Clone Sequence Records
BO05611.5prime Sequence
383 bp (382 high quality bases) assembled on 2005-11-29
> BO05611.5prime
GAAGTTATCAGTCGACATGTCCGCTTCACCCACCGCCCGTCAAGCCATCA
CCCAGGCCCTGCCCATGATCACCAGGAAGGTTGTCATCTCGGATCCGATC
CAGATGCCCGAGGTGTACTCCTCGACGCCCGGCGGAACCCTCTACTCCAC
CACTCCTGGAGGCACCAAACTTATCTACGAGCGGGCTTTCATGAAGAATC
TCCGTGGCTCCCCATTGAGCCAAACTCCGCCGTCCAACGTGCCCAGTTGC
TTGCTGAGGGGAACTCCGCGTACTCCCTTCCGCAAGTGCGTGCCCGTCCC
CACGGAACTGATCAAGCAGACCAAGTCGCTGAAGATTGAGGACCAGGAAC
AGTTCCAACTGGATCTGGCAAGCTTTCTAGACC
BO05611.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8846-PA | 354 | Thor-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..445 | 17..367 | 1755 | 100 | Plus |
| Thor-RA | 755 | CG8846-RA | 183..533 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479390 | 160..367 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 3478616..3478761 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:56:00 has no hits.
BO05611.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:35 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-PA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:04 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8846-PA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:14 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 7..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:28:35 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 7..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:28:35 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478606..3478760 | 7..161 | 97 | -> | Plus |
| 2L | 3479185..3479390 | 162..367 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:14 Download gff for
BO05611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478606..3478760 | 7..161 | 97 | -> | Plus |
| arm_2L | 3479185..3479390 | 162..367 | 100 | | Plus |
BO05611.3prime Sequence
383 bp (382 high quality bases) assembled on 2005-12-02
> BO05611.3prime
ATGGTCTAGAAAGCTTGCCAGATCCAGTTGGAACTGTTCCTGGTCCTCAA
TCTTCAGCGACTTGGTCTGCTTGATCAGTTCCGTGGGGACGGGCACGCAC
TTGCGGAAGGGAGTACGCGGAGTTCCCCTCAGCAAGCAACTGGGCACGTT
GGACGGCGGAGTTTGGCTCAATGGGGAGCCACGGAGATTCTTCATGAAAG
CCCGCTCGTAGATAAGTTTGGTGCCTCCAGGAGTGGTGGAGTAGAGGGTT
CCGCCGGGCGTCGAGGAGTACACCTCGGGCATCTGGATCGGATCCGAGAT
GACAACCTTCCTGGTGATCATGGGCAGGGCCTGGGTGATGGCTTGACGGG
CGGTGGGTGAAGCGGACATGTCGACTGATAACT
BO05611.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8846-PA | 354 | Thor-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..445 | 369..19 | 1755 | 100 | Minus |
| Thor-RA | 755 | CG8846-RA | 183..533 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479390 | 226..19 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 3478616..3478761 | 369..224 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:44:40 has no hits.
BO05611.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:34 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-PA | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:03 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8846-PA | 1..354 | 18..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:57 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 19..379 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:40:58 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 19..379 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:40:58 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478606..3478760 | 225..379 | 97 | -> | Minus |
| 2L | 3479185..3479390 | 19..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:57 Download gff for
BO05611.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478606..3478760 | 225..379 | 97 | -> | Minus |
| arm_2L | 3479185..3479390 | 19..224 | 100 | | Minus |
BO05611.complete Sequence
385 bp (385 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630089
> BO05611.complete
GAAGTTATCAGTCGACATGTCCGCTTCACCCACCGCCCGTCAAGCCATCA
CCCAGGCCCTGCCCATGATCACCAGGAAGGTTGTCATCTCGGATCCGATC
CAGATGCCCGAGGTGTACTCCTCGACGCCCGGCGGAACCCTCTACTCCAC
CACTCCTGGAGGCACCAAACTTATCTACGAGCGGGCTTTCATGAAGAATC
TCCGTGGCTCCCCATTGAGCCAAACTCCGCCGTCCAACGTGCCCAGTTGC
TTGCTGAGGGGAACTCCGCGTACTCCCTTCCGCAAGTGCGTGCCCGTCCC
CACGGAACTGATCAAGCAGACCAAGTCGCTGAAGATTGAGGACCAGGAAC
AGTTCCAACTGGATCTGGCAAGCTTTCTAGACCAT
BO05611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 354 | CG8846-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| Thor-RA | 354 | CG8846-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-RB | 667 | CG8846-RB | 95..445 | 17..367 | 1755 | 100 | Plus |
| Thor-RA | 755 | CG8846-RA | 183..533 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3479183..3479390 | 160..367 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 3478616..3478761 | 17..162 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:21 has no hits.
BO05611.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:32 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 1..354 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:47 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 7..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:06 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 183..533 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:32 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 173..533 | 7..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:29 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Thor-RA | 183..533 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:29 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3478616..3478760 | 17..161 | 100 | -> | Plus |
| 2L | 3479185..3479390 | 162..369 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:06 Download gff for
BO05611.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3478616..3478760 | 17..161 | 100 | -> | Plus |
| arm_2L | 3479185..3479390 | 162..369 | 99 | | Plus |
BO05611.pep Sequence
Translation from 16 to 385
> BO05611.pep
MSASPTARQAITQALPMITRKVVISDPIQMPEVYSSTPGGTLYSTTPGGT
KLIYERAFMKNLRGSPLSQTPPSNVPSCLLRGTPRTPFRKCVPVPTELIK
QTKSLKIEDQEQFQLDLASFLDH
BO05611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Thor-PB | 117 | CG8846-PB | 1..117 | 1..117 | 601 | 100 | Plus |
| Thor-PA | 117 | CG8846-PA | 1..117 | 1..117 | 601 | 100 | Plus |
