAGAGTGACGGTAG
TCGATCTTTGGCGGCGTGCTGTAATCGTAAGGATGTACGGCAGTATCGGG
ACCCACGCTGGTCTGATCGCTCAGCACATCGCGGTTCTCGAGAAAGATGG
ACGAGTTGGAGTAGCGCTTTGTCTGGTGCGGCTTGTAAACAAATCCGCCT
AGCCCGTTGGCTACTGCATGCGATACTCCGGAACTGATCGAGGGTGCCTT
GTGCTCGCCACTACCACTAAAGCTGCTTAATTGCAGAGCGTGCTCGCGGC
CTGTATCCGTGGAAATGCCGCTGGCACTGAGATCCTGCCGTGATCCGGCG
CACAGATCCGTAGCAGAGCCGCGACTAGAGCCCTCCGAATGCTCCAGCAC
GTTGTGTATGGAGTCGTGGAAGGGCGTCATGCTGCCCGATCCCTGAGGAC
AGGGTCGGAATGATGAGATCTGCGAGACCACATCATCGAGGGCCCAGTCG
CGATCGTTATTGTGCTGTGACTGCGAGCACTCGATA

BO05552.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PA 1854 CG4080-RA 984..1851 886..19 4315 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 1625..2492 886..19 4325 99.9 Minus
CG4080-RA 2771 CG4080-RA 1625..2492 886..19 4325 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9387788..9388384 19..615 2985 100 Plus
3L 28110227 3L 9388440..9388713 613..886 1355 99.6 Plus
Blast to na_te.dros performed 2015-02-11 15:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1513..1589 562..484 119 64.6 Minus

BO05552.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:04 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 985..1854 16..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:57 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 985..1854 16..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:25 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1626..2496 15..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:57 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1626..2496 15..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:57 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9387783..9388383 15..614 99 <- Plus
3L 9388442..9388712 615..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:25 Download gff for BO05552.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9380883..9381483 15..614 99 <- Plus
arm_3L 9381542..9381812 615..885 99   Plus

BO05552.5prime Sequence

835 bp (762 high quality bases) assembled on 2005-12-02

> BO05552.5prime
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTA

BO05552.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PA 1854 CG4080-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 642..1460 17..835 4095 100 Plus
CG4080-RA 2771 CG4080-RA 642..1460 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9388878..9389122 835..591 1225 100 Minus
3L 28110227 3L 9390567..9390801 328..94 1175 100 Minus
3L 28110227 3L 9390281..9390427 473..327 735 100 Minus
3L 28110227 3L 9390002..9390124 594..472 615 100 Minus
3L 28110227 3L 9398507..9398586 96..17 400 100 Minus
Blast to na_te.dros performed on 2015-02-09 18:51:36 has no hits.

BO05552.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:06 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:59 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:02:11 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..1459 17..834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:15:17 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..1459 17..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:15:17 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9388879..9389118 595..834 100 <- Minus
3L 9390002..9390122 474..594 100 <- Minus
3L 9390281..9390425 329..473 100 <- Minus
3L 9390567..9390798 97..328 100 <- Minus
3L 9398507..9398586 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:02:11 Download gff for BO05552.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9381979..9382218 595..834 100 <- Minus
arm_3L 9383102..9383222 474..594 100 <- Minus
arm_3L 9383381..9383525 329..473 100 <- Minus
arm_3L 9383667..9383898 97..328 100 <- Minus
arm_3L 9391607..9391686 17..96 100   Minus

BO05552.complete Sequence

1885 bp (1885 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630077

> BO05552.complete
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTCAAATGGCCGCTGAACTAGAGGTGCCGCACAGCAGCAG
CAGTGCCTGCACGCAGACGGAGGACGGACATGGCCACCAGCGGCACCAGC
AGATGCAGCAGAGCGGCCAGCAATTGGGCCAAGTGGCGGTGGCCGCCAAT
ATCGAGTGCTCGCAGTCACAGCACAATTACGATCGCGACTGGGCCCTCGA
TGATGTGGTCTCGCAGATCTCATCATTCCGACCCTGTCCTCAGGGATCGG
GCAGCATGACGCCCTTCCACGACTCCATACACAACGTGCTGGAGCATTCG
GAGGGCTCTAGTCGCGGCTCTGCTACGGATCTGTGCGCCGGATCACGGCA
GGATCTCAGTGCCAGCGGCATTTCCACGGATACAGGCCGCGAGCACGCTC
TGCAATTAAGCAGCTTTAGTGGTAGTGGCGAGCACAAGGCACCCTCGATC
AGTTCCGGAGTATCGCATGCAGTAGCCAACGGGCTAGGCGGATTTGTTTA
CAAGCCGCACCAGACAAAGCGCTACTCCAACTCGTCCATCTTTCTCGAGA
ACCGCGATGTGCTGAGCGATCAGACCAGCGTGGGTCCCGATACTGCCGTA
CATCCTTACGATTACAGCACGCCGCCAAAGATCGACTACCGTCACTCTGG
GATAATGGGCGTTGATTTGCCCATTGGTTGCTGCACCACTGATTGTTTAG
GTGGTCAGCCGACGAAGGAGGAACTACGTCGCTACTCGGATCCCAAGCTG
AAGGCCGGCGAAGCGGATACCGTGCTGGATATCGACCTGCCCACATCGCC
ACTATCACCACCTGCCGCCTATGCCAGCAGCCAGCAGAAGCAGCGGAATT
CCCATCAGCTTGTGATCTCCTCATCCTTTGACCGCGGAGTGAATGGGGTC
AGCAGCAGCAAGAGCAGCAGGGGCTACGGTCCCTCGGACGCCCAGGTGGA
TCGCTCGCGGCTCAGTTTCAAGTCGTTGCCAAATCTCAGCAGCAGCTGTG
AAAGTCTACTCCAGAAGGCAAGCTTTCTAGACCAT

BO05552.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 1854 CG4080-PB 1..1851 17..1867 9255 100 Plus
CG4080-RA 1854 CG4080-PA 1..1851 17..1867 9255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-RB 3453 CG4080-RB 642..2492 17..1867 9255 100 Plus
CG4080-RA 2771 CG4080-RA 642..2492 17..1867 9255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9388440..9389122 1273..591 3415 100 Minus
3L 28110227 3L 9387788..9388384 1867..1271 2985 100 Minus
3L 28110227 3L 9390567..9390801 328..94 1175 100 Minus
3L 28110227 3L 9390281..9390427 473..327 735 100 Minus
3L 28110227 3L 9390002..9390124 594..472 615 100 Minus
3L 28110227 3L 9398507..9398586 96..17 400 100 Minus
Blast to na_te.dros performed 2014-11-28 08:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 652..752 981..867 130 62.6 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 1513..1589 1324..1402 119 64.6 Plus

BO05552.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:35 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 1..1854 17..1870 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:02 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 665..2515 17..1869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:57 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..2492 17..1869 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:35 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 665..2519 17..1871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:02 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
CG4080-RA 642..2492 17..1869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:02 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9387785..9388383 1272..1869 99 <- Minus
3L 9388442..9389118 595..1271 100 <- Minus
3L 9390002..9390122 474..594 100 <- Minus
3L 9390281..9390425 329..473 100 <- Minus
3L 9390567..9390798 97..328 100 <- Minus
3L 9398507..9398586 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:57 Download gff for BO05552.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9380885..9381483 1272..1869 99 <- Minus
arm_3L 9381542..9382218 595..1271 100 <- Minus
arm_3L 9383102..9383222 474..594 100 <- Minus
arm_3L 9383381..9383525 329..473 100 <- Minus
arm_3L 9383667..9383898 97..328 100 <- Minus
arm_3L 9391607..9391686 17..96 100   Minus

BO05552.pep Sequence

Translation from 16 to 1885

> BO05552.pep
MPCDNAKTSSDIEHVDWNSGQHYANVRFGSGSSQASQNSGDICRICHCES
DPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIK
PFNEWRSLDISGIERRRLCYSVLFHCAAALCVIWSLCVLIERAADDVQRG
LIDWPFWTKLAVVTVGLTGGIVFMYIQCKAYLHLCHRWKARNRILLIQNA
PEKIHPVAPPSPVAAHHQHFSEPLAHAGSTSGAVEINASGAAGGYCAHEA
NCASMDNGGGGAEMGLHQQMQRLLNASPHHMLQMAAELEVPHSSSSACTQ
TEDGHGHQRHQQMQQSGQQLGQVAVAANIECSQSQHNYDRDWALDDVVSQ
ISSFRPCPQGSGSMTPFHDSIHNVLEHSEGSSRGSATDLCAGSRQDLSAS
GISTDTGREHALQLSSFSGSGEHKAPSISSGVSHAVANGLGGFVYKPHQT
KRYSNSSIFLENRDVLSDQTSVGPDTAVHPYDYSTPPKIDYRHSGIMGVD
LPIGCCTTDCLGGQPTKEELRRYSDPKLKAGEADTVLDIDLPTSPLSPPA
AYASSQQKQRNSHQLVISSSFDRGVNGVSSSKSSRGYGPSDAQVDRSRLS
FKSLPNLSSSCESLLQKASFLDH

BO05552.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4080-PB 617 CG4080-PB 1..617 1..617 3307 100 Plus
CG4080-PA 617 CG4080-PA 1..617 1..617 3307 100 Plus
CG1317-PD 988 CG1317-PD 5..60 38..93 194 51.8 Plus
CG1317-PC 988 CG1317-PC 5..60 38..93 194 51.8 Plus
CG13442-PA 425 CG13442-PA 148..379 25..239 192 26.9 Plus