Clone Sequence Records
BO05606.3prime Sequence
918 bp (866 high quality bases) assembled on 2005-12-02
> BO05606.3prime
ATGGTCTAGAAAGCTTGCCATGCCGCCTTCGTTCTTGGAGCGCACGTCGT
CGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTGC
TTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAATC
ACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACCT
GTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTTC
TCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGAA
GGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCCA
ACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTCC
TTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAGC
CTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCCT
TGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCCG
AATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGAG
CTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGCT
CGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAGC
AACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGGT
GGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGCT
CGTACTCGCGCAGCGCCCTGTAGTCTTCCGCGGAGGTAACATCGAGCTTA
TGCTTGGTCTTTGGCTTCGGGGGCTCAAACGGGCAGGTGAGAATGGCCAG
CTTGACGTTCCTTAGCTC
BO05606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 727..1626 | 918..19 | 4475 | 99.8 | Minus |
CG8439-PB | 1539 | Cct5-RB | 637..1536 | 918..19 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RB | 1754 | CG8439-RB | 652..1551 | 918..19 | 4485 | 99.9 | Minus |
Cct5-RA | 1948 | CG8439-RA | 846..1745 | 918..19 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12176777..12177313 | 555..19 | 2670 | 99.8 | Minus |
2R | 25286936 | 2R | 12176355..12176718 | 918..555 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:43:37 has no hits.
BO05606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:27 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-PA | 727..1629 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:52 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PB | 637..1539 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:26 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 846..1748 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:50 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 846..1748 | 15..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:50 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12176355..12176718 | 555..918 | 100 | -> | Minus |
2R | 12176778..12177316 | 15..554 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:26 Download gff for
BO05606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8063860..8064223 | 555..918 | 100 | -> | Minus |
arm_2R | 8064283..8064821 | 15..554 | 99 | | Minus |
BO05606.5prime Sequence
927 bp (831 high quality bases) assembled on 2005-11-29
> BO05606.5prime
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCCACCTTGCCATCTGCCA
BO05606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8439-PA | 1629 | Cct5-RA | 1..911 | 17..927 | 4505 | 99.7 | Plus |
CG8439-PB | 1539 | Cct5-RB | 18..821 | 124..927 | 3970 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1948 | CG8439-RA | 119..1030 | 16..927 | 4530 | 99.8 | Plus |
Cct5-RB | 1754 | CG8439-RB | 33..836 | 124..927 | 3990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12175735..12176539 | 123..927 | 3995 | 99.8 | Plus |
2R | 25286936 | 2R | 12174920..12175028 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:55:26 has no hits.
BO05606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:28 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:54 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8439-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:12 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..1029 | 16..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:23 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 119..1029 | 16..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:23 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12174920..12175028 | 16..124 | 100 | -> | Plus |
2R | 12175737..12176538 | 125..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:12 Download gff for
BO05606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8062425..8062533 | 16..124 | 100 | -> | Plus |
arm_2R | 8063242..8064043 | 125..926 | 99 | | Plus |
BO05606.complete Sequence
1660 bp (1660 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630085
> BO05606.complete
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGATGAGGCCA
ACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTGGGTTGGCGGT
CCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCATCGTGCCGCG
TTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGACTCGTTCGCG
AAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCATCGAGGAGTGC
AAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTAACGCCATGAT
CATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGCGTGGTGCGTT
CGCTTGTGAAGGACTCGCGAATTGTTTACGGTGGTGGAGCTGCCGAGATT
AGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGTCCACGCTGGA
GCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGCATTCCGCTGG
CTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTTGTCGGAGCTG
AAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTGTCGACTGCAT
GCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTGGAGTCGCTGC
ACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGTCAAGATGATA
CTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCATGGCAAGCTT
TCTAGACCAT
BO05606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1629 | CG8439-PA | 1..1626 | 17..1642 | 8115 | 99.9 | Plus |
Cct5-RB | 1539 | CG8439-PB | 18..1536 | 124..1642 | 7580 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-RA | 1948 | CG8439-RA | 119..1745 | 16..1642 | 8120 | 99.9 | Plus |
Cct5-RB | 1754 | CG8439-RB | 33..1551 | 124..1642 | 7580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12175735..12176718 | 123..1106 | 4920 | 100 | Plus |
2R | 25286936 | 2R | 12176777..12177313 | 1106..1642 | 2670 | 99.8 | Plus |
2R | 25286936 | 2R | 12174920..12175028 | 16..124 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:45 has no hits.
BO05606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:21 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 1..1629 | 17..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:56 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 145..1774 | 16..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:58 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 120..1745 | 17..1644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:21 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 145..1774 | 16..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:37 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cct5-RA | 120..1745 | 17..1644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:37 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12174921..12175028 | 17..124 | 100 | -> | Plus |
2R | 12175737..12176718 | 125..1106 | 100 | -> | Plus |
2R | 12176778..12177313 | 1107..1644 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:58 Download gff for
BO05606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8062426..8062533 | 17..124 | 100 | -> | Plus |
arm_2R | 8063242..8064223 | 125..1106 | 100 | -> | Plus |
arm_2R | 8064283..8064818 | 1107..1644 | 99 | | Plus |
BO05606.pep Sequence
Translation from 16 to 1660
> BO05606.pep
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGMASFLDH
BO05606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cct5-PA | 542 | CG8439-PA | 1..542 | 1..542 | 2717 | 100 | Plus |
Cct5-PB | 512 | CG8439-PB | 7..512 | 37..542 | 2530 | 100 | Plus |
CG5525-PA | 533 | CG5525-PA | 24..528 | 32..534 | 820 | 37.5 | Plus |
CG7033-PA | 535 | CG7033-PA | 7..520 | 16..534 | 707 | 34.4 | Plus |
T-cp1-PA | 557 | CG5374-PA | 14..537 | 28..538 | 674 | 32 | Plus |