Clone Sequence Records
BO05602.3prime Sequence
933 bp (855 high quality bases) assembled on 2005-12-02
> BO05602.3prime
ATGGTCTAGAAAGCTTGCAGCGTAGTAGTTAAGATTAGCCTTCTTCTTCG
CCTGCACTTCCATGATGGCGTCCATGAAGTCTTCGTGCGTAACCGAATTG
GCGGAGCGACGCAGTGCGATCATACCAGCTTCCACACAGACGGCTTTGCA
CTGGGCGCCGTTGAAGTCATCCGTGGATCGGGACAATTCCTCGAAATTCA
CATCATTGCTAACGTTCATTTTACGCGAGTGAATCTGCATAATACGGGCA
CGGGCTTCCTCGTTGGGATGTGGGAACTCGATCTTACGATCCAGACGACC
AGAGCGCAGCAGAGCAGGATCCAGAATGTCTACGCGATTGGTGGCCGCAA
TCACCTTAATATCTGCAGTGGAACTGAAGCCATCGAGCTGATTAAGAAGC
TCCAACATAGTTCGCTGGACCTCACGGTCACCGGCCTTCTCCGAATCGAA
ACGCTTGGTGCCAATGGCGTCCAACTCGTCAATGAAGATAATGGCAGGCG
CCTTCTCCTTGGCCAAGGCGAAGGCATCGCGCACCAGCTTGGCACCATCA
CCGATGAACATTTGCACCAACTGGGGACCTGCCAGCTTGAGGAAGGTGGA
CTTTGTCTGAGCGGCGCAGGCACGGGCCAGCAATGTTTTGCCAGTTCCAG
GGGGGCCGTACAAAAGGACACCTTTGGGTGGGTGAATGCCAAGGTTTTTG
AACTTCTCCTTGTGCGTCATGGGCAGCACCACTGCCTCGATGAGCTCCTG
TATCTGCTTGTCCAAACCTCCAATGTCGGAGTACTGCTCTGTAGGTCGCT
CGTCCACTTCCATGGCTTTTACGCGGGCATCATACTCTGCCGGCAGGGTT
TCCAGGATCAAATAGGAGTCTTTGTTGACTCCGACCAGATCACCTGGCTT
CAGTTTTCTCGGCATCACCAGGGCCGATGACGG
BO05602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10370-PA | 1287 | Tbp-1-RA | 397..1284 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 509..1422 | 933..19 | 4505 | 99.7 | Minus |
Rpt3-RB | 1553 | CG16916-RB | 955..1198 | 515..272 | 290 | 75.1 | Minus |
Rpt3-RA | 1423 | CG16916-RA | 825..1068 | 515..272 | 290 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753764..23754418 | 673..19 | 3275 | 100 | Minus |
3R | 32079331 | 3R | 23753448..23753711 | 933..669 | 1230 | 98.5 | Minus |
X | 23542271 | X | 11126187..11126430 | 515..272 | 290 | 74.6 | Minus |
X | 23542271 | X | 21317184..21317357 | 423..250 | 285 | 77.6 | Minus |
3R | 32079331 | 3R | 30582518..30582688 | 253..423 | 195 | 74.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:26:41 has no hits.
BO05602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:19 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-PA | 371..1287 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:41 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10370-PA | 371..1287 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:37:09 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 509..1422 | 19..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:30 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 509..1422 | 19..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:16:30 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753448..23753708 | 672..933 | 98 | -> | Minus |
3R | 23753766..23754418 | 19..671 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:37:09 Download gff for
BO05602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19579170..19579430 | 672..933 | 98 | -> | Minus |
arm_3R | 19579488..19580140 | 19..671 | 100 | | Minus |
BO05602.5prime Sequence
875 bp (753 high quality bases) assembled on 2005-11-29
> BO05602.5prime
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAANGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATT
BO05602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10370-PA | 1287 | Tbp-1-RA | 1..859 | 17..875 | 4276 | 99.8 | Plus |
CG16916-PA | 1242 | Rpt3-RA | 743..783 | 804..844 | 136 | 92.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 136..997 | 14..875 | 4299 | 99.9 | Plus |
Rpt3-RB | 1553 | CG16916-RB | 955..1025 | 804..874 | 224 | 87.3 | Plus |
Rpt3-RA | 1423 | CG16916-RA | 825..895 | 804..874 | 224 | 87.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753286..23753711 | 225..650 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 23753764..23753993 | 646..875 | 1139 | 99.6 | Plus |
3R | 32079331 | 3R | 23753011..23753225 | 14..228 | 1075 | 100 | Plus |
X | 23542271 | X | 11126187..11126257 | 804..874 | 224 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:26:53 has no hits.
BO05602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:20 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:42 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10370-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:37:12 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 136..997 | 14..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:17:08 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 136..997 | 14..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:17:08 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753011..23753223 | 14..226 | 100 | -> | Plus |
3R | 23753288..23753708 | 227..647 | 100 | -> | Plus |
3R | 23753766..23753993 | 648..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:37:12 Download gff for
BO05602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19578733..19578945 | 14..226 | 100 | -> | Plus |
arm_3R | 19579010..19579430 | 227..647 | 100 | -> | Plus |
arm_3R | 19579488..19579715 | 648..875 | 99 | | Plus |
BO05602.complete Sequence
1318 bp (1318 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630082
> BO05602.complete
GAAGTTATCAGTCGACATGGCTCAGACTCTGGAGGATAAGTCAATCTGGG
AGGACGGGGAGGAGTCCCTGGGCGAGGAGGTGATGCGTATGTCCACCGAT
GAAATTGTGAGCAGGACTCGCCTGATGGACAACGAGATCAAGATCATGAA
GAGCGAAGTGATACGCATAACGCACGAGATTCAGGCGCAAAATGAGAAGA
TCAAGGACAACACCGAAAAGATCAAGGTCAACAAGACACTGCCCTACCTG
GTGTCCAATGTAATAGAGCTGCTGGATGTGGATCCACAGGAGGAGGAGGA
CGACGGCTCCGTCACCGTTCTGGACAACCAGCGAAAGGGCAAGTGCGCCG
TCATCAAAACATCCACTCGACAGGCGTATTTCCTGCCCGTCATCGGCCTG
GTTGATGCCGAGAAACTGAAGCCAGGTGATCTGGTCGGAGTCAACAAAGA
CTCCTATTTGATCCTGGAAACCCTGCCGGCAGAGTATGATGCCCGCGTAA
AAGCCATGGAAGTGGACGAGCGACCTACAGAGCAGTACTCCGACATTGGA
GGTTTGGACAAGCAGATACAGGAGCTCATCGAGGCAGTGGTGCTGCCCAT
GACGCACAAGGAGAAGTTCAAAAACCTTGGCATTCACCCACCCAAAGGTG
TCCTTTTGTACGGCCCCCCTGGAACTGGCAAAACATTGCTGGCCCGTGCC
TGCGCCGCTCAGACAAAGTCCACCTTCCTCAAGCTGGCAGGTCCCCAGTT
GGTGCAAATGTTCATCGGTGATGGTGCCAAGCTGGTGCGCGATGCCTTCG
CCTTGGCCAAGGAGAAGGCGCCTGCCATTATCTTCATTGACGAGTTGGAC
GCCATTGGCACCAAGCGTTTCGATTCGGAGAAGGCCGGTGACCGTGAGGT
CCAGCGAACTATGTTGGAGCTTCTTAATCAGCTCGATGGCTTCAGTTCCA
CTGCAGATATTAAGGTGATTGCGGCCACCAATCGCGTAGACATTCTGGAT
CCTGCTCTGCTGCGCTCTGGTCGTCTGGATCGTAAGATCGAGTTCCCACA
TCCCAACGAGGAAGCCCGTGCCCGTATTATGCAGATTCACTCGCGTAAAA
TGAACGTTAGCAATGATGTGAATTTCGAGGAATTGTCCCGATCCACGGAT
GACTTCAACGGCGCCCAGTGCAAAGCCGTCTGTGTGGAAGCTGGTATGAT
CGCACTGCGTCGCTCCGCCAATTCGGTTACGCACGAAGACTTCATGGACG
CCATCATGGAAGTGCAGGCGAAGAAGAAGGCTAATCTTAACTACTACGCT
GCAAGCTTTCTAGACCAT
BO05602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1287 | CG10370-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
Rpt3-RB | 1242 | CG16916-PB | 743..986 | 804..1047 | 290 | 74.6 | Plus |
Rpt3-RA | 1242 | CG16916-PA | 743..986 | 804..1047 | 290 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-RA | 1627 | CG10370-RA | 136..1422 | 14..1300 | 6435 | 100 | Plus |
Rpt3-RB | 1553 | CG16916-RB | 955..1198 | 804..1047 | 290 | 74.6 | Plus |
Rpt3-RA | 1423 | CG16916-RA | 825..1068 | 804..1047 | 290 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23753764..23754418 | 646..1300 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 23753286..23753711 | 225..650 | 2130 | 100 | Plus |
3R | 32079331 | 3R | 23753011..23753225 | 14..228 | 1075 | 100 | Plus |
X | 23542271 | X | 11126187..11126430 | 804..1047 | 290 | 74.6 | Plus |
X | 23542271 | X | 21317184..21317357 | 896..1069 | 285 | 77.6 | Plus |
3R | 32079331 | 3R | 30582518..30582688 | 1066..896 | 195 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:31 has no hits.
BO05602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:19 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 1..1287 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:54 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 134..1420 | 14..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:33 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 139..1422 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:19 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tbp-1-RA | 134..1420 | 14..1300 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:15 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt5-RA | 139..1422 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:15 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23753014..23753223 | 17..226 | 100 | -> | Plus |
3R | 23753288..23753708 | 227..647 | 100 | -> | Plus |
3R | 23753766..23754418 | 648..1302 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:33 Download gff for
BO05602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19578736..19578945 | 17..226 | 100 | -> | Plus |
arm_3R | 19579010..19579430 | 227..647 | 100 | -> | Plus |
arm_3R | 19579488..19580140 | 648..1302 | 99 | | Plus |
BO05602.pep Sequence
Translation from 16 to 1318
> BO05602.pep
MAQTLEDKSIWEDGEESLGEEVMRMSTDEIVSRTRLMDNEIKIMKSEVIR
ITHEIQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDVDPQEEEDDGSVT
VLDNQRKGKCAVIKTSTRQAYFLPVIGLVDAEKLKPGDLVGVNKDSYLIL
ETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKEK
FKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFI
GDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTML
ELLNQLDGFSSTADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEA
RARIMQIHSRKMNVSNDVNFEELSRSTDDFNGAQCKAVCVEAGMIALRRS
ANSVTHEDFMDAIMEVQAKKKANLNYYAASFLDH
BO05602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt5-PA | 428 | CG10370-PA | 1..428 | 1..428 | 2156 | 100 | Plus |
Rpt2-PB | 439 | CG5289-PB | 72..430 | 43..421 | 909 | 47 | Plus |
Rpt2-PA | 439 | CG5289-PA | 72..430 | 43..421 | 909 | 47 | Plus |
Rpt6-PA | 405 | CG1489-PA | 82..392 | 109..419 | 812 | 51.8 | Plus |
Rpt3-PB | 413 | CG16916-PB | 49..394 | 55..409 | 804 | 44.5 | Plus |