Clone Sequence Records
BO05570.3prime Sequence
940 bp (845 high quality bases) assembled on 2005-12-02
> BO05570.3prime
ATGGTCTAGAAAGCTTGCATCCCGCACTGTGGTCTGTTGGTAATAATGCG
GCGCCAGCTCCGTCAGCCACTCTCTCTTGATTACGGTCACGTAGTTCATG
AACAATTTCGTCGTTTGGAGCAGTTCCCCATAGACCACGTACTGAGCTTG
AGGAAGTGTGTAGAGAGTGGAGTTCGGATGAATGGCCAGTTCAGTGCCGC
TGCTGATTTGTCTATAAACTCCAGAGTGATGCAGATAGGCCACCTGTGTG
AAGAAGCCGGCGGTGATGCACTTGCACAACTTTTCCACATCGCCCTTGCA
CGAGAAGATTGGAATGCCGTACTTCTTTCTGGCCACTGTGATGAGTTGCT
CCCTCAGCGAGTGGGCCCTCTTAAGATTCCTGTAGATGAGGAAGTATTGG
CCACAGAACTCCTTGGTCATGCCCTCCTCCACGAAGCCAGTGTAAGCGTT
CAACATCGTAATAAAGTCCCCTTCCGCAACTTCGAATTTTCGATGTGCAA
TGCGTCCACTTTGTTGGGCAACCGCTGAAGCTGGGCGCGAAAATATAGAC
TGCACCTGCAGCAACGCAATGATGGTTATGATCTCCTCGGAGCAGCCCAT
CTGACCGGAAACATAGAGCATTTTGGAGAGCATAGCGCTGAAGGGGAGTT
CGGCCAACAGGTAACCCACGGGCTTCGTCAGATTGCCCTGCTCATCGATG
GCGTCCAAGGCAAATAGACTCTCCAGTGCGGAAAGTAGATTCTGTGCCGG
TGGTGGCGATGGGAAATCAAAGCGCAATATGTTCCCGATGCCCAGCGCCT
TTAACTGCAAGATAGCGCCGCTCAATTCGCTGCGTCGCATTTCGGGTGGC
TGCCGAGGAGCTAGTGCTTCATAGTCTGATTTAGTGTACAAACGATAGAC
CTTGCCGGGACGCATACGACCCGCTCGTCCTGCTCTCTGG
BO05570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-PA | 2037 | CG3225-RA | 1113..2034 | 940..19 | 4610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-RA | 2387 | CG3225-RA | 1192..2113 | 940..19 | 4610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4815945..4816866 | 19..940 | 4610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:42:49 has no hits.
BO05570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:37 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-PA | 1113..2037 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:44 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-PA | 1113..2037 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:18 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 1192..2117 | 13..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:47 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 1192..2117 | 13..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:47 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4815941..4816866 | 13..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:18 Download gff for
BO05570.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4815941..4816866 | 13..940 | 99 | | Plus |
BO05570.5prime Sequence
935 bp (783 high quality bases) assembled on 2005-12-02
> BO05570.5prime
GAAGTTATCAGTCGACATGAGCACTTTTAAGCCAAAGTTCCTAAAACCCG
AGACGGACGATGCAATCACAGATAGTGCCGGTGGTGAACAGCAGTCCTCC
GCCTTTGTATTCAATGTCAATCACAATATGGGACTCATGGAGCAGAGGGA
ACGTTTGCCCATTCGTCAGTACCGGGATCAAATACTTTACTGCTTGGAAA
AGCATCAAGTGGTCATACTAGTGGGTGAAACAGGCAGTGGCAAGAGCACC
CAGGTGCCACAGTATTTGTATGAATGGGGCTGGCACACCAAGGGACTCAT
TGGCATCACCGAACCACGACGCGTTTCCACCGTTACGCTGGCTAATCGCG
TGGCACAGGAACGCGGCGAACTGGTAGGTGACACGGTGGGCTATGTAGTT
CGCTTCCTGGAAAGCATGAGCTCCTGTACCAAAATCAAGTTCATGACCGA
GGGCATCTTGCTGAGGGAAGTCCTAGCCGATCCGCTGCTCACCCAATATG
GTGTTATCATCGTGGACGAGGCGCACGAGCGGAATATGCTCACCGACATG
ATTTTGGGACTGCTCAAGAAGATCCTTCGCAAACGCAGCTCGCTCAAGCT
CATCATTTCATCGGCCACCATAGATGCAAGCTTCTTCAGCGAGTTCTTCA
GCTGGCCAGGATCGGGCGAAGTGAGCGTTAAGCTAAGCATTGAAGGTCGC
ATGCATCCTGTGAGTAATTTCTATCTGAACGAACCCTGCGCCGATTATGT
GAAGGAAACTGTGGAGACCGTCTGGAAACTGCATCAAAAGGAGCCGCCTG
GCGACATTTTGGCCTTCCTAACTGGCCAGGAGGAAGTCCTGGAGGCGCTG
GATCTTCTGCGCGAATACATCGCCAGTTCGGAACAGGAGAATCTCAAGGT
GCTGCCCATGTATGGTAGTATGTCGAGCACTGATC
BO05570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-PA | 2037 | CG3225-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-RA | 2387 | CG3225-RA | 80..998 | 17..935 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:43:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4817060..4817663 | 935..332 | 3020 | 100 | Minus |
| 2L | 23513712 | 2L | 4818038..4818166 | 145..17 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 4817720..4817818 | 333..235 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 4817882..4817976 | 237..143 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:43:21 has no hits.
BO05570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:37 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:48:45 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:47 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 80..998 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:43 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 80..998 | 17..935 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:43 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4817882..4817973 | 146..237 | 100 | <- | Minus |
| 2L | 4818038..4818166 | 17..145 | 100 | | Minus |
| 2L | 4817060..4817663 | 332..935 | 100 | <- | Minus |
| 2L | 4817722..4817815 | 238..331 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:47 Download gff for
BO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4817060..4817663 | 332..935 | 100 | <- | Minus |
| arm_2L | 4817722..4817815 | 238..331 | 100 | <- | Minus |
| arm_2L | 4817882..4817973 | 146..237 | 100 | <- | Minus |
| arm_2L | 4818038..4818166 | 17..145 | 100 | | Minus |
BO05570.complete Sequence
2068 bp assembled on 2008-08-14
GenBank Submission: FJ630079
> BO05570.complete
GAAGTTATCAGTCGACATGAGCACTTTTAAGCCAAAGTTCCTAAAACCCG
AGACGGACGATGCAATCACAGATAGTGCCGGTGGTGAACAGCAGTCCTCC
GCCTTTGTATTCAATGTCAATCACAATATGGGACTCATGGAGCAGAGGGA
ACGTTTGCCCATTCGTCAGTACCGGGATCAAATACTTTACTGCTTGGAAA
AGCATCAAGTGGTCATACTAGTGGGTGAAACAGGCAGTGGCAAGAGCACC
CAGGTGCCACAGTATTTGTATGAATGGGGCTGGCACACCAAGGGACTCAT
TGGCATCACCGAACCACGACGCGTTTCCACCGTTACGCTGGCTAATCGCG
TGGCACAGGAACGCGGCGAACTGGTAGGTGACACGGTGGGCTATGTAGTT
CGCTTCCTGGAAAGCATGAGCTCCTGTACCAAAATCAAGTTCATGACCGA
GGGCATCTTGCTGAGGGAAGTCCTAGCCGATCCGCTGCTCACCCAATATG
GTGTTATCATCGTGGACGAGGCGCACGAGCGGAATATGCTCACCGACATG
ATTTTGGGACTGCTCAAGAAGATCCTTCGCAAACGCAGCTCGCTCAAGCT
CATCATTTCATCGGCCACCATAGATGCAAGCTTCTTCAGCGAGTTCTTCA
GCTGGCCAGGATCGGGCGAAGTGAGCGTTAAGCTAAGCATTGAAGGTCGC
ATGCATCCTGTGAGTAATTTCTATCTGAACGAACCCTGCGCCGATTATGT
GAAGGAAACTGTGGAGACCGTCTGGAAACTGCATCAAAAGGAGCCGCCTG
GCGACATTTTGGCCTTCCTAACTGGCCAGGAGGAAGTCCTGGAGGCGCTG
GATCTTCTGCGCGAATACATCGCCAGTTCGGAACAGGAGAATCTCAAGGT
GCTGCCCATGTATGGTAGTATGTCGAGCACTGATCAGTTGTCGGTATTCT
TTACCCCGCCCAAAGGAACCCGCAAAGTGGTGCTGGCCACGAATATAGCA
GAGACCTCCATCACCATTCCGGGCATTGTTTATGTGATAGACTGCGGCTA
CGTCAAGGTAAAATGGTACAATCCCAAAACCTGCAGTGACAGTTTGGTTA
TAGTGCCCGTCAGCAAGGCGTCGGCCATCCAGAGAGCAGGACGAGCGGGT
CGTATGCGTCCCGGCAAGGTCTATCGTTTGTACACTAAATCAGACTATGA
AGCACTAGCTCCTCGGCAGCCACCCGAAATGCGACGCAGCGAATTGAGCG
GCGCTATCTTGCAGTTAAAGGCGCTGGGCATCGGGAACATATTGCGCTTT
GATTTCCCATCGCCACCACCGGCACAGAATCTACTTTCCGCACTGGAGAG
TCTATTTGCCTTGGACGCCATCGATGAGCAGGGCAATCTGACGAAGCCCG
TGGGTTACCTGTTGGCCGAACTCCCCTTCAGCGCTATGCTCTCCAAAATG
CTCTATGTTTCCGGTCAGATGGGCTGCTCCGAGGAGATCATAACCATCAT
TGCGTTGCTGCAGGTGCAGTCTATATTTTCGCGCCCAGCTTCAGCGGTTG
CCCAACAAAGTGGACGCATTGCACATCGAAAATTCGAAGTTGCGGAAGGG
GACTTTATTACGATGTTGAACGCTTACACTGGCTTCGTGGAGGAGGGCAT
GACCAAGGAGTTCTGTGGCCAATACTTCCTCATCTACAGGAATCTTAAGA
GGGCCCACTCGCTGAGGGAGCAACTCATCACAGTGGCCAGAAAGAAGTAC
GGCATTCCAATCTTCTCGTGCAAGGGCGATGTGGAAAAGTTGTGCAAGTG
CATCACCGCCGGCTTCTTCACACAGGTGGCCTATCTGCATCACTCTGGAG
TTTATAGACAAATCAGCAGCGGCACTGAACTGGCCATTCATCCGAACTCC
ACTCTCTACACACTTCCTCAAGCTCAGTACGTGGTCTATGGGGAACTGCT
CCAAACGACGAAATTGTTCATGAACTACGTGACCGTAATCAAGAGAGAGT
GGCTGACGGAGCTGGCGCCGCATTATTACCAACAGACCACAGTGCGGGAT
GCAAGCTTTCTAGACCAT
BO05570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-RA | 2037 | CG3225-PA | 1..2034 | 17..2050 | 10170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-RA | 2387 | CG3225-RA | 80..2113 | 17..2050 | 10170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4815945..4817663 | 2050..332 | 8595 | 100 | Minus |
| 2L | 23513712 | 2L | 4818038..4818166 | 145..17 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 4817720..4817818 | 333..235 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 4817882..4817976 | 237..143 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:13 has no hits.
BO05570.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:47 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 45..2082 | 17..2056 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:49 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 80..2113 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:29 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 45..2078 | 17..2052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:51 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3225-RA | 80..2113 | 17..2052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:51 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4815941..4817663 | 332..2052 | 99 | <- | Minus |
| 2L | 4817722..4817815 | 238..331 | 100 | <- | Minus |
| 2L | 4817882..4817973 | 146..237 | 100 | <- | Minus |
| 2L | 4818038..4818166 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:49 Download gff for
BO05570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4815941..4817663 | 332..2052 | 99 | <- | Minus |
| arm_2L | 4817722..4817815 | 238..331 | 100 | <- | Minus |
| arm_2L | 4817882..4817973 | 146..237 | 100 | <- | Minus |
| arm_2L | 4818038..4818166 | 17..145 | 100 | | Minus |
BO05570.pep Sequence
Translation from 16 to 2068
> BO05570.pep
MSTFKPKFLKPETDDAITDSAGGEQQSSAFVFNVNHNMGLMEQRERLPIR
QYRDQILYCLEKHQVVILVGETGSGKSTQVPQYLYEWGWHTKGLIGITEP
RRVSTVTLANRVAQERGELVGDTVGYVVRFLESMSSCTKIKFMTEGILLR
EVLADPLLTQYGVIIVDEAHERNMLTDMILGLLKKILRKRSSLKLIISSA
TIDASFFSEFFSWPGSGEVSVKLSIEGRMHPVSNFYLNEPCADYVKETVE
TVWKLHQKEPPGDILAFLTGQEEVLEALDLLREYIASSEQENLKVLPMYG
SMSSTDQLSVFFTPPKGTRKVVLATNIAETSITIPGIVYVIDCGYVKVKW
YNPKTCSDSLVIVPVSKASAIQRAGRAGRMRPGKVYRLYTKSDYEALAPR
QPPEMRRSELSGAILQLKALGIGNILRFDFPSPPPAQNLLSALESLFALD
AIDEQGNLTKPVGYLLAELPFSAMLSKMLYVSGQMGCSEEIITIIALLQV
QSIFSRPASAVAQQSGRIAHRKFEVAEGDFITMLNAYTGFVEEGMTKEFC
GQYFLIYRNLKRAHSLREQLITVARKKYGIPIFSCKGDVEKLCKCITAGF
FTQVAYLHHSGVYRQISSGTELAIHPNSTLYTLPQAQYVVYGELLQTTKL
FMNYVTVIKREWLTELAPHYYQQTTVRDASFLDH
BO05570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3225-PA | 678 | CG3225-PA | 1..678 | 1..678 | 3477 | 100 | Plus |
| pea-PA | 1242 | CG8241-PA | 554..1203 | 11..672 | 1323 | 43.2 | Plus |
| l(2)37Cb-PA | 894 | CG10689-PA | 245..879 | 40..680 | 1288 | 43.6 | Plus |
| CG11107-PB | 729 | CG11107-PB | 65..699 | 40..671 | 1215 | 41.3 | Plus |
| CG11107-PA | 729 | CG11107-PA | 65..699 | 40..671 | 1215 | 41.3 | Plus |
