Clone BO05556 Report

Search the DGRC for BO05556

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:55
Well:56
Vector:pDNR-Dual
Associated Gene/Transcript5-HT7-RA
Protein status:BO05556.pep: full length peptide match
Sequenced Size:1726

Clone Sequence Records

BO05556.3prime Sequence

884 bp (822 high quality bases) assembled on 2005-12-02

> BO05556.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGCTCTCCCTCGCCCCGTGCCTCTCAT
CGCCCAGCATCACCCGCTGCGAGGGAGGCTCGCCATACTGATCCTGGTAG
TAGTTCTCCCGCATCATGGTGTTCAGGCTGGAGCAGCGGAAGTAGAGGAT
CTCCTGGAAGGGTTTGCGGAAATCCCTGTTCAGAGTGGCGTAGATAATAG
GGTTCAGCAGGGAGTTGGCATAGCCCAGCCAGAGGAATAGAGACGAGAGC
GATGCCGGTACGTGCATTGTCTCGAAAGGACGAATTAGGGCCAGGATAAA
GAATGGCAGCCAGCAGACGGTAAAGGCCGACATGATGATGCCCAGAGTGG
TGGAGGCCTTCTTCTCTTTGGCCAGTTGAAACCGCAGCTTCTTGTGGTGC
GGAGAGCCCAGGAGTCCGGTCGAACCACTAACGCCACCCCCACTGCCGTG
CCCAGCCAGTGCGCCTCCTCCGCTGCTCAGACCCCCACAGGTGGAGTAGG
TGAGCGAAGTGTTGCCCACGCTGCTGTGCCTCTGGCCATTTCCCGAGCTG
GCCAGCTCCGTGTGGCCCAAGGGCGGAGCCTGCGGGGCCGATGGCGATCC
TGTGCCATTGAGCGCCTGTTGCAAATGCGTCTGGGCGCGTTTCTCTTCCA
GGACAATCCGCCTCGCCGCCCTGAAGATCTGGTAGTACACAAACAGCATC
ACCGAGAGTGGTATGTAAAATGAGCCCAGGGTGGCGTAGATCTGATATGC
GAAGTTCTGGCACACCGTGCAGATAGGCTGGCCCTCCTCGTCCTCGTGCT
CGTTGCCCAGGATCAGCAGAGGAGGCAATGAGATGCAGGCGGCGGCCAGC
CAGACGATGCCCACGCACAGCATCATTCGCCGAG

BO05556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 827..1692 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1970..2835 884..19 4330 100 Minus
5-HT7-RA 3506 CG12073-RA 1896..2761 884..19 4330 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30969887..30970752 19..884 4330 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:53:33 has no hits.

BO05556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:13 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-PA 827..1695 18..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:08 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 827..1695 18..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:27 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1896..2766 13..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:39 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1896..2766 13..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:39 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30969882..30970752 13..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:27 Download gff for BO05556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26795604..26796474 13..884 99   Plus

BO05556.5prime Sequence

919 bp (810 high quality bases) assembled on 2005-11-29

> BO05556.5prime
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCCGCCGGCTGCATCTCATT
GCCTCCTCTGCTGATCCTG

BO05556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12073-PA 1695 5-HT7-RA 1..903 17..919 4490 99.8 Plus
CG3856-PB 1914 Oamb-RB 310..344 752..786 150 97.1 Plus
CG3856-PA 1938 Oamb-RA 310..344 752..786 150 97.1 Plus
CG3856-PC 1938 Oamb-RC 310..344 752..786 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1144..2046 17..919 4500 99.9 Plus
5-HT7-RA 3506 CG12073-RA 1070..1972 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30970676..30971578 919..17 4500 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 02:42:31 has no hits.

BO05556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:14 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:09 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12073-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:14 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1972 17..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:08 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..1972 17..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:08 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30970676..30971578 17..919 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:14 Download gff for BO05556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26796398..26797300 17..919 99   Minus

BO05556.complete Sequence

1726 bp (1726 high quality bases) assembled on 2005-09-12

GenBank Submission: FJ630078

> BO05556.complete
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCCGCCGCCTGCATCTCATT
GCCTCCTCTGCTGATCCTGGGCAACGAGCACGAGGACGAGGAGGGCCAGC
CTATCTGCACGGTGTGCCAGAACTTCGCATATCAGATCTACGCCACCCTG
GGCTCATTTTACATACCACTCTCGGTGATGCTGTTTGTGTACTACCAGAT
CTTCAGGGCGGCGAGGCGGATTGTCCTGGAAGAGAAACGCGCCCAGACGC
ATTTGCAACAGGCGCTCAATGGCACAGGATCGCCATCGGCCCCGCAGGCT
CCGCCCTTGGGCCACACGGAGCTGGCCAGCTCGGGAAATGGCCAGAGGCA
CAGCAGCGTGGGCAACACTTCGCTCACCTACTCCACCTGTGGGGGTCTGA
GCAGCGGAGGAGGCGCACTGGCTGGGCACGGCAGTGGGGGTGGCGTTAGT
GGTTCGACCGGACTCCTGGGCTCTCCGCACCACAAGAAGCTGCGGTTTCA
ACTGGCCAAAGAGAAGAAGGCCTCCACCACTCTGGGCATCATCATGTCGG
CCTTTACCGTCTGCTGGCTGCCATTCTTTATCCTGGCCCTAATTCGTCCT
TTCGAGACAATGCACGTACCGGCATCGCTCTCGTCTCTATTCCTCTGGCT
GGGCTATGCCAACTCCCTGCTGAACCCTATTATCTACGCCACTCTGAACA
GGGATTTCCGCAAACCCTTCCAGGAGATCCTCTACTTCCGCTGCTCCAGC
CTGAACACCATGATGCGGGAGAACTACTACCAGGATCAGTATGGCGAGCC
TCCCTCGCAGCGGGTGATGCTGGGCGATGAGAGGCACGGGGCGAGGGAGA
GCTTTCTCGCAAGCTTTCTAGACCAT

BO05556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 1695 CG12073-PB 1..1692 17..1708 8460 100 Plus
5-HT7-RA 1695 CG12073-PA 1..1692 17..1708 8460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-RB 4486 CG12073-RB 1144..2835 17..1708 8460 100 Plus
5-HT7-RA 3506 CG12073-RA 1070..2761 17..1708 8460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30969887..30971578 1708..17 8460 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:24:37 has no hits.

BO05556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:10 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1..1695 17..1709 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:22 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1042..2738 17..1714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:41 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..2761 17..1710 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:10 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1042..2738 17..1714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:01 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
5-HT7-RA 1070..2761 17..1710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:01 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30969885..30971578 17..1710 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:41 Download gff for BO05556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26795607..26797300 17..1710 99   Minus

BO05556.pep Sequence

Translation from 16 to 1726

> BO05556.pep
MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAA
GKATVPAPLVEGETESATSQDFNSSSAFLGAIASASSTGSGSGSGSGSGS
GSGSGSYGLASMNSSPIAIVSYQGITSSNLGDSNTTLVPLSDTPLLLEEF
AAGEFVLPPLTSIFVSIVLLIVILGTVVGNVLVCIAVCMVRKLRRPCNYL
LVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVSFDVLCCTASI
LNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI
LGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAAR
RIVLEEKRAQTHLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGN
TSLTYSTCGGLSSGGGALAGHGSGGGVSGSTGLLGSPHHKKLRFQLAKEK
KASTTLGIIMSAFTVCWLPFFILALIRPFETMHVPASLSSLFLWLGYANS
LLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEPPSQRV
MLGDERHGARESFLASFLDH

BO05556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
5-HT7-PB 564 CG12073-PB 1..564 1..564 2915 100 Plus
5-HT7-PA 564 CG12073-PA 1..564 1..564 2915 100 Plus
Dop1R2-PA 537 CG18741-PA 115..493 169..526 566 37.1 Plus
Dop1R2-PB 539 CG18741-PB 115..493 169..526 566 37.1 Plus
Dop1R2-PC 807 CG18741-PC 115..493 169..526 566 37.1 Plus