Clone BO05606 Report

Search the DGRC for BO05606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCct5-RA
Protein status:BO05606.pep: validated full length
Sequenced Size:1660

Clone Sequence Records

BO05606.3prime Sequence

918 bp (866 high quality bases) assembled on 2005-12-02

> BO05606.3prime
ATGGTCTAGAAAGCTTGCCATGCCGCCTTCGTTCTTGGAGCGCACGTCGT
CGATCTTGAGTATCATCTTGACGAGCTGCGTGGAGAGCAGAATCTGCTGC
TTCTTCGAGTGCAGCGACTCCACCACGTTATGGCTCTTCATGTCCGAATC
ACCCGACAGCATGCAGTCGACACCCAGGCTGGACTTCTTCTCGGCCACCT
GTCTGGCCTTCAGCTCCGACAACGTCTCGATGGGATGCAGGCCGCTGTTC
TCCGCCAGAGCCAGCGGAATGCTCTCCAGGGCCACGGAGAAGGCGCGGAA
GGCGTACTGCTCCAGCGTGGACAGTTGGTCGGCCTCCTTGGCCACAGCCA
ACGAGCAGCTAATCTCGGCAGCTCCACCACCGTAAACAATTCGCGAGTCC
TTCACAAGCGAACGCACCACGCAGATGGCATCGTGAATCGATCGCTTAGC
CTCCGCAATGATCATGGCGTTACCTCCACGCAAGAAGATGGTCACAGCCT
TGGAGTTTTTGCACTCCTCGATGACCAGCATCTTGTCCTTGGATGTTCCG
AATGCCATTTCGCGAACGAGTCCCGCAACACCTAGTTTCTCAGGCGTGAG
CTCTTCGAAACGCGGCACGATGCGTCCACCGGTGGCGATGGCAATCAGCT
CGATCTCCGGACCGCCAACCCAGCGCACGGCGGGCAGCTCCTGCTGAAGC
AACAGGTGGTTGGCCTCATCATCGAAGCCCCACTGGCAGATGGCAAGGGT
GGCGCCGGCGTCCTTCACCTGCTTGACCATCTGGGTGAACTTCTCCTGCT
CGTACTCGCGCAGCGCCCTGTAGTCTTCCGCGGAGGTAACATCGAGCTTA
TGCTTGGTCTTTGGCTTCGGGGGCTCAAACGGGCAGGTGAGAATGGCCAG
CTTGACGTTCCTTAGCTC

BO05606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 727..1626 918..19 4475 99.8 Minus
CG8439-PB 1539 Cct5-RB 637..1536 918..19 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RB 1754 CG8439-RB 652..1551 918..19 4485 99.9 Minus
Cct5-RA 1948 CG8439-RA 846..1745 918..19 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12176777..12177313 555..19 2670 99.8 Minus
2R 25286936 2R 12176355..12176718 918..555 1820 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:43:37 has no hits.

BO05606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:27 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-PA 727..1629 15..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:52 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PB 637..1539 15..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:26 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 846..1748 15..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:50 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 846..1748 15..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:50 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12176355..12176718 555..918 100 -> Minus
2R 12176778..12177316 15..554 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:26 Download gff for BO05606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8063860..8064223 555..918 100 -> Minus
arm_2R 8064283..8064821 15..554 99   Minus

BO05606.5prime Sequence

927 bp (831 high quality bases) assembled on 2005-11-29

> BO05606.5prime
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCCACCTTGCCATCTGCCA

BO05606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8439-PA 1629 Cct5-RA 1..911 17..927 4505 99.7 Plus
CG8439-PB 1539 Cct5-RB 18..821 124..927 3970 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1948 CG8439-RA 119..1030 16..927 4530 99.8 Plus
Cct5-RB 1754 CG8439-RB 33..836 124..927 3990 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176539 123..927 3995 99.8 Plus
2R 25286936 2R 12174920..12175028 16..124 545 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:55:26 has no hits.

BO05606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:28 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:54 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8439-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:12 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..1029 16..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:23 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 119..1029 16..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:23 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12174920..12175028 16..124 100 -> Plus
2R 12175737..12176538 125..926 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:12 Download gff for BO05606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062425..8062533 16..124 100 -> Plus
arm_2R 8063242..8064043 125..926 99   Plus

BO05606.complete Sequence

1660 bp (1660 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630085

> BO05606.complete
GAAGTTATCAGTCGACATGAGCGCCTTTCCCGGTACGTTCGCGTTCGACG
AATATGGTCGGCCTTTCATCATCCTGCGCGACCAGGAGCGCCAGAAGCGC
ATCACAGGAACAGATGCCATAAAGACGCACATTATGGCCGCCCGCCAGAT
CGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGGACAAGATCA
TGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGCGCCACCATC
ATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGATGGTGCAGCT
GTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCGGCGTTGTCG
TGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATCGACAGGGGC
ATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGCCCAGTGCGC
CATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGGACCCGAAGA
ACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGCAGCAAGATC
GTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGATGCTGTGCT
GAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGCTCATCAAGA
TCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTGGTGAAGGGT
GTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAAGGAGCTAAG
GAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCCCGAAGCCAA
AGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTACAGGGCGCTG
CGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCAGGTGAAGGA
CGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATGATGAGGCCA
ACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTGGGTTGGCGGT
CCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCATCGTGCCGCG
TTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGACTCGTTCGCG
AAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCATCGAGGAGTGC
AAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTAACGCCATGAT
CATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGCGTGGTGCGTT
CGCTTGTGAAGGACTCGCGAATTGTTTACGGTGGTGGAGCTGCCGAGATT
AGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGTCCACGCTGGA
GCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGCATTCCGCTGG
CTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTTGTCGGAGCTG
AAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTGTCGACTGCAT
GCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTGGAGTCGCTGC
ACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGTCAAGATGATA
CTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCATGGCAAGCTT
TCTAGACCAT

BO05606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1629 CG8439-PA 1..1626 17..1642 8115 99.9 Plus
Cct5-RB 1539 CG8439-PB 18..1536 124..1642 7580 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RA 1948 CG8439-RA 119..1745 16..1642 8120 99.9 Plus
Cct5-RB 1754 CG8439-RB 33..1551 124..1642 7580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176718 123..1106 4920 100 Plus
2R 25286936 2R 12176777..12177313 1106..1642 2670 99.8 Plus
2R 25286936 2R 12174920..12175028 16..124 545 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:45 has no hits.

BO05606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:21 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 17..1646 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:56 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 145..1774 16..1646 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:58 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 120..1745 17..1644 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:21 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 145..1774 16..1646 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:37 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 120..1745 17..1644 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:37 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12174921..12175028 17..124 100 -> Plus
2R 12175737..12176718 125..1106 100 -> Plus
2R 12176778..12177313 1107..1644 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:58 Download gff for BO05606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062426..8062533 17..124 100 -> Plus
arm_2R 8063242..8064223 125..1106 100 -> Plus
arm_2R 8064283..8064818 1107..1644 99   Plus

BO05606.pep Sequence

Translation from 16 to 1660

> BO05606.pep
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGMASFLDH

BO05606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-PA 542 CG8439-PA 1..542 1..542 2717 100 Plus
Cct5-PB 512 CG8439-PB 7..512 37..542 2530 100 Plus
CG5525-PA 533 CG5525-PA 24..528 32..534 820 37.5 Plus
CG7033-PA 535 CG7033-PA 7..520 16..534 707 34.4 Plus
T-cp1-PA 557 CG5374-PA 14..537 28..538 674 32 Plus