Clone Sequence Records
BO05579.3prime Sequence
956 bp (818 high quality bases) assembled on 2005-12-02
> BO05579.3prime
ATGGTCTAGAAAGCTTGCTTTGGAGCCCAACCCGTTGGCCACCAAAGCAC
CTGGAGTGGCGGCGGCCACAGCAGCAGCCGCGGCTCCACCGCCCCCTCCA
CCCCCGCCTCCTCCTCCGCCACCGGATTGGCCTCCGCTTCCCGCTCCCGT
ACCGACGGCTATTCCTGCACCAGGACCGCCGACCGGAGCACTGACCGCTT
CCCGGGCGCCTGCTGCAGCAGCCGCAGCAGCTGCCGCCGCCTGCAGGTGG
GCCGCTGAGTTGGGAGTGGGTGGTGAGCGGGTGGCCATCGCGTTGCGCAG
ACTCAGGTTGCTGGCCGAGTGCAGGTGCTTGGCGCTCAGCTCACTGGCCC
GGGTGTTGCCACAAACCTGATGGTGACTATCCCAATCCCTGTACTGACAC
GAGGCGCTGCAATATCGGGCCATGTTGCAGCCGGAACAGGTCTCCGTTGC
CTTGCGCCCGCAGTTCCAGCACTGCTGCTGCAGATTGCTGCCATTCTGTG
CACTGGCCATTGACGGCGACTTGTTGTCCAGATCGCGTTCTCCGCTGGAA
TGGCGGCTCATCTCCATGAAGAACTTCTCCATGCGCAGGCGTTCCTGCGT
CATGATCTCAGCAGCTCGAGTTTCAGCGGCCACCACTGCCCTCTGGATTT
CAATGACAGCTTGGCGTTTCACCTGTGTCACTGCATCCTCCGCATTCCGT
TTGAACTCGGCGACCTTCTCCTCCGTCTGGCGTCGCAGCTCCGCCATGGC
CGCGGGAGTTACCTCCTGGCCGCTGTTGGGATGCTGGGGCTCGATGCCCC
GCTGCTGGAGGATCGTGATGGCCCGCTTCGTCTTGTCCACCATGGCGGAG
ATGCAGTTGAGCATGGTGTGGATGTTCTTCCACTCCTCCTCGCCACCCGC
TCCCGGAGCTCCAGGAGCAGCTGCATTGGGATGGGGCTGTGGGTTTCCTG
CCCTTT
BO05579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3385-PA | 2232 | nvy-RA | 1292..2229 | 956..19 | 4665 | 99.8 | Minus |
| CG11172-PA | 4260 | NFAT-RA | 485..512 | 210..237 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 1687..2624 | 956..19 | 4675 | 99.9 | Minus |
| nvy-RC | 3104 | CG3385-RC | 1365..2302 | 956..19 | 4675 | 99.9 | Minus |
| nvy-RB | 3097 | CG3385-RB | 1358..2295 | 956..19 | 4675 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24289932..24290282 | 369..19 | 1755 | 100 | Minus |
| 2R | 25286936 | 2R | 24289066..24289353 | 956..669 | 1425 | 99.7 | Minus |
| 2R | 25286936 | 2R | 24289440..24289623 | 675..492 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 24289681..24289808 | 492..365 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:48:49 has no hits.
BO05579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:52 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1292..2232 | 16..956 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:04 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1292..2232 | 16..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:09:55 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RB | 1358..2305 | 9..956 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:16 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RB | 1358..2305 | 9..956 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:16 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24289443..24289622 | 493..672 | 100 | -> | Minus |
| 2R | 24289681..24289806 | 367..492 | 100 | -> | Minus |
| 2R | 24289935..24290292 | 9..366 | 98 | | Minus |
| 2R | 24289066..24289349 | 673..956 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:09:55 Download gff for
BO05579.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20176589..20176872 | 673..956 | 99 | -> | Minus |
| arm_2R | 20176966..20177145 | 493..672 | 100 | -> | Minus |
| arm_2R | 20177204..20177329 | 367..492 | 100 | -> | Minus |
| arm_2R | 20177458..20177815 | 9..366 | 98 | | Minus |
BO05579.5prime Sequence
865 bp (853 high quality bases) assembled on 2005-12-02
> BO05579.5prime
GAAGTTATCAGTCGACATGATGGCGCTCGACGGCAAGGCGATAATTAAGG
AGGAGATTACCGACAAGGACGCTTACGACGCAGCTGCGGCGGCGGCAGCG
GCGGTGGCAGCGGGAGCCGCTCTGGCGGTGGCCTCTGCTGCGGCCGTCCA
GGTGCCACCCGCGTCATCGTCCTCGGCGGGATCAGCGTCATCGGCAGCCG
CCGCGGCCACCAACAACACAACATCGGCGGCAGCCACAGCGGCGGCAATT
AGTCGTCGGCTTAAAGCCAGCAGCAGCGGCGGGGACAAGAGCTCCACCTC
ATCCTCGAGCAGCAAGGACAGCAGCCACACCTCCAGCAGCAGGAGCGAGA
GGGACAGGGAGAGGGAGCGAGAACGGGAGCGGGAACGCGACCGCCTGTGC
CGCACTCCGCCGGACTCTCCGCCGGACAGCTCGCGCAGCCTGGCCCCCCG
CTCGCCCCACTCCCCACTACAGTTGCACCAGCATCCGCAGCGCAACGCCA
GCGTTTCCCCGGTGGTCAATGGATCCTCCTCGGGTGGAGGAGGCGTGGGA
TCCTCCGGCACTTCGCCTACGCCCACACCGGGCAGTCAGCATGCCGCCTC
CTTGGCCGCAGCCGCCGCCGCCGCTGCAGCCGCCCACGTGGAGCAGGCGC
GACTGGTTTCCAAGATGCGCAAGTTCCTGGGCGCCCTGGTCCAATTCTCC
CAGGAACTGGGACAGCCGGAGGTGTGCGAAAGGGTGCGCGCCCTGGTGCT
GTCCCTCTGCAGCGGCAGCATCTCCGTGGAGGAGTTCCGGCTGGCCCTGC
AGGAGGCCATCAACCTGCCACTCCGGCCCTATGTGGTTCCGCTCCTCAAA
ACAGCATCGCTCTGG
BO05579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3385-PA | 2232 | nvy-RA | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..1245 | 17..865 | 4225 | 99.9 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..1245 | 17..865 | 4225 | 99.9 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..923 | 19..865 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24288624 | 265..865 | 2960 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 19..266 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 19:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 248..94 | 137 | 56.9 | Minus |
BO05579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:25:52 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1..850 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:06 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1..850 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:48 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1245 | 7..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:45 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1245 | 7..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:45 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24284819..24285074 | 8..266 | 98 | -> | Plus |
| 2R | 24288025..24288624 | 267..865 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:48 Download gff for
BO05579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172342..20172597 | 8..266 | 98 | -> | Plus |
| arm_2R | 20175548..20176147 | 267..865 | 99 | | Plus |
BO05579.complete Sequence
2263 bp assembled on 2007-03-23
GenBank Submission: FJ630080
> BO05579.complete
GAAGTTATCAGTCGACATGATGGCGCTCGACGGCAAGGCGATAATTAAGG
AGGAGATTACCGACAAGGACGCTTACGACGCAGCTGCGGCGGCGGCAGCG
GCGGTGGCAGCGGGAGCCGCTCTGGCGGTGGCCTCTGCTGCGGCCGTCCA
GGTGCCACCCGCGTCATCGTCCTCGGCGGGATCAGCGTCATCGGCAGCCG
CCGCGGCCACCAACAACACAACATCGGCGGCAGCCACAGCGGCGGCAATT
AGTCGTCGGCTTAAAGCCAGCAGCAGCGGCGGGGACAAGAGCTCCACCTC
ATCCTCGAGCAGCAAGGACAGCAGCCACACCTCCAGCAGCAGGAGCGAGA
GGGACAGGGAGAGGGAGCGAGAACGGGAGCGGGAACGCGACCGCCTGTGC
CGCACTCCGCCGGACTCTCCGCCGGACAGCTCGCGCAGCCTGGCCCCCCG
CTCGCCCCACTCCCCACTACAGTTGCACCAGCATCCGCAGCGCAACGCCA
GCGTTTCCCCGGTGGTCAATGGATCCTCCTCGGGTGGAGGAGGCGTGGGA
TCCTCCGGCACTTCGCCTACGCCCACACCGGGCAGTCAGCATGCCGCCTC
CTTGGCCGCAGCCGCCGCCGCCGCTGCAGCCGCCCACGTGGAGCAGGCGC
GACTGGTTTCCAAGATGCGCAAGTTCCTGGGCGCCCTGGTCCAATTCTCC
CAGGAACTGGGACAGCCGGAGGTGTGCGAAAGGGTGCGCGCCCTGGTGCT
GTCCCTCTGCAGCGGCAGCATCTCCGTGGAGGAGTTCCGGCTGGCCCTGC
AGGAGGCCATCAACCTGCCACTCCGGCCCTATGTGGTTCCGCTCCTCAAA
AACAGCATCGCTCTGGTGCAGCGGGAGATTCTGGCACTGGCCAGAGCCAC
CAACCAATCCGCCCTGCAGTACGTGACCAACAACGAGCAGGCGGTGATGG
AGTTCGCTCCCCACGGAGTGGCCAGTGCCGAGTTCGGGGACATATTCATT
CAGCTGGAGGCACCCACATCAAACGGCAGCAGTGCGGTCTTCAAGCGCCG
CTCCTCGGACTCCATGATGGAGCATGGCGGCCACAACGGCCTGCAGGAGT
GGAACGAATACATGGCCAGCGGCGGAGCGGGCTATCCTCCACCGCCCAGC
AAGCGCCTCACACTGCATCCCGCCCACTCGGTGGTGGCCTACGGGGAATA
CGGGGTATCGTCCGCGGAAGGACTGCCCTCGGCGGCGGCCTTCATGCAGC
GCGACGAACGGGATCTGCGGATGAGCGAGGCGCAGGCCAGGCACGCCGCT
CCTCCACAAAGGGCAGGAAACCCACAGCCCAATCCCAATGCAGCTGCTCC
TGGAGCTCCGGGAGCGGGTGGCGAGGAGGAGTGGAAGAACATCCACACCA
TGCTCAACTGCATCTCCGCCATGGTGGACAAGACGAAGCGGGCCATCACG
ATCCTCCAGCAGCGGGGCATCGAGCCCCAGCATCCCAACAGCGGCCAGGA
GGTAACTCCCGCGGCCATGGCGGAGCTGCGACGCCAGACGGAGGAGAAGG
TCGCCGAGTTCAAACGGAATGCGGAGGATGCAGTGACACAGGTGAAACGC
CAAGCTGTCATTGAAATCCAGAGGGCAGTGGTGGCCGCTGAAACTCGAGC
TGCTGAGATCATGACGCAGGAACGCCTGCGCATGGAGAAGTTCTTCATGG
AGATGAGCCGCCATTCCAGCGGAGAACGCGATCTGGACAACAAGTCGCCG
TCAATGGCCAGTGCACAGAATGGCAGCAATCTGCAGCAGCAGTGCTGGAA
CTGCGGGCGCAAGGCAACGGAGACCTGTTCCGGCTGCAACATGGCCCGAT
ATTGCAGCGCCTCGTGTCAGTACAGGGATTGGGATAGTCACCATCAGGTT
TGTGGCAACACCCGGGCCAGTGAGCTGAGCGCCAAGCACCTGCACTCGGC
CAGCAACCTGAGTCTGCGCAACGCGATGGCCACCCGCTCACCACCCACTC
CCAACTCAGCGGCCCACCTGCAGGCGGCGGCAGCTGCTGCGGCTGCTGCA
GCAGGCGCCCGGGAAGCGGTCAGTGCTCCGGTCGGCGGTCCTGGTGCAGG
AATAGCCGTCGGTACGGGAGCGGGAAGCGGAGGCCAATCCGGTGGCGGAG
GAGGAGGCGGGGGTGGAGGGGGCGGTGGAGCCGCGGCTGCTGCTGTGGCC
GCCGCCACTCCAGGTGCTTTGGTGGCCAACGGGTTGGGCTCCAAAGCAAG
CTTTCTAGACCAT
BO05579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 2274 | CG3385-PD | 1..2229 | 17..2245 | 11145 | 100 | Plus |
| nvy-RA | 2232 | CG3385-PA | 1..2229 | 17..2245 | 11145 | 100 | Plus |
| nvy-RC | 2229 | CG3385-PC | 1..2226 | 20..2245 | 11130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..2624 | 17..2245 | 11145 | 100 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..2624 | 17..2245 | 11145 | 100 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..2302 | 19..2245 | 11135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24289353 | 265..1595 | 6655 | 100 | Plus |
| 2R | 25286936 | 2R | 24289932..24290282 | 1895..2245 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 19..266 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 24289440..24289623 | 1589..1772 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 24289681..24289808 | 1772..1899 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 248..94 | 137 | 56.9 | Minus |
BO05579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:45 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 1..2232 | 17..2248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:01 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 383..2631 | 7..2255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:18 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 396..2624 | 17..2247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:45 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 383..2631 | 7..2255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:18 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 396..2624 | 17..2247 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:18 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24289681..24289806 | 1772..1897 | 100 | -> | Plus |
| 2R | 24289443..24289622 | 1592..1771 | 100 | -> | Plus |
| 2R | 24284826..24285074 | 17..266 | 99 | -> | Plus |
| 2R | 24288025..24289349 | 267..1591 | 100 | -> | Plus |
| 2R | 24289935..24290282 | 1898..2247 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:18 Download gff for
BO05579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172349..20172597 | 17..266 | 99 | -> | Plus |
| arm_2R | 20175548..20176872 | 267..1591 | 100 | -> | Plus |
| arm_2R | 20176966..20177145 | 1592..1771 | 100 | -> | Plus |
| arm_2R | 20177204..20177329 | 1772..1897 | 100 | -> | Plus |
| arm_2R | 20177458..20177805 | 1898..2247 | 99 | | Plus |
BO05579.pep Sequence
Translation from 16 to 2263
> BO05579.pep
MMALDGKAIIKEEITDKDAYDAAAAAAAAVAAGAALAVASAAAVQVPPAS
SSSAGSASSAAAAATNNTTSAAATAAAISRRLKASSSGGDKSSTSSSSSK
DSSHTSSSRSERDRERERERERERDRLCRTPPDSPPDSSRSLAPRSPHSP
LQLHQHPQRNASVSPVVNGSSSGGGGVGSSGTSPTPTPGSQHAASLAAAA
AAAAAAHVEQARLVSKMRKFLGALVQFSQELGQPEVCERVRALVLSLCSG
SISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILALARATNQSAL
QYVTNNEQAVMEFAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSM
MEHGGHNGLQEWNEYMASGGAGYPPPPSKRLTLHPAHSVVAYGEYGVSSA
EGLPSAAAFMQRDERDLRMSEAQARHAAPPQRAGNPQPNPNAAAPGAPGA
GGEEEWKNIHTMLNCISAMVDKTKRAITILQQRGIEPQHPNSGQEVTPAA
MAELRRQTEEKVAEFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMT
QERLRMEKFFMEMSRHSSGERDLDNKSPSMASAQNGSNLQQQCWNCGRKA
TETCSGCNMARYCSASCQYRDWDSHHQVCGNTRASELSAKHLHSASNLSL
RNAMATRSPPTPNSAAHLQAAAAAAAAAAGAREAVSAPVGGPGAGIAVGT
GAGSGGQSGGGGGGGGGGGGGAAAAAVAAATPGALVANGLGSKASFLDH
BO05579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-PD | 757 | CG3385-PD | 1..743 | 1..743 | 3748 | 100 | Plus |
| nvy-PA | 743 | CG3385-PA | 1..743 | 1..743 | 3748 | 100 | Plus |
| nvy-PC | 742 | CG3385-PC | 1..742 | 2..743 | 3743 | 100 | Plus |
| nvy-PB | 742 | CG3385-PB | 1..742 | 2..743 | 3743 | 100 | Plus |
| fru-PA | 516 | CG14307-PA | 196..434 | 22..205 | 182 | 31.7 | Plus |
