Clone Sequence Records
BO05603.3prime Sequence
910 bp (776 high quality bases) assembled on 2005-12-02
> BO05603.3prime
ATGGTCTAGAAAGCTTGCATTTCTATTATGTTTCTTCTTCGATTTGTGAC
TACTCTTTGACTTGGACTTCTTTTGCTTGGATTTTGTACTCTTTTTGCGT
TTGCTGCGATCGTCCGACGATGAGGAGCTGCTAGAGCTGTCCTCGGAACT
ATCTGAAGATGTGGAGTCGCTTTCGGATTCCGAGGAACTTTCACTCGAAT
CTGAACTGCTGCTAGCTGCTCGTTTCGATTTCTTGGCTTGCTTTTTGCTC
TTTTCCACTGAAAGTTTTCTTTTCTTCTCATGACTCTTGTTAGGGCTTGA
GTGAGTGTCCATTCTATGGTCTTCCCGGTTCCTGGATTGTTGCCTCCGCT
CTGGCGATCTTCTTTGATTCCTGGAGGTTTCTCTATGCGATCTCTCATCG
TTACGTCTTCCTTCTTGAGGGGAATGGAATCGCCTGCTGTCATTGCGATC
TCTGTTTTGAGTCGGTCTTTTTCCAGTTTGATCTCTAGATCTAGAACGCC
TTCTCTCATTTTGTTCCCTTGGCCTAGAGCGTCTTCTTTCCTTTTGGTCC
CTTGACCTAGAACGTCTTCCTAATTGGTCTCTAGGCCTAGAAGGCCTTCT
CTCTTCTCGATCTCTTGACCTAGAGTACCTTCTATGTGTTGCATCCCGAG
ACCTCGATGACCTTTTTTCATTGCGATTCCTTTCGCGATTTGAGTTCTCT
CTGACTGACTCATTTTGCGATTTTTTCGATCTATAAACACTTTTTTCATC
TTTTTCCTTCGATCTGGTGCGTCTTTGCAAATTCTTTCGAACATCTCGTT
CGCTTTGCTCCTGGTGTCGCTGTTCTCTCGCTTTTCTTCGCTCTGCAGAG
CTCATCCTATTTCGAAAATCTTCCGTCCTGTTGCGCTCCTTATGGTCTTC
TTGTCTGGAC
BO05603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-PA | 1962 | CG5808-RA | 1077..1959 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-RA | 2043 | CG5808-RA | 1123..2014 | 910..19 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24815311..24815885 | 336..910 | 2815 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24814932..24815258 | 19..345 | 1635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:20:56 has no hits.
BO05603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:21 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-PA | 1068..1962 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:43 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-PA | 1068..1962 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:05 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 1123..2019 | 14..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:07 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 1123..2019 | 14..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:07 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24814927..24815256 | 14..343 | 99 | <- | Plus |
| 3R | 24815319..24815885 | 344..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:05 Download gff for
BO05603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20640649..20640978 | 14..343 | 99 | <- | Plus |
| arm_3R | 20641041..20641607 | 344..910 | 99 | | Plus |
BO05603.5prime Sequence
857 bp (828 high quality bases) assembled on 2005-12-02
> BO05603.5prime
GAAGTTATCAGTCGACATGTCGGTGGTTATAGAAACCACGATGGGTGACC
TGACCGTCGACCTGTTCATCAGCGAGCGCCCAATTGCCTGCCTAAACTTC
CTCAAGCTGTGCCGGCTGAAGTACTATAACTTCAATCTATTTCACACGGT
GCAGCAGGGATTCATCGCCCAAACAGGCGATCCGAGTGGAGCTGGAGACG
GCGGATCCTCCATCTGGGGCGTGGTGGAGGGTCCGCAAAAGCGCTTCTTC
GAGGCGGAGTTCCTGCCCAAGATTAACCACTCCAGTGCCGGAATGCTATC
GCTGGTCAGTGCAGGCAAGAATCTGGTGGGATCCCAGTTCTTCCTCACGC
TGGGTGAGAACCTAACATCGCTGGACGGCAACCACTGCGTTATCGGTGAA
GTGGTGGAAGGTCACGAGGTGCTGCGCAAGCTAAACGACGCCATTGTTGA
CGACAGCTTCCGTCCTTACCAGGATATACGCATCACACACACTGTTGTGC
TTGAGGATCCGTTTCCTAATCCGCGCGGCCTTCAGGCTCCAAGTCGCTCA
CCTTCGCCCAGTGCGGAGCGTCTGAAGAACGGGCGCATCGCTGCCGACGA
GGATATCGATGACACTGATGGCATGACCGCGGAGGAGATGCAGGAGATGC
TGGCCGAACGAGAGGCCAAGGCTCGAGCCACAATCCTTGAGATTGTCGGC
GATTTACCCGATGCAGACATGGCTCCGCCAGAAAATGTCTTGTTTGTGTG
CAAACTCAATCCTGTTACAACCGACGATGATCTGGAGATAATCTTTAGTA
GCTTCGGCGTGCTTAAAGGATGTGAGGTGATTCGCGACCGCAAAACGGGA
GATTCTC
BO05603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-PA | 1962 | CG5808-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-RA | 2043 | CG5808-RA | 56..896 | 17..857 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24816112..24816952 | 857..17 | 4205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:27:10 has no hits.
BO05603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:22 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:45 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:37:14 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 49..896 | 12..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:10 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 49..896 | 12..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:10 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24816112..24816959 | 12..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:37:14 Download gff for
BO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20641834..20642681 | 12..857 | 99 | | Minus |
BO05603.complete Sequence
1993 bp (1993 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630083
> BO05603.complete
GAAGTTATCAGTCGACATGTCGGTGGTTATAGAAACCACGATGGGTGACC
TGACCGTCGACCTGTTCATCAGCGAGCGCCCAATTGCCTGCCTAAACTTC
CTCAAGCTGTGCCGGCTGAAGTACTATAACTTCAATCTATTTCACACGGT
GCAGCAGGGATTCATCGCCCAAACAGGCGATCCGAGTGGAGCTGGAGACG
GCGGATCCTCCATCTGGGGCGTGGTGGAGGGTCCGCAAAAGCGCTTCTTC
GAGGCGGAGTTCCTGCCCAAGATTAACCACTCCAGTGCCGGAATGCTATC
GCTGGTCAGTGCAGGCAAGAATCTGGTGGGATCCCAGTTCTTCCTCACGC
TGGGTGAGAACCTAACATCGCTGGACGGCAACCACTGCGTTATCGGTGAA
GTGGTGGAAGGTCACGAGGTGCTGCGCAAGCTAAACGACGCCATTGTTGA
CGACAGCTTCCGTCCTTACCAGGATATACGCATCACACACACTGTTGTGC
TTGAGGATCCGTTTCCTAATCCGCGCGGCCTTCAGGCTCCAAGTCGCTCA
CCTTCGCCCAGTGCGGAGCGTCTGAAGAACGGGCGCATCGCTGCCGACGA
GGATATCGATGACACTGATGGCATGACCGCGGAGGAGATGCAGGAGATGC
TGGCCGAACGAGAGGCCAAGGCTCGAGCCACAATCCTTGAGATTGTCGGC
GATTTACCCGATGCAGACATGGCTCCGCCAGAAAATGTCTTGTTTGTGTG
CAAACTCAATCCTGTTACAACCGACGATGATCTGGAGATAATCTTTAGTA
GCTTCGGCGTGCTTAAAGGATGTGAGGTGATTCGCGACCGCAAAACGGGA
GATTCTCTGCAATATGCTTTTGTGGAGTTCGAGGATCAAAAATCTTGTGA
GGCCGCATATTTCAAAATGGATAATGTGCTTATCGACGATCGACGCATCC
ACGTGGACTTCTCCCAATCCGTTTCAAAGGTCACCTGGCGGGGCAAAGGA
CGTGGTATTGAGGGCGACTATAGAAAGCTGGATTTTAACAATTTGCGAGA
CGACAAAGATCACAGGAAACCAAACAATGGCCGGTCCAGAACAGAAGACC
ATAAGGAGCGCAACAGGACGGAAGATTTTCGAAATAGGATGAGCTCTGCA
GAGCGAAGAAAAGCGAGAGAACAGCGACACCAGGAGCAAAGCGAACGAGA
TGTTCGAAAGAATTTGCAAAGACGCACCAGATCGAAGGAAAAAGATGAAA
AAAGTGTTTATAGATCGAAAAAATCGCAAAATGAGTCAGTCAGAGAGAAC
TCAAATCGCGAAAGGAATCGCAATGAAAAAAGGTCATCGAGGTCTCGGGA
TGCAACACATAGAAGGTACTCTAGGTCAAGAGATCGAGAAGAGAGAAGGC
CTTCTAGGCCTAGAGACCAATTAGGAAGACGTTCTAGGTCAAGGGACCAA
AAGGAAAGAAGACGCTCTAGGCCAAGGGAACAAAATGAGAGAAGGCGTTC
TAGATCTAGAGATCAAACTGGAAAAAGACCGACTCAAAACAGAGATCGCA
ATGACAGCAGGCGATTCCATTCCCCTCAAGAAGGAAGACGTAACGATGAG
AGATCGCATAGAGAAACCTCCAGGAATCAAAGAAGATCGCCAGAGCGGAG
GCAACAATCCAGGAACCGGGAAGACCATAGAATGGACACTCACTCAAGCC
CTAACAAGAGTCATGAGAAGAAAAGAAAACTTTCAGTGGAAAAGAGCAAA
AAGCAAGCCAAGAAATCGAAACGAGCAGCTAGCAGCAGTTCAGATTCGAG
TGAAAGTTCCTCGGAATCCGAAAGCGACTCCACATCTTCAGATAGTTCCG
AGGACAGCTCTAGCAGCTCCTCATCGTCGGACGATCGCAGCAAACGCAAA
AAGAGTACAAAATCCAAGCAAAAGAAGTCCAAGTCAAAGAGTAGTCACAA
ATCGAAGAAGAAACATAATAGAAATGCAAGCTTTCTAGACCAT
BO05603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-RA | 1962 | CG5808-PA | 1..1959 | 17..1975 | 9795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-RA | 2043 | CG5808-RA | 56..2014 | 17..1975 | 9795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24815311..24816952 | 1658..17 | 8180 | 99.9 | Minus |
| 3R | 32079331 | 3R | 24814932..24815258 | 1975..1649 | 1635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:02:01 has no hits.
BO05603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:36 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 1..1962 | 17..1979 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:40 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 49..2019 | 12..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:41 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 56..2014 | 17..1977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:36 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 49..2019 | 12..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:41 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5808-RA | 56..2014 | 17..1977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:41 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24814930..24815256 | 1651..1977 | 99 | <- | Minus |
| 3R | 24815319..24816952 | 17..1650 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:41 Download gff for
BO05603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20640652..20640978 | 1651..1977 | 99 | <- | Minus |
| arm_3R | 20641041..20642674 | 17..1650 | 100 | | Minus |
BO05603.pep Sequence
Translation from 16 to 1993
> BO05603.pep
MSVVIETTMGDLTVDLFISERPIACLNFLKLCRLKYYNFNLFHTVQQGFI
AQTGDPSGAGDGGSSIWGVVEGPQKRFFEAEFLPKINHSSAGMLSLVSAG
KNLVGSQFFLTLGENLTSLDGNHCVIGEVVEGHEVLRKLNDAIVDDSFRP
YQDIRITHTVVLEDPFPNPRGLQAPSRSPSPSAERLKNGRIAADEDIDDT
DGMTAEEMQEMLAEREAKARATILEIVGDLPDADMAPPENVLFVCKLNPV
TTDDDLEIIFSSFGVLKGCEVIRDRKTGDSLQYAFVEFEDQKSCEAAYFK
MDNVLIDDRRIHVDFSQSVSKVTWRGKGRGIEGDYRKLDFNNLRDDKDHR
KPNNGRSRTEDHKERNRTEDFRNRMSSAERRKAREQRHQEQSERDVRKNL
QRRTRSKEKDEKSVYRSKKSQNESVRENSNRERNRNEKRSSRSRDATHRR
YSRSRDREERRPSRPRDQLGRRSRSRDQKERRRSRPREQNERRRSRSRDQ
TGKRPTQNRDRNDSRRFHSPQEGRRNDERSHRETSRNQRRSPERRQQSRN
REDHRMDTHSSPNKSHEKKRKLSVEKSKKQAKKSKRAASSSSDSSESSSE
SESDSTSSDSSEDSSSSSSSSDDRSKRKKSTKSKQKKSKSKSSHKSKKKH
NRNASFLDH
BO05603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5808-PA | 653 | CG5808-PA | 1..653 | 1..653 | 3355 | 100 | Plus |
| CG7747-PA | 517 | CG7747-PA | 282..496 | 3..235 | 334 | 34.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 395..712 | 344..652 | 321 | 25.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 448..749 | 347..641 | 310 | 26.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 419..723 | 344..652 | 308 | 24.4 | Plus |
| CG2839-PA | 826 | CG2839-PA | 360..687 | 336..652 | 307 | 23.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 464..772 | 344..649 | 306 | 28.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 440..738 | 344..649 | 304 | 23.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 312..621 | 344..652 | 300 | 24.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 348..670 | 344..652 | 296 | 24.2 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 186..562 | 273..649 | 293 | 27.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 265..568 | 341..649 | 286 | 22.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 336..639 | 344..649 | 285 | 21.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 288..585 | 344..649 | 279 | 22.1 | Plus |
| Cypl-PA | 176 | CG13892-PA | 23..168 | 3..156 | 278 | 39 | Plus |
| CG2839-PA | 826 | CG2839-PA | 489..803 | 332..656 | 275 | 23.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 494..806 | 344..647 | 274 | 24.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..528 | 386..649 | 233 | 22.5 | Plus |
| CG2839-PA | 826 | CG2839-PA | 255..495 | 410..649 | 199 | 18.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 269..463 | 453..652 | 173 | 19.8 | Plus |
