Clone BO05604 Report

Search the DGRC for BO05604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptwun-RA
Protein status:BO05604.pep: validated not full length
Sequenced Size:934

Clone Sequence Records

BO05604.3prime Sequence

864 bp (796 high quality bases) assembled on 2005-12-02

> BO05604.3prime
ATGGTCTAGAAAGCTTGCGTTTGTAGTAATCGTTATGGCCTGGGCCGGCG
ATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGGC
TTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGGA
GCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCCG
ATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTGG
AGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCAG
GTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCAC
TGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCGCGCCGACGATCCAACT
CCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGTC
GCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGGG
GACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCTG
AGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCAT
CCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCAT
TGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGATG
AATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAATT
CCGGACCGTAGAATCGTGGAACGGGTGCTTCAGTGACTCGTCATCGCAGA
AGAAGCCCCGCTTGTACGGCTCGCCCAGCANGAAAAACAGCAGTATGGGA
AATCCAGCGCAGAG

BO05604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8804-PB 1140 wun-RB 292..1137 864..19 4211 99.8 Minus
CG8804-PA 903 wun-RA 55..900 864..19 4211 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 274..1119 864..19 4219 99.9 Minus
wun-RB 2026 CG8804-RB 674..1519 864..19 4219 99.9 Minus
wun-RC 1563 CG8804-RC 674..1408 864..130 3664 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 485..706 1110 100 Plus
2R 25286936 2R 9402656..9402836 307..487 905 100 Plus
2R 25286936 2R 9402408..9402586 129..307 895 100 Plus
2R 25286936 2R 9404307..9404459 706..858 754 99.3 Plus
2R 25286936 2R 9401038..9401149 19..130 560 100 Plus
3L 28110227 3L 22472833..22473048 366..151 210 73.1 Minus
2R 25286936 2R 9417435..9417540 266..161 200 79.2 Minus
Blast to na_te.dros performed on 2015-02-04 19:44:27 has no hits.

BO05604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:23 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-PA 55..903 15..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:46 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8804-PA 55..903 15..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:54 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 674..1522 15..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:55 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 674..1522 15..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:55 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9401035..9401148 15..129 98 <- Plus
2R 9402409..9402585 130..306 100 <- Plus
2R 9402656..9402835 307..486 100 <- Plus
2R 9403707..9403925 487..705 100 <- Plus
2R 9404307..9404464 706..864 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:54 Download gff for BO05604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5288540..5288653 15..129 98 <- Plus
arm_2R 5289914..5290090 130..306 100 <- Plus
arm_2R 5290161..5290340 307..486 100 <- Plus
arm_2R 5291212..5291430 487..705 100 <- Plus
arm_2R 5291812..5291969 706..864 97   Plus

BO05604.5prime Sequence

883 bp (867 high quality bases) assembled on 2005-11-29

> BO05604.5prime
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCA

BO05604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8804-PB 1140 wun-RB 237..1104 16..883 4340 100 Plus
CG8804-PA 903 wun-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 219..1086 16..883 4340 100 Plus
wun-RB 2026 CG8804-RB 619..1486 16..883 4340 100 Plus
wun-RC 1563 CG8804-RC 619..1408 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 450..229 1110 100 Minus
2R 25286936 2R 9402656..9402836 628..448 905 100 Minus
2R 25286936 2R 9402408..9402586 806..628 895 100 Minus
2R 25286936 2R 9404307..9404459 229..77 765 100 Minus
2R 25286936 2R 9401071..9401149 883..805 395 100 Minus
2R 25286936 2R 9409213..9409274 77..16 310 100 Minus
3L 28110227 3L 22472833..22473048 569..784 210 73.1 Plus
2R 25286936 2R 9417435..9417540 669..774 200 79.2 Plus
Blast to na_te.dros performed on 2015-02-12 01:21:31 has no hits.

BO05604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:24 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-PB 231..1103 9..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:47 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8804-PB 231..1103 9..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:39 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1485 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:10 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
wun-RB 613..1485 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:10 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9404307..9404458 78..229 100 <- Minus
2R 9409213..9409280 9..77 95   Minus
2R 9401072..9401148 806..882 100 <- Minus
2R 9402409..9402585 629..805 100 <- Minus
2R 9402656..9402835 449..628 100 <- Minus
2R 9403707..9403925 230..448 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:39 Download gff for BO05604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5288577..5288653 806..882 100 <- Minus
arm_2R 5289914..5290090 629..805 100 <- Minus
arm_2R 5290161..5290340 449..628 100 <- Minus
arm_2R 5291212..5291430 230..448 100 <- Minus
arm_2R 5291812..5291963 78..229 100 <- Minus
arm_2R 5296718..5296785 9..77 95   Minus

BO05604.complete Sequence

934 bp (934 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630084

> BO05604.complete
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCAT
AACGATTACTACAAACGCAAGCTTTCTAGACCAT

BO05604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RB 1140 CG8804-PB 237..1137 16..916 4505 100 Plus
wun-RA 903 CG8804-PA 1..900 17..916 4500 100 Plus
wun-RC 1095 CG8804-PC 237..1026 16..805 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
wun-RA 1626 CG8804-RA 219..1119 16..916 4505 100 Plus
wun-RB 2026 CG8804-RB 619..1519 16..916 4505 100 Plus
wun-RC 1563 CG8804-RC 619..1408 16..805 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9403705..9403926 450..229 1110 100 Minus
2R 25286936 2R 9402656..9402836 628..448 905 100 Minus
2R 25286936 2R 9402408..9402586 806..628 895 100 Minus
2R 25286936 2R 9404307..9404459 229..77 765 100 Minus
2R 25286936 2R 9401038..9401149 916..805 560 100 Minus
2R 25286936 2R 9409213..9409274 77..16 310 100 Minus
3L 28110227 3L 22472833..22473048 569..784 210 73.1 Plus
2R 25286936 2R 9417435..9417540 669..774 200 79.2 Plus
Blast to na_te.dros performed on 2014-11-27 10:18:25 has no hits.

BO05604.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:50 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 231..1140 9..920 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:17 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 197..1106 9..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:27 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 620..1519 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:50 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RA 197..1106 9..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:22 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
wun-RB 620..1519 17..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:22 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9401036..9401148 806..918 98 <- Minus
2R 9402409..9402585 629..805 100 <- Minus
2R 9402656..9402835 449..628 100 <- Minus
2R 9403707..9403925 230..448 100 <- Minus
2R 9404307..9404458 78..229 100 <- Minus
2R 9409213..9409273 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:27 Download gff for BO05604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5288541..5288653 806..918 98 <- Minus
arm_2R 5289914..5290090 629..805 100 <- Minus
arm_2R 5290161..5290340 449..628 100 <- Minus
arm_2R 5291212..5291430 230..448 100 <- Minus
arm_2R 5291812..5291963 78..229 100 <- Minus
arm_2R 5296718..5296778 17..77 100   Minus

BO05604.pep Sequence

Translation from 16 to 934

> BO05604.pep
MDTNKRILCRVGLDVLILLCAGFPILLFFLLGEPYKRGFFCDDESLKHPF
HDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNGNATSRRYVFMN
YELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQM
ADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAM
VYLALYLQARMTWRGSKLLRHLLQFLFIMVAWYTALSRVSDYKHHWSDVL
AGSLIGSISALVVANYVSDLFQKPNTKPYLARTVQDMNASPAQAITITTN
ASFLDH

BO05604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
wun-PA 300 CG8804-PA 1..300 1..300 1573 100 Plus
wun-PB 379 CG8804-PB 80..379 1..300 1573 100 Plus
wun-PC 364 CG8804-PC 80..343 1..264 1385 99.6 Plus
wun2-PA 350 CG8805-PA 85..347 5..265 755 52.9 Plus
wun2-PB 246 CG8805-PB 1..243 25..265 716 54.3 Plus