Clone Sequence Records
BO05610.3prime Sequence
875 bp (819 high quality bases) assembled on 2005-12-02
> BO05610.3prime
ATGGTCTAGAAAGCTTGCGACCCAATCCTTGGGGTTCTTCAGGACCTTCA
TCAGTTTGCCCTCCTCGGACTGGGACTTGGGCTCGTGCATGTACTCCCAG
CGGGCGTGCAGGGGCAGGGACATCAGGATGCTCTCGTACCGGGCTCCAGG
CGTGTATAGACCGAACTTGGTGCCACGATCGTAGATCAAATTGAACTCCA
CGTAGCGCCCGCGGCGCAGCAATTGCCACTGTCGTTCGTTGTTGCCATAC
TCCCGATTTTTGTGCTTTCGTACCAGCGGCACGTAGGAGGGAATCACGGC
CCTGGCGCAGCTTGACACAAAGTTGAAGGCCGCCTCCTGGTTGGGCGAAT
CGATGTCGTCGAAAAAGATTCCGCCAATGCCGCGGCTCTCGTTGCGATGC
TTGATGCGGAAGTAGTCGTCGCACCACTTCTTAAAGCGCGGGTAGTAGGT
GGGATCGTGCTCATCGCAGGCGGACTTCAGCGTCTGGTGGAAGTGGGAGG
CGTCCTTCTCGCAGAGGTAATAGGGCGTCAGATCCGTGCCGCCACCAAAC
CACCACTGCTTCTCCCCCTTGGCAGTTTCCACTTCAAAATAACGATAGTT
GAAGTGAATGGTGGGGACATGGGGATTCCTCGGATGGATCACGGCACTCA
CACCGCTGGCAAAGAACGGCAACGAGGCGCCCTCCTTCAGATTCTTGCCG
CGAGCCCGCATCTGTTGTACTGCAGCCGGGGGCAACGAACCGGTGACCAC
GGATATATTGACGCCTGCCTTCTCGAACACATCGCCATCCTGCAGGACGC
AAGTGATGCCGCCTCCGCCCTCAAGCCGCTCCCACCGGTCCACCTTGAAC
TTCTGGCCACAGTTCTCCTCCCGCT
BO05610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3433-PA | 1173 | Coprox-RA | 318..1170 | 871..19 | 4240 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 416..1268 | 871..19 | 4250 | 99.9 | Minus |
| Coprox-RA | 1392 | CG3433-RA | 416..1268 | 871..19 | 4250 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964836..6965688 | 871..19 | 4250 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:30:33 has no hits.
BO05610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:32 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 314..1173 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:00 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 314..1173 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:13 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 412..1274 | 12..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:18 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 412..1274 | 12..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:18 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964832..6965694 | 12..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:13 Download gff for
BO05610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964832..6965694 | 12..875 | 99 | | Minus |
BO05610.5prime Sequence
852 bp (831 high quality bases) assembled on 2005-11-29
> BO05610.5prime
GAAGTTATCAGTCGACATGAACGCACTCCGTCACACGATATCCCTGGTAT
CGCTGGGCACCTTTCAACTGGTGCGCCGGACCAGGGGGCCGCACGCCAGA
GGCTTTCTCCTCGGCACGGGATTGGGCCTGGCCAGCTTTTCGGCGGTCAC
GTACGCACATTCCGCGGAGGCTGTCGACCCAAAGGTCAACGGGGTGCAGA
TGAACACCTCGCGGTTCATGGCCGAGCCCATCACCGACTCCAAGGCACTG
CTGGGGGACAAGGAGAACATGCGTCATCGCATGGAGATCCTGATCATGGA
GATCCAGGCGGAGTTTTGCCGCGCCCTGGAGGCGGAGGAGAACTGTGGCC
AGAAGTTCAAGGTGGACCGGTGGGAGCGGCCTGAGGGCGGAGGCGGCATC
ACTTGCGTCCTGCAGGATGGCGATGTGTTCGAGAAGGCAGGCGTCAATAT
ATCCGTGGTCACCGGTTCGTTGCCCCCGGCTGCAGTACAACAGATGCGGG
CTCGCGGCAAGAATCTGAAGGAGGGCGCCTCGTTGCCGTTCTTTGCCAGC
GGTGTGAGTGCCGTGATCCATCCGAGGAATCCCCATGTCCCCACCATTCA
CTTCAACTATCGTTATTTTGAAGTGGAAACTGCCAAGGGGGAGAAGCAGT
GGTGGTTTGGTGGCGGCACGGATCTGACGCCCTATTACCTCTGCGAGAAG
GACGCCTCCCACTTCCACCAGACGCTGAAGTCCGCCTGCGATGAGCACGA
TCCCACCTACTACCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCA
TCAAGCATCGCAACGAGAGCCGCGGCATTGGCGGATTCTTTTTCGACGAC
AT
BO05610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3433-PA | 1173 | Coprox-RA | 1..836 | 17..852 | 4155 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 99..934 | 17..852 | 4165 | 99.9 | Plus |
| Coprox-RA | 1392 | CG3433-RA | 99..934 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964519..6965354 | 17..852 | 4165 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:44 has no hits.
BO05610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:33 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:01 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3433-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:44 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 95..934 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:50 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 95..934 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:50 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964515..6965354 | 9..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:44 Download gff for
BO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964515..6965354 | 9..852 | 99 | | Plus |
BO05610.complete Sequence
1204 bp (1204 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630088
> BO05610.complete
GAAGTTATCAGTCGACATGAACGCACTCCGTCACACGATATCCCTGGTAT
CGCTGGGCACCTTTCAACTGGTGCGCCGGACCAGGGGGCCGCACGCCAGA
GGCTTTCTCCTCGGCACGGGATTGGGCCTGGCCAGCTTTTCGGCGGTCAC
GTACGCACATTCCGCGGAGGCTGTCGACCCAAAGGTCAACGGGGTGCAGA
TGAACACCTCGCGGTTCATGGCCGAGCCCATCACCGACTCCAAGGCACTG
CTGGGGGACAAGGAGAACATGCGTCATCGCATGGAGATCCTGATCATGGA
GATCCAGGCGGAGTTTTGCCGCGCCCTGGAGGCGGAGGAGAACTGTGGCC
AGAAGTTCAAGGTGGACCGGTGGGAGCGGCCTGAGGGCGGAGGCGGCATC
ACTTGCGTCCTGCAGGATGGCGATGTGTTCGAGAAGGCAGGCGTCAATAT
ATCCGTGGTCACCGGTTCGTTGCCCCCGGCTGCAGTACAACAGATGCGGG
CTCGCGGCAAGAATCTGAAGGAGGGCGCCTCGTTGCCGTTCTTTGCCAGC
GGTGTGAGTGCCGTGATCCATCCGAGGAATCCCCATGTCCCCACCATTCA
CTTCAACTATCGTTATTTTGAAGTGGAAACTGCCAAGGGGGAGAAGCAGT
GGTGGTTTGGTGGCGGCACGGATCTGACGCCCTATTACCTCTGCGAGAAG
GACGCCTCCCACTTCCACCAGACGCTGAAGTCCGCCTGCGATGAGCACGA
TCCCACCTACTACCCGCGCTTTAAGAAGTGGTGCGACGACTACTTCCGCA
TCAAGCATCGCAACGAGAGCCGCGGCATTGGCGGAATCTTTTTCGACGAC
ATCGATTCGCCCAACCAGGAGGCGGCCTTCAACTTTGTGTCAAGCTGCGC
CAGGGCCGTGATTCCCTCCTACGTGCCGCTGGTACGAAAGCACAAAAATC
GGGAGTATGGCAACAACGAACGACAGTGGCAATTGCTGCGCCGCGGGCGC
TACGTGGAGTTCAATTTGATCTACGATCGTGGCACCAAGTTCGGTCTATA
CACGCCTGGAGCCCGGTACGAGAGCATCCTGATGTCCCTGCCCCTGCACG
CCCGCTGGGAGTACATGCACGAGCCCAAGTCCCAGTCCGAGGAGGGCAAA
CTGATGAAGGTCCTGAAGAACCCCAAGGATTGGGTCGCAAGCTTTCTAGA
CCAT
BO05610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1173 | CG3433-PB | 1..1170 | 17..1186 | 5850 | 100 | Plus |
| Coprox-RA | 1173 | CG3433-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-RB | 1467 | CG3433-RB | 99..1268 | 17..1186 | 5850 | 100 | Plus |
| Coprox-RA | 1392 | CG3433-RA | 99..1268 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6964519..6965688 | 17..1186 | 5850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:39:19 has no hits.
BO05610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:23 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 1..1173 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:59 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 90..1269 | 9..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:41 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 99..1268 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:23 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 90..1269 | 9..1193 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:47 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coprox-RA | 99..1268 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:47 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6964519..6965688 | 17..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:41 Download gff for
BO05610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6964519..6965688 | 17..1188 | 99 | | Plus |
BO05610.pep Sequence
Translation from 16 to 1204
> BO05610.pep
MNALRHTISLVSLGTFQLVRRTRGPHARGFLLGTGLGLASFSAVTYAHSA
EAVDPKVNGVQMNTSRFMAEPITDSKALLGDKENMRHRMEILIMEIQAEF
CRALEAEENCGQKFKVDRWERPEGGGGITCVLQDGDVFEKAGVNISVVTG
SLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRY
FEVETAKGEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYP
RFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIP
SYVPLVRKHKNREYGNNERQWQLLRRGRYVEFNLIYDRGTKFGLYTPGAR
YESILMSLPLHARWEYMHEPKSQSEEGKLMKVLKNPKDWVASFLDH
BO05610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coprox-PB | 390 | CG3433-PB | 1..390 | 1..390 | 2099 | 100 | Plus |
| Coprox-PA | 390 | CG3433-PA | 1..390 | 1..390 | 2099 | 100 | Plus |
