Clone Sequence Records
BO05604.3prime Sequence
864 bp (796 high quality bases) assembled on 2005-12-02
> BO05604.3prime
ATGGTCTAGAAAGCTTGCGTTTGTAGTAATCGTTATGGCCTGGGCCGGCG
ATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGGC
TTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGGA
GCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCCG
ATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTGG
AGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCAG
GTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCAC
TGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCGCGCCGACGATCCAACT
CCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGTC
GCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGGG
GACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCTG
AGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCAT
CCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCAT
TGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGATG
AATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAATT
CCGGACCGTAGAATCGTGGAACGGGTGCTTCAGTGACTCGTCATCGCAGA
AGAAGCCCCGCTTGTACGGCTCGCCCAGCANGAAAAACAGCAGTATGGGA
AATCCAGCGCAGAG
BO05604.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 292..1137 | 864..19 | 4211 | 99.8 | Minus |
CG8804-PA | 903 | wun-RA | 55..900 | 864..19 | 4211 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 274..1119 | 864..19 | 4219 | 99.9 | Minus |
wun-RB | 2026 | CG8804-RB | 674..1519 | 864..19 | 4219 | 99.9 | Minus |
wun-RC | 1563 | CG8804-RC | 674..1408 | 864..130 | 3664 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 485..706 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 9402656..9402836 | 307..487 | 905 | 100 | Plus |
2R | 25286936 | 2R | 9402408..9402586 | 129..307 | 895 | 100 | Plus |
2R | 25286936 | 2R | 9404307..9404459 | 706..858 | 754 | 99.3 | Plus |
2R | 25286936 | 2R | 9401038..9401149 | 19..130 | 560 | 100 | Plus |
3L | 28110227 | 3L | 22472833..22473048 | 366..151 | 210 | 73.1 | Minus |
2R | 25286936 | 2R | 9417435..9417540 | 266..161 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:44:27 has no hits.
BO05604.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:23 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-PA | 55..903 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:46 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PA | 55..903 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:54 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 674..1522 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:55 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 674..1522 | 15..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:55 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9401035..9401148 | 15..129 | 98 | <- | Plus |
2R | 9402409..9402585 | 130..306 | 100 | <- | Plus |
2R | 9402656..9402835 | 307..486 | 100 | <- | Plus |
2R | 9403707..9403925 | 487..705 | 100 | <- | Plus |
2R | 9404307..9404464 | 706..864 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:54 Download gff for
BO05604.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5288540..5288653 | 15..129 | 98 | <- | Plus |
arm_2R | 5289914..5290090 | 130..306 | 100 | <- | Plus |
arm_2R | 5290161..5290340 | 307..486 | 100 | <- | Plus |
arm_2R | 5291212..5291430 | 487..705 | 100 | <- | Plus |
arm_2R | 5291812..5291969 | 706..864 | 97 | | Plus |
BO05604.5prime Sequence
883 bp (867 high quality bases) assembled on 2005-11-29
> BO05604.5prime
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCA
BO05604.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 237..1104 | 16..883 | 4340 | 100 | Plus |
CG8804-PA | 903 | wun-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 219..1086 | 16..883 | 4340 | 100 | Plus |
wun-RB | 2026 | CG8804-RB | 619..1486 | 16..883 | 4340 | 100 | Plus |
wun-RC | 1563 | CG8804-RC | 619..1408 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 450..229 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 628..448 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9402408..9402586 | 806..628 | 895 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 229..77 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9401071..9401149 | 883..805 | 395 | 100 | Minus |
2R | 25286936 | 2R | 9409213..9409274 | 77..16 | 310 | 100 | Minus |
3L | 28110227 | 3L | 22472833..22473048 | 569..784 | 210 | 73.1 | Plus |
2R | 25286936 | 2R | 9417435..9417540 | 669..774 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:31 has no hits.
BO05604.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:24 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-PB | 231..1103 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:47 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PB | 231..1103 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:39 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1485 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:10 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 613..1485 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:10 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9404307..9404458 | 78..229 | 100 | <- | Minus |
2R | 9409213..9409280 | 9..77 | 95 | | Minus |
2R | 9401072..9401148 | 806..882 | 100 | <- | Minus |
2R | 9402409..9402585 | 629..805 | 100 | <- | Minus |
2R | 9402656..9402835 | 449..628 | 100 | <- | Minus |
2R | 9403707..9403925 | 230..448 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:39 Download gff for
BO05604.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5288577..5288653 | 806..882 | 100 | <- | Minus |
arm_2R | 5289914..5290090 | 629..805 | 100 | <- | Minus |
arm_2R | 5290161..5290340 | 449..628 | 100 | <- | Minus |
arm_2R | 5291212..5291430 | 230..448 | 100 | <- | Minus |
arm_2R | 5291812..5291963 | 78..229 | 100 | <- | Minus |
arm_2R | 5296718..5296785 | 9..77 | 95 | | Minus |
BO05604.complete Sequence
934 bp (934 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630084
> BO05604.complete
GAAGTTATCAGTCGACATGGATACCAACAAAAGAATCCTCTGCCGCGTGG
GCTTGGATGTTTTAATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTT
TTCCTGCTGGGCGAGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTC
ACTGAAGCACCCGTTCCACGATTCTACGGTCCGGAATTGGATGCTATACT
TCATCGGAGCTGTGATACCAGTCGGCGTGATATTCATCGTGGAGGTCATC
ATTTCACAGAACAAGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAG
GTACGTCTTTATGAACTACGAACTGCCCGACTGGATGATCGAGTGCTACA
AGAAGATCGGCATCTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACG
GATATAGCCAAGTACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGT
GTGCCAGCCTCAAATGGCCGACGGCAGCACCTGCGACGATGCGATCAATG
CGGGAAAATACATCCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCG
CGCATGCTCAAAGAGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTT
CACCTTCTTCGCCATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGA
CCTGGCGGGGCTCCAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATC
ATGGTGGCCTGGTACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCA
CTGGTCCGATGTGCTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGG
TCGTGGCCAACTATGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCC
TATTTGGCGCGTACAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCAT
AACGATTACTACAAACGCAAGCTTTCTAGACCAT
BO05604.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RB | 1140 | CG8804-PB | 237..1137 | 16..916 | 4505 | 100 | Plus |
wun-RA | 903 | CG8804-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
wun-RC | 1095 | CG8804-PC | 237..1026 | 16..805 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 219..1119 | 16..916 | 4505 | 100 | Plus |
wun-RB | 2026 | CG8804-RB | 619..1519 | 16..916 | 4505 | 100 | Plus |
wun-RC | 1563 | CG8804-RC | 619..1408 | 16..805 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 450..229 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 628..448 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9402408..9402586 | 806..628 | 895 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 229..77 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9401038..9401149 | 916..805 | 560 | 100 | Minus |
2R | 25286936 | 2R | 9409213..9409274 | 77..16 | 310 | 100 | Minus |
3L | 28110227 | 3L | 22472833..22473048 | 569..784 | 210 | 73.1 | Plus |
2R | 25286936 | 2R | 9417435..9417540 | 669..774 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:18:25 has no hits.
BO05604.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:50 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 231..1140 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:17 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RA | 197..1106 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:27 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 620..1519 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:50 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RA | 197..1106 | 9..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:22 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 620..1519 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:22 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9401036..9401148 | 806..918 | 98 | <- | Minus |
2R | 9402409..9402585 | 629..805 | 100 | <- | Minus |
2R | 9402656..9402835 | 449..628 | 100 | <- | Minus |
2R | 9403707..9403925 | 230..448 | 100 | <- | Minus |
2R | 9404307..9404458 | 78..229 | 100 | <- | Minus |
2R | 9409213..9409273 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:27 Download gff for
BO05604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5288541..5288653 | 806..918 | 98 | <- | Minus |
arm_2R | 5289914..5290090 | 629..805 | 100 | <- | Minus |
arm_2R | 5290161..5290340 | 449..628 | 100 | <- | Minus |
arm_2R | 5291212..5291430 | 230..448 | 100 | <- | Minus |
arm_2R | 5291812..5291963 | 78..229 | 100 | <- | Minus |
arm_2R | 5296718..5296778 | 17..77 | 100 | | Minus |
BO05604.pep Sequence
Translation from 16 to 934
> BO05604.pep
MDTNKRILCRVGLDVLILLCAGFPILLFFLLGEPYKRGFFCDDESLKHPF
HDSTVRNWMLYFIGAVIPVGVIFIVEVIISQNKAKQDNGNATSRRYVFMN
YELPDWMIECYKKIGIYAFGAVLSQLTTDIAKYSIGRLRPHFIAVCQPQM
ADGSTCDDAINAGKYIQEFTCKGVGSSARMLKEMRLSFPSGHSSFTFFAM
VYLALYLQARMTWRGSKLLRHLLQFLFIMVAWYTALSRVSDYKHHWSDVL
AGSLIGSISALVVANYVSDLFQKPNTKPYLARTVQDMNASPAQAITITTN
ASFLDH
BO05604.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-PA | 300 | CG8804-PA | 1..300 | 1..300 | 1573 | 100 | Plus |
wun-PB | 379 | CG8804-PB | 80..379 | 1..300 | 1573 | 100 | Plus |
wun-PC | 364 | CG8804-PC | 80..343 | 1..264 | 1385 | 99.6 | Plus |
wun2-PA | 350 | CG8805-PA | 85..347 | 5..265 | 755 | 52.9 | Plus |
wun2-PB | 246 | CG8805-PB | 1..243 | 25..265 | 716 | 54.3 | Plus |