Clone Sequence Records
BO05601.3prime Sequence
962 bp (886 high quality bases) assembled on 2005-12-02
> BO05601.3prime
ATGGTCTAGAAAGCTTGCGAAATTAAATAGACGCCCTATCAGGGCATTAA
ACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTTG
AGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGGT
TTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTCC
GGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACAA
CGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCACC
GTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCACA
CCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGTG
GTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCGA
CTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACAT
TCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGGC
GCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATCC
CAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGCG
CCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCAG
AACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGGT
GCCATTTAAATAACATCTGCCATGCTGACAGGCAATCGGACAGGTGTGAA
TACAGGCACCATGTTCGTTACGGACAAACTCTGCGAAGCACTCGCAAACG
CCAGGACTGCGACAGAAGCCATTACGGCAGTTGTCTGGCGAAGATGCGGA
GCAGTCCGGCACACATTCATTGGCATACGGATCGCGACGGTAGCCTGCAC
AACAGACCTCTA
BO05601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 263..1206 | 962..19 | 4720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1286 | CG33119-RA | 304..1247 | 962..19 | 4720 | 100 | Minus |
NimB1-RB | 1289 | CG33119-RB | 304..1250 | 962..19 | 4680 | 99.7 | Minus |
NimB4-RA | 1478 | CG33115-RA | 796..878 | 602..520 | 205 | 83.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963970..13964457 | 962..475 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 13964795..13965049 | 273..19 | 1275 | 100 | Minus |
2L | 23513712 | 2L | 13964535..13964738 | 475..272 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 13968941..13969023 | 520..602 | 205 | 83.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:24 has no hits.
BO05601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:17 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 264..1209 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:38 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 264..1209 | 16..961 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:36 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 305..1247 | 19..961 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:48 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 305..1247 | 19..961 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:48 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963971..13964456 | 476..961 | 100 | -> | Minus |
2L | 13964535..13964738 | 272..475 | 100 | -> | Minus |
2L | 13964797..13965049 | 19..271 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:36 Download gff for
BO05601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963971..13964456 | 476..961 | 100 | -> | Minus |
arm_2L | 13964535..13964738 | 272..475 | 100 | -> | Minus |
arm_2L | 13964797..13965049 | 19..271 | 100 | | Minus |
BO05601.5prime Sequence
920 bp (875 high quality bases) assembled on 2005-11-29
> BO05601.5prime
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGGCCAAGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCT
BO05601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33119-PA | 1209 | CG33119-RA | 1..904 | 17..920 | 4445 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RB | 1289 | CG33119-RB | 42..945 | 17..920 | 4475 | 99.8 | Plus |
NimB1-RA | 1286 | CG33119-RA | 42..945 | 17..920 | 4475 | 99.8 | Plus |
NimB4-RA | 1478 | CG33115-RA | 796..878 | 639..721 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963899..13964457 | 208..766 | 2795 | 100 | Plus |
2L | 23513712 | 2L | 13963548..13963738 | 17..207 | 955 | 100 | Plus |
2L | 23513712 | 2L | 13964535..13964689 | 766..920 | 730 | 98.1 | Plus |
2L | 23513712 | 2L | 13968941..13969023 | 721..639 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:49:00 has no hits.
BO05601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:18 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:40 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:26 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 35..945 | 10..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:39 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 35..945 | 10..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:39 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963541..13963738 | 10..207 | 98 | -> | Plus |
2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
2L | 13964535..13964689 | 766..920 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:26 Download gff for
BO05601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963541..13963738 | 10..207 | 98 | -> | Plus |
arm_2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
arm_2L | 13964535..13964689 | 766..920 | 98 | | Plus |
BO05601.complete Sequence
1240 bp (1240 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630081
> BO05601.complete
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGT
GTCGGCCAAAGTGTGAGAGATTCTGCGGCAAATACGGGCGTTGTGTGGCT
CCCGAAATCTGCGGCTGTGGTGAGGGTCAACAGCATTGCCGGAACGGAAG
CTGTGACGATATCGAGCACTGCAGTTGCCCATCGGGGGAAACCCACTTCA
TCGATCGCTGTTTGAAGGCGGACCGCCTCAGTCAGCATCTCAACACTAGC
GAAAAGAGAAAGCACTTCAATCGCCAACTTGCTTATGAGTTTAATGCCCT
GATAGGGCGTCTATTTAATTTCGCAAGCTTTCTAGACCAT
BO05601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1209 | CG33119-PA | 1..1206 | 17..1222 | 6030 | 100 | Plus |
NimB1-RB | 1212 | CG33119-PB | 1..1209 | 17..1222 | 5965 | 99.8 | Plus |
NimB4-RA | 1347 | CG33115-PA | 728..810 | 639..721 | 205 | 83.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-RA | 1286 | CG33119-RA | 42..1247 | 17..1222 | 6030 | 100 | Plus |
NimB1-RB | 1289 | CG33119-RB | 42..1250 | 17..1222 | 5965 | 99.8 | Plus |
NimB4-RA | 1478 | CG33115-RA | 796..878 | 639..721 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13963899..13964457 | 208..766 | 2795 | 100 | Plus |
2L | 23513712 | 2L | 13964795..13965049 | 968..1222 | 1275 | 100 | Plus |
2L | 23513712 | 2L | 13964535..13964738 | 766..969 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 13963548..13963738 | 17..207 | 955 | 100 | Plus |
2L | 23513712 | 2L | 13968941..13969023 | 721..639 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:55:36 has no hits.
BO05601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:29 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-RA | 1..1209 | 17..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:07 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nimB1-RA | 3..1208 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:55 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 42..1247 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:30 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33119-RA | 3..1208 | 17..1222 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:56 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NimB1-RA | 42..1247 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:56 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13963548..13963738 | 17..207 | 100 | -> | Plus |
2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
2L | 13964535..13964738 | 766..969 | 100 | -> | Plus |
2L | 13964797..13965049 | 970..1224 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:55 Download gff for
BO05601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13963548..13963738 | 17..207 | 100 | -> | Plus |
arm_2L | 13963899..13964456 | 208..765 | 100 | -> | Plus |
arm_2L | 13964535..13964738 | 766..969 | 100 | -> | Plus |
arm_2L | 13964797..13965049 | 970..1224 | 99 | | Plus |
BO05601.pep Sequence
Translation from 16 to 1240
> BO05601.pep
MHCSGPLAGLTALLTLVAFPVQIKTDSTVSTELYGDIENTEYGDFESLSQ
TRERQQHLCHREVPSVFFQTERDSPVRGNGSTIYFHRIEVCCAGYRRDPY
ANECVPDCSASSPDNCRNGFCRSPGVCECFAEFVRNEHGACIHTCPIACQ
HGRCYLNGTCVCHQNFVLDQETRQFCRPKCSQSCGTHEECVAPGQCDCSP
GYRRTPDLGCQPVCAPDCGFGKCVAPNQCECFAGFIKRPNWNVCEAECYL
NCENGLCESRYKCHCREGYRYDVNTTSCLPECSDNCGQGNGVCIAPGVCR
CFRGYEVHGAECRPKCERFCGKYGRCVAPEICGCGEGQQHCRNGSCDDIE
HCSCPSGETHFIDRCLKADRLSQHLNTSEKRKHFNRQLAYEFNALIGRLF
NFASFLDH
BO05601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NimB1-PA | 402 | CG33119-PA | 1..402 | 1..402 | 2337 | 100 | Plus |
NimB1-PB | 403 | CG33119-PB | 1..403 | 1..402 | 2325 | 99.8 | Plus |
NimB4-PA | 448 | CG33115-PA | 92..444 | 59..407 | 977 | 47.8 | Plus |
NimB2-PA | 421 | CG31839-PA | 134..406 | 58..337 | 568 | 40 | Plus |
NimB5-PC | 315 | CG16873-PC | 92..314 | 53..280 | 516 | 44.2 | Plus |
NimB2-PA | 421 | CG31839-PA | 167..337 | 198..357 | 318 | 36.9 | Plus |
NimB2-PA | 421 | CG31839-PA | 270..409 | 91..237 | 255 | 39.6 | Plus |
NimB2-PA | 421 | CG31839-PA | 167..313 | 231..365 | 208 | 32.7 | Plus |
NimB2-PA | 421 | CG31839-PA | 302..421 | 91..213 | 199 | 35.4 | Plus |