Clone Sequence Records
BO05608.3prime Sequence
828 bp (809 high quality bases) assembled on 2005-12-02
> BO05608.3prime
ATGGTCTAGAAAGCTTGCCATGAGTATCAGAGCAATCTCCTCCGGCTGCA
TCGATGGACAGCGCCAATTGTAGAGGTAGTACTGCAGGTTTCCATCCCCG
GCTCCGAATTTTAGCGGTGCAAAGTACTTCTTGTTCTCCATGAGGTCGAG
GGCATTGTACACGTCCATCTGGACATTGCGGGCCGAGATCAGTGCATCGT
TCATCAGGTCCAGCCACGGGGTCTTTGTAGACACATTATAGAACGAATAT
GCGGCACGAACCGTCTTATGCACCGGATGGTGCATCACGGACGATGGCAG
GCAGTAGTAGCTAGTCAGATCAGTGATGTTGCCCTTTTCGTCGGCAACCA
CGAAGCAATCAATAATACCTTCTTTGGGGGTAAACCAATGACGAAACTCC
TCCTTGCTGAACACCGGGCTCAGCTGAAAGCGCTTTAGGTAGTCCTCCAG
CAGCTTGTGGGCCTTGTCCATGTCCTTCGCTGTGATTCGGCGATAGCCCT
TTGTCTTGGGCTGATCGGGTAGCTTGTACAGCTTCATTGTCCGCTGCATG
GTCATGTTACGTGCGAGATGAGAGAAACGCACGTCTACCAGCTTCTTGGG
ATTGAGCGATCGATGCCAATAGCGACAGGTGGCCACTGGCGTGGGCAACA
CAACTCCAGCTGTATAGGCCGCCTGGAAAATCCCCGTCAGATTGACGCGA
CGCGTTATCTCCCGAATCAGGACTGGAGCCACCCGTTTGCTGCGCAACTT
CTTGTGGACGCATAGGAAGTTGATGTCCACAACCTTTAGCACCTTGTCGT
ACGACTTTAGCTTGCTGGGAATGGCTGA
BO05608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 607..1416 | 828..19 | 3925 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 709..1518 | 828..19 | 3975 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176429..8177238 | 19..828 | 3975 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-12 01:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 767..800 | 116 | 82.4 | Plus |
BO05608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:31 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-PA | 608..1419 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:57 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 608..1419 | 18..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:42 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 710..1518 | 19..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:32 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 710..1518 | 19..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:32 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176429..8177237 | 19..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:42 Download gff for
BO05608.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8169529..8170337 | 19..827 | 99 | | Plus |
BO05608.5prime Sequence
923 bp (849 high quality bases) assembled on 2005-11-29
> BO05608.5prime
GAAGTTATCAGTCGACATGCCGAACGAAAACGCAGAGGACCTCTCGGGTC
AAGAGCTAAAGCAGAAGGCCAAGGAGGTGGCCGACGCATCGGAGGCAATG
CTCGAAAAGGTTGTTGCCGGCTTAAATATCCAGGACACGGCATCGACGAA
TGCAGCAGGAAACGAGGATGCGGAGCAGCCTGATGGTGCCAAGAATGAGG
CTTCAGTGTCTGCGAATGCAAGCAAACAGGCCTTGCTACAAGCCGTTTCC
GATGCTATGGCCAGTACCCGTCAGATGGCCAAGAAGTTTGCATTTTGGTC
CACACAGCCAGTCACCAAGCTGGACGAGCAGGTGACCACCAACGAATGCA
TTGAACCGAACAAGGAAATTAGTGAGATTAGAGCATTGCCATACACTCTG
CCAGGCGGCTTCAAATGGGTGACACTAGACCTGAACGACGCCAATGATCT
CAAGGAGCTGTACACGCTGCTCAACGAGAATTATGTGGAGGACGATGATG
CCATGTTCCGTTTCGATTACCAGCCCGAGTTTCTGAAGTGGTCGCTGCAG
CCACCTGGCTGGAAACGCGATTGGCATGTTGGCGTTCGTGTGGAGAAGTC
CGGCAAACTGGTTGGCTTCATCTCAGCCATTCCCAGCAAGCTAAAGTCGT
ACGACAAGGTGCTAAAGGTTGTGGACATCAACTTCCTATGCGTCCACAAG
AAGTTGCGCAGCAAACGGGTGGCTCCAGTCCTGATTCGGGAGATAACGCG
TCGCGTCAATCTGACGGGGATTTTCCAGGCGGCCTATACAGCTGGAGTTG
TGTTGCCCACGCCAGTGGCCACCTGTCGCTATTGGCATCGATCGCTCAAT
CCAAGAAGCTGGTAGACGTGCGTTTCTCTCATCTCGCACGTAACATGACC
ATGCAGCGGACAATGAAGCTGTA
BO05608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7436-PA | 1419 | Nmt-RA | 1..836 | 17..852 | 4030 | 99.2 | Plus |
| CG7436-PA | 1419 | Nmt-RA | 836..908 | 851..923 | 365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 103..1010 | 17..923 | 4425 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176937..8177639 | 923..222 | 3375 | 99 | Minus |
| 3L | 28110227 | 3L | 8178122..8178327 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 15:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 684..651 | 116 | 82.4 | Minus |
BO05608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:32 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:49:58 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7436-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:09 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1009 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:20 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1009 | 17..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:20 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176938..8177639 | 222..922 | 99 | <- | Minus |
| 3L | 8178123..8178327 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:09 Download gff for
BO05608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8171223..8171427 | 17..221 | 100 | | Minus |
| arm_3L | 8170038..8170739 | 222..922 | 99 | <- | Minus |
BO05608.complete Sequence
1450 bp (1450 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630087
> BO05608.complete
GAAGTTATCAGTCGACATGCCGAACGAAAACGCAGAGGACCTCTCGGGTC
AAGAGCTAAAGCAGAAGGCCAAGGAGGTGGCCGACGCATCGGAGGCAATG
CTCGAAAAGGTTGTTGCCGGCTTAAATATCCAGGACACGGCATCGACGAA
TGCAGCAGGAAACGAGGATGCGGAGCAGCCTGATGGTGCCAAGAATGAGG
CTTCAGTGTCTGCGAATGCAAGCAAACAGGCCTTGCTACAAGCCGTTTCC
GATGCTATGGCCAGTACCCGTCAGATGGCCAAGAAGTTTGCATTTTGGTC
CACACAGCCAGTCACCAAGCTGGACGAGCAGGTGACCACCAACGAATGCA
TTGAACCGAACAAGGAAATTAGTGAGATTAGAGCATTGCCATACACTCTG
CCAGGCGGCTTCAAATGGGTGACACTAGACCTGAACGACGCCAATGATCT
CAAGGAGCTGTACACGCTGCTCAACGAGAATTATGTGGAGGACGATGATG
CCATGTTCCGTTTCGATTACCAGCCCGAGTTTCTGAAGTGGTCGCTGCAG
CCACCTGGCTGGAAACGCGATTGGCATGTTGGCGTTCGTGTGGAGAAGTC
CGGCAAACTGGTTGGCTTCATCTCAGCCATTCCCAGCAAGCTAAAGTCGT
ACGACAAGGTGCTAAAGGTTGTGGACATCAACTTCCTATGCGTCCACAAG
AAGTTGCGCAGCAAACGGGTGGCTCCAGTCCTGATTCGGGAGATAACGCG
TCGCGTCAATCTGACGGGGATTTTCCAGGCGGCCTATACAGCTGGAGTTG
TGTTGCCCACGCCAGTGGCCACCTGTCGCTATTGGCATCGATCGCTCAAT
CCCAAGAAGCTGGTAGACGTGCGTTTCTCTCATCTCGCACGTAACATGAC
CATGCAGCGGACAATGAAGCTGTACAAGCTACCCGATCAGCCCAAGACAA
AGGGCTATCGCCGAATCACAGCGAAGGACATGGACAAGGCCCACAAGCTG
CTGGAGGACTACCTAAAGCGCTTTCAGCTGAGCCCGGTGTTCAGCAAGGA
GGAGTTTCGTCATTGGTTTACCCCCAAAGAAGGTATTATTGATTGCTTCG
TGGTTGCCGACGAAAAGGGCAACATCACTGATCTGACTAGCTACTACTGC
CTGCCATCGTCCGTGATGCACCATCCGGTGCATAAGACGGTTCGTGCCGC
ATATTCGTTCTATAATGTGTCTACAAAGACCCCGTGGCTGGACCTGATGA
ACGATGCACTGATCTCGGCCCGCAATGTCCAGATGGACGTGTACAATGCC
CTCGACCTCATGGAGAACAAGAAGTACTTTGCACCGCTAAAATTCGGAGC
CGGGGATGGAAACCTGCAGTACTACCTCTACAATTGGCGCTGTCCATCGA
TGCAGCCGGAGGAGATTGCTCTGATACTCATGGCAAGCTTTCTAGACCAT
BO05608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1419 | CG7436-PA | 1..1416 | 17..1432 | 6930 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-RA | 1812 | CG7436-RA | 103..1518 | 17..1432 | 6930 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8176429..8177639 | 1432..222 | 5905 | 99.2 | Minus |
| 3L | 28110227 | 3L | 8178122..8178327 | 222..17 | 1030 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1542..1575 | 684..651 | 116 | 82.4 | Minus |
BO05608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:22 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 1..1419 | 17..1433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:57 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 84..1499 | 17..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:58 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1518 | 17..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:22 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 84..1499 | 17..1432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:34 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmt-RA | 103..1518 | 17..1434 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:34 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8176427..8177639 | 222..1434 | 99 | <- | Minus |
| 3L | 8178123..8178327 | 17..221 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:58 Download gff for
BO05608.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8169527..8170739 | 222..1434 | 99 | <- | Minus |
| arm_3L | 8171223..8171427 | 17..221 | 100 | | Minus |
BO05608.pep Sequence
Translation from 16 to 1450
> BO05608.pep
MPNENAEDLSGQELKQKAKEVADASEAMLEKVVAGLNIQDTASTNAAGNE
DAEQPDGAKNEASVSANASKQALLQAVSDAMASTRQMAKKFAFWSTQPVT
KLDEQVTTNECIEPNKEISEIRALPYTLPGGFKWVTLDLNDANDLKELYT
LLNENYVEDDDAMFRFDYQPEFLKWSLQPPGWKRDWHVGVRVEKSGKLVG
FISAIPSKLKSYDKVLKVVDINFLCVHKKLRSKRVAPVLIREITRRVNLT
GIFQAAYTAGVVLPTPVATCRYWHRSLNPKKLVDVRFSHLARNMTMQRTM
KLYKLPDQPKTKGYRRITAKDMDKAHKLLEDYLKRFQLSPVFSKEEFRHW
FTPKEGIIDCFVVADEKGNITDLTSYYCLPSSVMHHPVHKTVRAAYSFYN
VSTKTPWLDLMNDALISARNVQMDVYNALDLMENKKYFAPLKFGAGDGNL
QYYLYNWRCPSMQPEEIALILMASFLDH
BO05608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmt-PA | 472 | CG7436-PA | 1..472 | 1..472 | 2477 | 100 | Plus |
