Clone BO05601 Report

Search the DGRC for BO05601

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptnimB1-RA
Protein status:BO05601.pep: validated full length
Sequenced Size:1240

Clone Sequence Records

BO05601.3prime Sequence

962 bp (886 high quality bases) assembled on 2005-12-02

> BO05601.3prime
ATGGTCTAGAAAGCTTGCGAAATTAAATAGACGCCCTATCAGGGCATTAA
ACTCATAAGCAAGTTGGCGATTGAAGTGCTTTCTCTTTTCGCTAGTGTTG
AGATGCTGACTGAGGCGGTCCGCCTTCAAACAGCGATCGATGAAGTGGGT
TTCCCCCGATGGGCAACTGCAGTGCTCGATATCGTCACAGCTTCCGTTCC
GGCAATGCTGTTGACCCTCACCACAGCCGCAGATTTCGGGAGCCACACAA
CGCCCGTATTTGCCGCAGAATCTCTCACACTTTGGCCGACACTCGGCACC
GTGGACCTCGTATCCTCGGAAGCAGCGGCACACTCCGGGCGCAATGCACA
CCCCATTTCCTTGGCCACAGTTGTCGCTGCACTCCGGCAAACAGCTGGTG
GTGTTCACGTCGTAGCGATATCCTTCGCGGCAGTGACACTTGTACCGCGA
CTCACAGAGCCCATTCTCGCAGTTCAGGTAGCACTCAGCTTCGCATACAT
TCCAATTGGGCCGTTTAATGAACCCGGCGAAGCACTCGCACTGGTTGGGC
GCCACGCACTTGCCAAATCCGCAGTCCGGAGCACAAACCGGTTGGCATCC
CAAGTCCGGCGTTCTCCGGTAGCCGGGTGAGCAGTCGCACTGGCCGGGCG
CCACACACTCCTCATGGGTGCCACATGACTGCGAACACTTCGGCCGGCAG
AACTGCCGGGTCTCCTGATCCAGGACAAAGTTCTGATGGCAGACACAGGT
GCCATTTAAATAACATCTGCCATGCTGACAGGCAATCGGACAGGTGTGAA
TACAGGCACCATGTTCGTTACGGACAAACTCTGCGAAGCACTCGCAAACG
CCAGGACTGCGACAGAAGCCATTACGGCAGTTGTCTGGCGAAGATGCGGA
GCAGTCCGGCACACATTCATTGGCATACGGATCGCGACGGTAGCCTGCAC
AACAGACCTCTA

BO05601.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 263..1206 962..19 4720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1286 CG33119-RA 304..1247 962..19 4720 100 Minus
NimB1-RB 1289 CG33119-RB 304..1250 962..19 4680 99.7 Minus
NimB4-RA 1478 CG33115-RA 796..878 602..520 205 83.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963970..13964457 962..475 2440 100 Minus
2L 23513712 2L 13964795..13965049 273..19 1275 100 Minus
2L 23513712 2L 13964535..13964738 475..272 1020 100 Minus
2L 23513712 2L 13968941..13969023 520..602 205 83.1 Plus
Blast to na_te.dros performed on 2015-02-12 01:21:24 has no hits.

BO05601.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:17 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 264..1209 16..961 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:38 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 264..1209 16..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:36 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 305..1247 19..961 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:48 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 305..1247 19..961 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:48 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13963971..13964456 476..961 100 -> Minus
2L 13964535..13964738 272..475 100 -> Minus
2L 13964797..13965049 19..271 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:36 Download gff for BO05601.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963971..13964456 476..961 100 -> Minus
arm_2L 13964535..13964738 272..475 100 -> Minus
arm_2L 13964797..13965049 19..271 100   Minus

BO05601.5prime Sequence

920 bp (875 high quality bases) assembled on 2005-11-29

> BO05601.5prime
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGGCCAAGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCT

BO05601.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33119-PA 1209 CG33119-RA 1..904 17..920 4445 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RB 1289 CG33119-RB 42..945 17..920 4475 99.8 Plus
NimB1-RA 1286 CG33119-RA 42..945 17..920 4475 99.8 Plus
NimB4-RA 1478 CG33115-RA 796..878 639..721 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963899..13964457 208..766 2795 100 Plus
2L 23513712 2L 13963548..13963738 17..207 955 100 Plus
2L 23513712 2L 13964535..13964689 766..920 730 98.1 Plus
2L 23513712 2L 13968941..13969023 721..639 205 83.1 Minus
Blast to na_te.dros performed on 2015-02-13 11:49:00 has no hits.

BO05601.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:18 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:40 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33119-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:26 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 35..945 10..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:39 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 35..945 10..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:39 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13963541..13963738 10..207 98 -> Plus
2L 13963899..13964456 208..765 100 -> Plus
2L 13964535..13964689 766..920 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:26 Download gff for BO05601.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963541..13963738 10..207 98 -> Plus
arm_2L 13963899..13964456 208..765 100 -> Plus
arm_2L 13964535..13964689 766..920 98   Plus

BO05601.complete Sequence

1240 bp (1240 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630081

> BO05601.complete
GAAGTTATCAGTCGACATGCACTGTAGTGGACCGTTGGCCGGGCTTACCG
CTCTACTGACGCTGGTGGCATTTCCTGTCCAGATTAAGACCGATTCCACG
GTTTCCACGGAGCTCTACGGCGACATAGAGAATACGGAGTACGGCGATTT
TGAGTCACTAAGTCAAACTCGCGAGCGTCAGCAACATCTGTGCCATCGCG
AGGTGCCTTCTGTGTTTTTCCAAACCGAGCGGGATTCCCCGGTGCGTGGT
AATGGATCCACGATCTACTTCCATCGCATAGAGGTCTGTTGTGCAGGCTA
CCGTCGCGATCCGTATGCCAATGAATGTGTGCCGGACTGCTCCGCATCTT
CGCCAGACAACTGCCGTAATGGCTTCTGTCGCAGTCCTGGCGTTTGCGAG
TGCTTCGCAGAGTTTGTCCGTAACGAACATGGTGCCTGTATTCACACCTG
TCCGATTGCCTGTCAGCATGGCAGATGTTATTTAAATGGCACCTGTGTCT
GCCATCAGAACTTTGTCCTGGATCAGGAGACCCGGCAGTTCTGCCGGCCG
AAGTGTTCGCAGTCATGTGGCACCCATGAGGAGTGTGTGGCGCCCGGCCA
GTGCGACTGCTCACCCGGCTACCGGAGAACGCCGGACTTGGGATGCCAAC
CGGTTTGTGCTCCGGACTGCGGATTTGGCAAGTGCGTGGCGCCCAACCAG
TGCGAGTGCTTCGCCGGGTTCATTAAACGGCCCAATTGGAATGTATGCGA
AGCTGAGTGCTACCTGAACTGCGAGAATGGGCTCTGTGAGTCGCGGTACA
AGTGTCACTGCCGCGAAGGATATCGCTACGACGTGAACACCACCAGCTGT
TTGCCGGAGTGCAGCGACAACTGTGGCCAAGGAAATGGGGTGTGCATTGC
GCCCGGAGTGTGCCGCTGCTTCCGAGGATACGAGGTCCACGGTGCCGAGT
GTCGGCCAAAGTGTGAGAGATTCTGCGGCAAATACGGGCGTTGTGTGGCT
CCCGAAATCTGCGGCTGTGGTGAGGGTCAACAGCATTGCCGGAACGGAAG
CTGTGACGATATCGAGCACTGCAGTTGCCCATCGGGGGAAACCCACTTCA
TCGATCGCTGTTTGAAGGCGGACCGCCTCAGTCAGCATCTCAACACTAGC
GAAAAGAGAAAGCACTTCAATCGCCAACTTGCTTATGAGTTTAATGCCCT
GATAGGGCGTCTATTTAATTTCGCAAGCTTTCTAGACCAT

BO05601.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1209 CG33119-PA 1..1206 17..1222 6030 100 Plus
NimB1-RB 1212 CG33119-PB 1..1209 17..1222 5965 99.8 Plus
NimB4-RA 1347 CG33115-PA 728..810 639..721 205 83.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-RA 1286 CG33119-RA 42..1247 17..1222 6030 100 Plus
NimB1-RB 1289 CG33119-RB 42..1250 17..1222 5965 99.8 Plus
NimB4-RA 1478 CG33115-RA 796..878 639..721 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13963899..13964457 208..766 2795 100 Plus
2L 23513712 2L 13964795..13965049 968..1222 1275 100 Plus
2L 23513712 2L 13964535..13964738 766..969 1020 100 Plus
2L 23513712 2L 13963548..13963738 17..207 955 100 Plus
2L 23513712 2L 13968941..13969023 721..639 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-27 19:55:36 has no hits.

BO05601.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:29 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG33119-RA 1..1209 17..1225 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:07 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
nimB1-RA 3..1208 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:55 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 42..1247 17..1224 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:30 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
CG33119-RA 3..1208 17..1222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:56 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
NimB1-RA 42..1247 17..1224 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:56 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13963548..13963738 17..207 100 -> Plus
2L 13963899..13964456 208..765 100 -> Plus
2L 13964535..13964738 766..969 100 -> Plus
2L 13964797..13965049 970..1224 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:55 Download gff for BO05601.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13963548..13963738 17..207 100 -> Plus
arm_2L 13963899..13964456 208..765 100 -> Plus
arm_2L 13964535..13964738 766..969 100 -> Plus
arm_2L 13964797..13965049 970..1224 99   Plus

BO05601.pep Sequence

Translation from 16 to 1240

> BO05601.pep
MHCSGPLAGLTALLTLVAFPVQIKTDSTVSTELYGDIENTEYGDFESLSQ
TRERQQHLCHREVPSVFFQTERDSPVRGNGSTIYFHRIEVCCAGYRRDPY
ANECVPDCSASSPDNCRNGFCRSPGVCECFAEFVRNEHGACIHTCPIACQ
HGRCYLNGTCVCHQNFVLDQETRQFCRPKCSQSCGTHEECVAPGQCDCSP
GYRRTPDLGCQPVCAPDCGFGKCVAPNQCECFAGFIKRPNWNVCEAECYL
NCENGLCESRYKCHCREGYRYDVNTTSCLPECSDNCGQGNGVCIAPGVCR
CFRGYEVHGAECRPKCERFCGKYGRCVAPEICGCGEGQQHCRNGSCDDIE
HCSCPSGETHFIDRCLKADRLSQHLNTSEKRKHFNRQLAYEFNALIGRLF
NFASFLDH

BO05601.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
NimB1-PA 402 CG33119-PA 1..402 1..402 2337 100 Plus
NimB1-PB 403 CG33119-PB 1..403 1..402 2325 99.8 Plus
NimB4-PA 448 CG33115-PA 92..444 59..407 977 47.8 Plus
NimB2-PA 421 CG31839-PA 134..406 58..337 568 40 Plus
NimB5-PC 315 CG16873-PC 92..314 53..280 516 44.2 Plus
NimB2-PA 421 CG31839-PA 167..337 198..357 318 36.9 Plus
NimB2-PA 421 CG31839-PA 270..409 91..237 255 39.6 Plus
NimB2-PA 421 CG31839-PA 167..313 231..365 208 32.7 Plus
NimB2-PA 421 CG31839-PA 302..421 91..213 199 35.4 Plus