Clone Sequence Records
BO05556.3prime Sequence
884 bp (822 high quality bases) assembled on 2005-12-02
> BO05556.3prime
ATGGTCTAGAAAGCTTGCGAGAAAGCTCTCCCTCGCCCCGTGCCTCTCAT
CGCCCAGCATCACCCGCTGCGAGGGAGGCTCGCCATACTGATCCTGGTAG
TAGTTCTCCCGCATCATGGTGTTCAGGCTGGAGCAGCGGAAGTAGAGGAT
CTCCTGGAAGGGTTTGCGGAAATCCCTGTTCAGAGTGGCGTAGATAATAG
GGTTCAGCAGGGAGTTGGCATAGCCCAGCCAGAGGAATAGAGACGAGAGC
GATGCCGGTACGTGCATTGTCTCGAAAGGACGAATTAGGGCCAGGATAAA
GAATGGCAGCCAGCAGACGGTAAAGGCCGACATGATGATGCCCAGAGTGG
TGGAGGCCTTCTTCTCTTTGGCCAGTTGAAACCGCAGCTTCTTGTGGTGC
GGAGAGCCCAGGAGTCCGGTCGAACCACTAACGCCACCCCCACTGCCGTG
CCCAGCCAGTGCGCCTCCTCCGCTGCTCAGACCCCCACAGGTGGAGTAGG
TGAGCGAAGTGTTGCCCACGCTGCTGTGCCTCTGGCCATTTCCCGAGCTG
GCCAGCTCCGTGTGGCCCAAGGGCGGAGCCTGCGGGGCCGATGGCGATCC
TGTGCCATTGAGCGCCTGTTGCAAATGCGTCTGGGCGCGTTTCTCTTCCA
GGACAATCCGCCTCGCCGCCCTGAAGATCTGGTAGTACACAAACAGCATC
ACCGAGAGTGGTATGTAAAATGAGCCCAGGGTGGCGTAGATCTGATATGC
GAAGTTCTGGCACACCGTGCAGATAGGCTGGCCCTCCTCGTCCTCGTGCT
CGTTGCCCAGGATCAGCAGAGGAGGCAATGAGATGCAGGCGGCGGCCAGC
CAGACGATGCCCACGCACAGCATCATTCGCCGAG
BO05556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12073-PA | 1695 | 5-HT7-RA | 827..1692 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
5-HT7-RB | 4486 | CG12073-RB | 1970..2835 | 884..19 | 4330 | 100 | Minus |
5-HT7-RA | 3506 | CG12073-RA | 1896..2761 | 884..19 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30969887..30970752 | 19..884 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:53:33 has no hits.
BO05556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:13 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-PA | 827..1695 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:08 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12073-PA | 827..1695 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:27 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1896..2766 | 13..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:36:39 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1896..2766 | 13..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:36:39 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30969882..30970752 | 13..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:27 Download gff for
BO05556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26795604..26796474 | 13..884 | 99 | | Plus |
BO05556.5prime Sequence
919 bp (810 high quality bases) assembled on 2005-11-29
> BO05556.5prime
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCCGCCGGCTGCATCTCATT
GCCTCCTCTGCTGATCCTG
BO05556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12073-PA | 1695 | 5-HT7-RA | 1..903 | 17..919 | 4490 | 99.8 | Plus |
CG3856-PB | 1914 | Oamb-RB | 310..344 | 752..786 | 150 | 97.1 | Plus |
CG3856-PA | 1938 | Oamb-RA | 310..344 | 752..786 | 150 | 97.1 | Plus |
CG3856-PC | 1938 | Oamb-RC | 310..344 | 752..786 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
5-HT7-RB | 4486 | CG12073-RB | 1144..2046 | 17..919 | 4500 | 99.9 | Plus |
5-HT7-RA | 3506 | CG12073-RA | 1070..1972 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30970676..30971578 | 919..17 | 4500 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:42:31 has no hits.
BO05556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:14 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:09 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12073-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:14 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1070..1972 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:08 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1070..1972 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:08 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30970676..30971578 | 17..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:14 Download gff for
BO05556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26796398..26797300 | 17..919 | 99 | | Minus |
BO05556.complete Sequence
1726 bp (1726 high quality bases) assembled on 2005-09-12
GenBank Submission: FJ630078
> BO05556.complete
GAAGTTATCAGTCGACATGGCTTTATCTGGACAGGACTGGCGGCGCCATC
AGAGCCACCGCCAGCACAGAAACCACAGAACCCAGGGAAACCACCAGAAA
CTGATCTCCACCGCCACGCTGACTCTGTTCGTGCTCTTTCTGAGCAGCTG
GATAGCCTATGCGGCGGGCAAGGCCACCGTTCCCGCTCCGCTCGTGGAAG
GCGAGACGGAGTCGGCCACTTCGCAGGACTTTAATAGCAGTAGCGCCTTC
CTGGGGGCCATAGCCTCGGCCTCATCGACGGGATCGGGATCGGGCTCGGG
CTCGGGCTCGGGATCGGGATCGGGATCAGGATCCTATGGCCTGGCCTCGA
TGAACAGCAGCCCCATTGCCATAGTCTCGTATCAAGGCATCACCAGCAGC
AATTTGGGCGACAGCAATACGACTTTGGTGCCGCTATCGGACACTCCTTT
GCTCCTGGAGGAATTTGCAGCCGGCGAGTTTGTACTGCCCCCGTTGACGT
CCATATTCGTGAGCATCGTCCTTCTCATCGTGATCCTAGGCACTGTAGTG
GGCAATGTCCTGGTCTGCATAGCCGTTTGCATGGTGCGGAAATTGAGGAG
ACCCTGCAATTACCTTTTGGTGTCCTTGGCTCTTTCGGATCTCTGTGTGG
CTCTTCTGGTGATGCCCATGGCCTTGCTTTATGAAGTGCTGGAGAAGTGG
AACTTTGGACCGCTGCTCTGCGACATCTGGGTGTCCTTCGATGTGCTGTG
CTGCACGGCCTCGATCCTGAATCTGTGTGCCATATCCGTGGATCGATACC
TGGCCATCACGAAGCCCCTGGAGTACGGCGTGAAGAGGACTCCTCGGCGA
ATGATGCTGTGCGTGGGCATCGTCTGGCTGGCCGCCGCCTGCATCTCATT
GCCTCCTCTGCTGATCCTGGGCAACGAGCACGAGGACGAGGAGGGCCAGC
CTATCTGCACGGTGTGCCAGAACTTCGCATATCAGATCTACGCCACCCTG
GGCTCATTTTACATACCACTCTCGGTGATGCTGTTTGTGTACTACCAGAT
CTTCAGGGCGGCGAGGCGGATTGTCCTGGAAGAGAAACGCGCCCAGACGC
ATTTGCAACAGGCGCTCAATGGCACAGGATCGCCATCGGCCCCGCAGGCT
CCGCCCTTGGGCCACACGGAGCTGGCCAGCTCGGGAAATGGCCAGAGGCA
CAGCAGCGTGGGCAACACTTCGCTCACCTACTCCACCTGTGGGGGTCTGA
GCAGCGGAGGAGGCGCACTGGCTGGGCACGGCAGTGGGGGTGGCGTTAGT
GGTTCGACCGGACTCCTGGGCTCTCCGCACCACAAGAAGCTGCGGTTTCA
ACTGGCCAAAGAGAAGAAGGCCTCCACCACTCTGGGCATCATCATGTCGG
CCTTTACCGTCTGCTGGCTGCCATTCTTTATCCTGGCCCTAATTCGTCCT
TTCGAGACAATGCACGTACCGGCATCGCTCTCGTCTCTATTCCTCTGGCT
GGGCTATGCCAACTCCCTGCTGAACCCTATTATCTACGCCACTCTGAACA
GGGATTTCCGCAAACCCTTCCAGGAGATCCTCTACTTCCGCTGCTCCAGC
CTGAACACCATGATGCGGGAGAACTACTACCAGGATCAGTATGGCGAGCC
TCCCTCGCAGCGGGTGATGCTGGGCGATGAGAGGCACGGGGCGAGGGAGA
GCTTTCTCGCAAGCTTTCTAGACCAT
BO05556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
5-HT7-RB | 1695 | CG12073-PB | 1..1692 | 17..1708 | 8460 | 100 | Plus |
5-HT7-RA | 1695 | CG12073-PA | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
5-HT7-RB | 4486 | CG12073-RB | 1144..2835 | 17..1708 | 8460 | 100 | Plus |
5-HT7-RA | 3506 | CG12073-RA | 1070..2761 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30969887..30971578 | 1708..17 | 8460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:24:37 has no hits.
BO05556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:37:10 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1..1695 | 17..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:05:22 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1042..2738 | 17..1714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:40:41 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1070..2761 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:37:10 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1042..2738 | 17..1714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:01 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
5-HT7-RA | 1070..2761 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:01 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30969885..30971578 | 17..1710 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:40:41 Download gff for
BO05556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26795607..26797300 | 17..1710 | 99 | | Minus |
BO05556.pep Sequence
Translation from 16 to 1726
> BO05556.pep
MALSGQDWRRHQSHRQHRNHRTQGNHQKLISTATLTLFVLFLSSWIAYAA
GKATVPAPLVEGETESATSQDFNSSSAFLGAIASASSTGSGSGSGSGSGS
GSGSGSYGLASMNSSPIAIVSYQGITSSNLGDSNTTLVPLSDTPLLLEEF
AAGEFVLPPLTSIFVSIVLLIVILGTVVGNVLVCIAVCMVRKLRRPCNYL
LVSLALSDLCVALLVMPMALLYEVLEKWNFGPLLCDIWVSFDVLCCTASI
LNLCAISVDRYLAITKPLEYGVKRTPRRMMLCVGIVWLAAACISLPPLLI
LGNEHEDEEGQPICTVCQNFAYQIYATLGSFYIPLSVMLFVYYQIFRAAR
RIVLEEKRAQTHLQQALNGTGSPSAPQAPPLGHTELASSGNGQRHSSVGN
TSLTYSTCGGLSSGGGALAGHGSGGGVSGSTGLLGSPHHKKLRFQLAKEK
KASTTLGIIMSAFTVCWLPFFILALIRPFETMHVPASLSSLFLWLGYANS
LLNPIIYATLNRDFRKPFQEILYFRCSSLNTMMRENYYQDQYGEPPSQRV
MLGDERHGARESFLASFLDH
BO05556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
5-HT7-PB | 564 | CG12073-PB | 1..564 | 1..564 | 2915 | 100 | Plus |
5-HT7-PA | 564 | CG12073-PA | 1..564 | 1..564 | 2915 | 100 | Plus |
Dop1R2-PA | 537 | CG18741-PA | 115..493 | 169..526 | 566 | 37.1 | Plus |
Dop1R2-PB | 539 | CG18741-PB | 115..493 | 169..526 | 566 | 37.1 | Plus |
Dop1R2-PC | 807 | CG18741-PC | 115..493 | 169..526 | 566 | 37.1 | Plus |