Clone Sequence Records
BO05607.3prime Sequence
530 bp (529 high quality bases) assembled on 2005-12-02
> BO05607.3prime
ATGGTCTAGAAAGCTTGCGGACTGCACCTTGCCCTTGGTGGTGAAGGCGA
AGTATGCGAATCCGCCGACCAAGAAGGCGGCCAAAAGCTCAGCCTTGATC
CAGGGACCCTTGTAGGCACCCTTGGTGGGCACGGAAATGTCGAGCAGCGA
CTTCACCGATGAAACCTTGTCGCCATCCCGCTGGGCCTTGCGCACATTGG
CATAGCCATCCTCGTCGAAGAGACGCACCTGAACATTGCCGCTGCTGCCC
TGCTTGATATCCTCCACCCAGCTCACCTGGTACTTGTTGTCGCCCACCTT
GGCCACCGGCACCACCTTGCCGCAGGGGAACTCGGCGAACAGGCTGGCGG
GAGCGGCTCCGCTGCACTGCAGCGTGAACTCGCCCACATGGGCCAGCTGG
GTCAGAATCGTGGCATCCTGGGTGCTGAAAGAGCTCACGGTGGCCTTGCA
GCTACCGTAGACGCCGGACGCACAAACGGCGGCAATCAGGCAAATGGCGA
ACAGTTGACGGGACATGTCGACTGATAACT
BO05607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9035-PA | 501 | Tapdelta-RA | 1..498 | 516..19 | 2490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tapdelta-RB | 977 | CG9035-RB | 324..821 | 516..19 | 2490 | 100 | Minus |
| Tapdelta-RA | 805 | CG9035-RA | 152..649 | 516..19 | 2490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11370456..11370715 | 19..278 | 1300 | 100 | Plus |
| 2R | 25286936 | 2R | 11370767..11371012 | 271..516 | 1230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:29:35 has no hits.
BO05607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:29 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9035-PA | 1..501 | 15..516 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:55 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9035-PA | 1..501 | 15..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:12 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 147..653 | 14..521 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:36 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 147..653 | 14..521 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:36 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11370452..11370713 | 14..276 | 99 | <- | Plus |
| 2R | 11370773..11371017 | 277..521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:12 Download gff for
BO05607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7257957..7258218 | 14..276 | 99 | <- | Plus |
| arm_2R | 7258278..7258522 | 277..521 | 99 | | Plus |
BO05607.5prime Sequence
530 bp (529 high quality bases) assembled on 2005-11-29
> BO05607.5prime
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCGCAAGCTTTCTAGACC
BO05607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9035-PA | 501 | Tapdelta-RA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tapdelta-RB | 977 | CG9035-RB | 324..821 | 17..514 | 2490 | 100 | Plus |
| Tapdelta-RA | 805 | CG9035-RA | 152..649 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11370456..11370715 | 514..255 | 1300 | 100 | Minus |
| 2R | 25286936 | 2R | 11370767..11371012 | 262..17 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:43:50 has no hits.
BO05607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:29 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9035-PA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:56 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9035-PA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:28 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 147..653 | 12..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:38 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 147..653 | 12..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:38 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11370452..11370713 | 257..519 | 99 | <- | Minus |
| 2R | 11370773..11371017 | 12..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:28 Download gff for
BO05607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7257957..7258218 | 257..519 | 99 | <- | Minus |
| arm_2R | 7258278..7258522 | 12..256 | 99 | | Minus |
BO05607.complete Sequence
532 bp (532 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630086
> BO05607.complete
GAAGTTATCAGTCGACATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCGCAAGCTTTCTAGACCAT
BO05607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tapdelta-RB | 501 | CG9035-PB | 1..498 | 17..514 | 2490 | 100 | Plus |
| Tapdelta-RA | 501 | CG9035-PA | 1..498 | 17..514 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tapdelta-RB | 977 | CG9035-RB | 324..821 | 17..514 | 2490 | 100 | Plus |
| Tapdelta-RA | 805 | CG9035-RA | 152..649 | 17..514 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11370456..11370715 | 514..255 | 1300 | 100 | Minus |
| 2R | 25286936 | 2R | 11370767..11371012 | 262..17 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:30:33 has no hits.
BO05607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:56 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 1..501 | 17..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:00 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 154..660 | 12..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:42 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 152..649 | 17..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:57 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 154..660 | 12..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:48 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tapdelta-RA | 152..649 | 17..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:48 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11370454..11370713 | 257..516 | 99 | <- | Minus |
| 2R | 11370773..11371012 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:42 Download gff for
BO05607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7257959..7258218 | 257..516 | 99 | <- | Minus |
| arm_2R | 7258278..7258517 | 17..256 | 100 | | Minus |
BO05607.pep Sequence
Translation from 16 to 532
> BO05607.pep
MSRQLFAICLIAAVCASGVYGSCKATVSSFSTQDATILTQLAHVGEFTLQ
CSGAAPASLFAEFPCGKVVPVAKVGDNKYQVSWVEDIKQGSSGNVQVRLF
DEDGYANVRKAQRDGDKVSSVKSLLDISVPTKGAYKGPWIKAELLAAFLV
GGFAYFAFTTKGKVQSASFLDH
BO05607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tapdelta-PB | 166 | CG9035-PB | 1..166 | 1..166 | 849 | 100 | Plus |
| Tapdelta-PA | 166 | CG9035-PA | 1..166 | 1..166 | 849 | 100 | Plus |
