Clone Sequence Records
BO05552.3prime Sequence
886 bp (855 high quality bases) assembled on 2005-12-02
> BO05552.3prime
ATGGTCTAGAAAGCTTGCCTTCTGGAGTAGACTTTCACAGCTGCTGCTGA
GATTTGGCAACGACTTGAAACTGAGCCGCGAGCGATCCACCTGGGCGTCC
GAGGGACCGTAGCCCCTGCTGCTCTTGCTGCTGCTGACCCCATTCACTCC
GCGGTCAAAGGATGAGGAGATCACAAGCTGATGGGAATTCCGCTGCTTCT
GCTGGCTGCTGGCATAGGCGGCAGGTGGTGATAGTGGCGATGTGGGCAGG
TCGATATCCAGCACGGTATCCGCTTCGCCGGCCTTCAGCTTGGGATCCGA
GTAGCGACGTAGTTCCTCCTTCGTCGGCTGACCACCTAAACAATCAGTGG
TGCAGCAACCAATGGGCAAATCAACGCCCATTATCCCAGAGTGACGGTAG
TCGATCTTTGGCGGCGTGCTGTAATCGTAAGGATGTACGGCAGTATCGGG
ACCCACGCTGGTCTGATCGCTCAGCACATCGCGGTTCTCGAGAAAGATGG
ACGAGTTGGAGTAGCGCTTTGTCTGGTGCGGCTTGTAAACAAATCCGCCT
AGCCCGTTGGCTACTGCATGCGATACTCCGGAACTGATCGAGGGTGCCTT
GTGCTCGCCACTACCACTAAAGCTGCTTAATTGCAGAGCGTGCTCGCGGC
CTGTATCCGTGGAAATGCCGCTGGCACTGAGATCCTGCCGTGATCCGGCG
CACAGATCCGTAGCAGAGCCGCGACTAGAGCCCTCCGAATGCTCCAGCAC
GTTGTGTATGGAGTCGTGGAAGGGCGTCATGCTGCCCGATCCCTGAGGAC
AGGGTCGGAATGATGAGATCTGCGAGACCACATCATCGAGGGCCCAGTCG
CGATCGTTATTGTGCTGTGACTGCGAGCACTCGATA
BO05552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PA | 1854 | CG4080-RA | 984..1851 | 886..19 | 4315 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 1625..2492 | 886..19 | 4325 | 99.9 | Minus |
CG4080-RA | 2771 | CG4080-RA | 1625..2492 | 886..19 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9387788..9388384 | 19..615 | 2985 | 100 | Plus |
3L | 28110227 | 3L | 9388440..9388713 | 613..886 | 1355 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-11 15:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1513..1589 | 562..484 | 119 | 64.6 | Minus |
BO05552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:04 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 985..1854 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:57 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 985..1854 | 16..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:25 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1626..2496 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:34:57 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1626..2496 | 15..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:34:57 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9387783..9388383 | 15..614 | 99 | <- | Plus |
3L | 9388442..9388712 | 615..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:25 Download gff for
BO05552.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9380883..9381483 | 15..614 | 99 | <- | Plus |
arm_3L | 9381542..9381812 | 615..885 | 99 | | Plus |
BO05552.5prime Sequence
835 bp (762 high quality bases) assembled on 2005-12-02
> BO05552.5prime
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTA
BO05552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PA | 1854 | CG4080-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:51:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 642..1460 | 17..835 | 4095 | 100 | Plus |
CG4080-RA | 2771 | CG4080-RA | 642..1460 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9388878..9389122 | 835..591 | 1225 | 100 | Minus |
3L | 28110227 | 3L | 9390567..9390801 | 328..94 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 9390281..9390427 | 473..327 | 735 | 100 | Minus |
3L | 28110227 | 3L | 9390002..9390124 | 594..472 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9398507..9398586 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:51:36 has no hits.
BO05552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:06 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:47:59 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:02:11 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..1459 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:15:17 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..1459 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:15:17 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9388879..9389118 | 595..834 | 100 | <- | Minus |
3L | 9390002..9390122 | 474..594 | 100 | <- | Minus |
3L | 9390281..9390425 | 329..473 | 100 | <- | Minus |
3L | 9390567..9390798 | 97..328 | 100 | <- | Minus |
3L | 9398507..9398586 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:02:11 Download gff for
BO05552.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9381979..9382218 | 595..834 | 100 | <- | Minus |
arm_3L | 9383102..9383222 | 474..594 | 100 | <- | Minus |
arm_3L | 9383381..9383525 | 329..473 | 100 | <- | Minus |
arm_3L | 9383667..9383898 | 97..328 | 100 | <- | Minus |
arm_3L | 9391607..9391686 | 17..96 | 100 | | Minus |
BO05552.complete Sequence
1885 bp (1885 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630077
> BO05552.complete
GAAGTTATCAGTCGACATGCCTTGCGACAACGCCAAAACCTCTTCGGATA
TCGAGCATGTGGATTGGAATTCCGGCCAGCACTATGCGAATGTCAGATTC
GGTTCGGGCAGCAGCCAGGCATCGCAGAACAGCGGCGACATCTGCCGCAT
CTGCCACTGCGAGAGTGATCCGCAGAATCCGCTGCTCACGCCGTGCTATT
GCTCCGGCAGTCTGAAGTACGTGCACCAAGCGTGCTTGCAGCAATGGCTC
ACCGCCTCCGAGACGAACTCCTGCGAGTTGTGCAAGTTCCCCTTCATCAT
GCACACCAAGATCAAACCCTTCAACGAGTGGCGCAGCCTTGACATCTCCG
GCATTGAAAGGCGGCGGCTGTGCTACTCCGTGCTGTTCCATTGCGCCGCA
GCCCTGTGCGTCATCTGGTCCCTGTGTGTGCTCATCGAGCGGGCCGCCGA
CGATGTCCAGCGTGGCCTAATAGACTGGCCCTTCTGGACAAAGCTGGCCG
TTGTCACCGTGGGCCTTACCGGCGGAATAGTTTTTATGTATATCCAGTGC
AAGGCATATCTTCACCTCTGTCACCGTTGGAAAGCACGCAACAGAATTCT
ACTGATTCAGAATGCTCCAGAAAAGATACATCCAGTGGCACCTCCATCCC
CAGTGGCCGCCCATCATCAGCACTTCAGTGAGCCACTGGCTCATGCCGGA
TCGACGAGCGGAGCAGTGGAGATCAATGCCAGCGGTGCAGCCGGAGGATA
CTGTGCCCACGAGGCAAACTGTGCATCAATGGATAATGGTGGCGGCGGTG
CCGAAATGGGTCTACATCAGCAAATGCAGCGCCTACTAAATGCCTCGCCA
CATCATATGCTTCAAATGGCCGCTGAACTAGAGGTGCCGCACAGCAGCAG
CAGTGCCTGCACGCAGACGGAGGACGGACATGGCCACCAGCGGCACCAGC
AGATGCAGCAGAGCGGCCAGCAATTGGGCCAAGTGGCGGTGGCCGCCAAT
ATCGAGTGCTCGCAGTCACAGCACAATTACGATCGCGACTGGGCCCTCGA
TGATGTGGTCTCGCAGATCTCATCATTCCGACCCTGTCCTCAGGGATCGG
GCAGCATGACGCCCTTCCACGACTCCATACACAACGTGCTGGAGCATTCG
GAGGGCTCTAGTCGCGGCTCTGCTACGGATCTGTGCGCCGGATCACGGCA
GGATCTCAGTGCCAGCGGCATTTCCACGGATACAGGCCGCGAGCACGCTC
TGCAATTAAGCAGCTTTAGTGGTAGTGGCGAGCACAAGGCACCCTCGATC
AGTTCCGGAGTATCGCATGCAGTAGCCAACGGGCTAGGCGGATTTGTTTA
CAAGCCGCACCAGACAAAGCGCTACTCCAACTCGTCCATCTTTCTCGAGA
ACCGCGATGTGCTGAGCGATCAGACCAGCGTGGGTCCCGATACTGCCGTA
CATCCTTACGATTACAGCACGCCGCCAAAGATCGACTACCGTCACTCTGG
GATAATGGGCGTTGATTTGCCCATTGGTTGCTGCACCACTGATTGTTTAG
GTGGTCAGCCGACGAAGGAGGAACTACGTCGCTACTCGGATCCCAAGCTG
AAGGCCGGCGAAGCGGATACCGTGCTGGATATCGACCTGCCCACATCGCC
ACTATCACCACCTGCCGCCTATGCCAGCAGCCAGCAGAAGCAGCGGAATT
CCCATCAGCTTGTGATCTCCTCATCCTTTGACCGCGGAGTGAATGGGGTC
AGCAGCAGCAAGAGCAGCAGGGGCTACGGTCCCTCGGACGCCCAGGTGGA
TCGCTCGCGGCTCAGTTTCAAGTCGTTGCCAAATCTCAGCAGCAGCTGTG
AAAGTCTACTCCAGAAGGCAAGCTTTCTAGACCAT
BO05552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 1854 | CG4080-PB | 1..1851 | 17..1867 | 9255 | 100 | Plus |
CG4080-RA | 1854 | CG4080-PA | 1..1851 | 17..1867 | 9255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-RB | 3453 | CG4080-RB | 642..2492 | 17..1867 | 9255 | 100 | Plus |
CG4080-RA | 2771 | CG4080-RA | 642..2492 | 17..1867 | 9255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9388440..9389122 | 1273..591 | 3415 | 100 | Minus |
3L | 28110227 | 3L | 9387788..9388384 | 1867..1271 | 2985 | 100 | Minus |
3L | 28110227 | 3L | 9390567..9390801 | 328..94 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 9390281..9390427 | 473..327 | 735 | 100 | Minus |
3L | 28110227 | 3L | 9390002..9390124 | 594..472 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9398507..9398586 | 96..17 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 652..752 | 981..867 | 130 | 62.6 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1513..1589 | 1324..1402 | 119 | 64.6 | Plus |
BO05552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:35 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 1..1854 | 17..1870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:55:02 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 665..2515 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:57 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..2492 | 17..1869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:35 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 665..2519 | 17..1871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:02 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4080-RA | 642..2492 | 17..1869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:02 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9387785..9388383 | 1272..1869 | 99 | <- | Minus |
3L | 9388442..9389118 | 595..1271 | 100 | <- | Minus |
3L | 9390002..9390122 | 474..594 | 100 | <- | Minus |
3L | 9390281..9390425 | 329..473 | 100 | <- | Minus |
3L | 9390567..9390798 | 97..328 | 100 | <- | Minus |
3L | 9398507..9398586 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:57 Download gff for
BO05552.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9380885..9381483 | 1272..1869 | 99 | <- | Minus |
arm_3L | 9381542..9382218 | 595..1271 | 100 | <- | Minus |
arm_3L | 9383102..9383222 | 474..594 | 100 | <- | Minus |
arm_3L | 9383381..9383525 | 329..473 | 100 | <- | Minus |
arm_3L | 9383667..9383898 | 97..328 | 100 | <- | Minus |
arm_3L | 9391607..9391686 | 17..96 | 100 | | Minus |
BO05552.pep Sequence
Translation from 16 to 1885
> BO05552.pep
MPCDNAKTSSDIEHVDWNSGQHYANVRFGSGSSQASQNSGDICRICHCES
DPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMHTKIK
PFNEWRSLDISGIERRRLCYSVLFHCAAALCVIWSLCVLIERAADDVQRG
LIDWPFWTKLAVVTVGLTGGIVFMYIQCKAYLHLCHRWKARNRILLIQNA
PEKIHPVAPPSPVAAHHQHFSEPLAHAGSTSGAVEINASGAAGGYCAHEA
NCASMDNGGGGAEMGLHQQMQRLLNASPHHMLQMAAELEVPHSSSSACTQ
TEDGHGHQRHQQMQQSGQQLGQVAVAANIECSQSQHNYDRDWALDDVVSQ
ISSFRPCPQGSGSMTPFHDSIHNVLEHSEGSSRGSATDLCAGSRQDLSAS
GISTDTGREHALQLSSFSGSGEHKAPSISSGVSHAVANGLGGFVYKPHQT
KRYSNSSIFLENRDVLSDQTSVGPDTAVHPYDYSTPPKIDYRHSGIMGVD
LPIGCCTTDCLGGQPTKEELRRYSDPKLKAGEADTVLDIDLPTSPLSPPA
AYASSQQKQRNSHQLVISSSFDRGVNGVSSSKSSRGYGPSDAQVDRSRLS
FKSLPNLSSSCESLLQKASFLDH
BO05552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4080-PB | 617 | CG4080-PB | 1..617 | 1..617 | 3307 | 100 | Plus |
CG4080-PA | 617 | CG4080-PA | 1..617 | 1..617 | 3307 | 100 | Plus |
CG1317-PD | 988 | CG1317-PD | 5..60 | 38..93 | 194 | 51.8 | Plus |
CG1317-PC | 988 | CG1317-PC | 5..60 | 38..93 | 194 | 51.8 | Plus |
CG13442-PA | 425 | CG13442-PA | 148..379 | 25..239 | 192 | 26.9 | Plus |