Clone Sequence Records
BO05614.3prime Sequence
827 bp (758 high quality bases) assembled on 2005-12-02
> BO05614.3prime
ATGGTCTAGAAAGCTTGCGCCGAGGCTGTCCACGCACACAGTCTTCAGGG
TCTTGCCGGCAATCGTGGTCTTATACTGCTCCGGTAAAGCCAACTCGGTA
TAATCGCCGCTGTCGTCGGGCAACAGGATGTTCATCTCCGAGGACTTGGA
GTTGACGATCTCCACGCCCAGCGAGTCCTTGGACAGATACATCTGGCAGC
CGTCGGTCTTGTCGATCGATACCGTCGGCACCGAGCCGAGCACCTGCATC
TGCACGCTCTGGCAGTTGACGAACTCCACGGAGGCCACCACGGAATCGAA
CAGCAGGGAGCACTTCTTGCAGGAGTCGAAGACGATGTTGTTCACCTTGC
CCTTGACGGTCAGAGTGGATCCCTCACACTTGAACACATACACCACGTTG
TTCATCTCGGCGTTCTCCACCAACAGCCCGGTGTTGTTCTTCTGGTACTC
GATGATCCACTTCTTTCCGTCGCGCTCGAAAACGGGCGCCTTGGCTTGCG
CAGCTGATGGAGCAGCAACGGCCTTGCTGCCGCCCGACTGGGCTGGCGAT
TTGAACGGAGCCGGTCCAGTGCGTAGAGATGGATTTTTATGGGTCTGCAT
GTCGCCAGTGACCTTCTTCAAGCCCTTGGTGATGTCGGCACCCTGGTTGA
TCTGGGCGAAGAGGGCGCTGCGATCATCTCCGGCGCTATCCAGCTTGAGG
GCACTCAGATCCAGCATGGGCGGCGGTGGGGGCAGACCACCGGGTGGCGG
TGGTGGCGGGGCACCTCCGGCGGGGGCCGCTCCCTTGCCGGACCACACCA
AGCCCGTGGTGTGGTACTGCCGGATGT
BO05614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PA | 1275 | capt-RA | 464..1272 | 827..19 | 4045 | 100 | Minus |
CG33979-PB | 2352 | capt-RB | 1541..2349 | 827..19 | 4045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 1257..2065 | 827..19 | 4045 | 100 | Minus |
capt-RA | 2040 | CG33979-RA | 875..1683 | 827..19 | 4045 | 100 | Minus |
capt-RB | 3049 | CG33979-RB | 1884..2692 | 827..19 | 4045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152177..1152701 | 100..624 | 2625 | 100 | Plus |
2L | 23513712 | 2L | 1152770..1152974 | 623..827 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 1152035..1152115 | 19..99 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:44:57 has no hits.
BO05614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:39 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1541..2352 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:12 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1541..2352 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:19:58 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1884..2696 | 14..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:41:26 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1884..2696 | 14..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:41:26 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152031..1152115 | 14..99 | 97 | <- | Plus |
2L | 1152177..1152700 | 100..623 | 100 | <- | Plus |
2L | 1152771..1152974 | 624..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:19:58 Download gff for
BO05614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152031..1152115 | 14..99 | 97 | <- | Plus |
arm_2L | 1152177..1152700 | 100..623 | 100 | <- | Plus |
arm_2L | 1152771..1152974 | 624..827 | 100 | | Plus |
BO05614.5prime Sequence
811 bp (810 high quality bases) assembled on 2005-12-02
> BO05614.5prime
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAA
BO05614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33979-PB | 2352 | capt-RB | 1076..1872 | 15..811 | 3985 | 100 | Plus |
CG33979-PA | 1275 | capt-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 792..1588 | 15..811 | 3985 | 100 | Plus |
capt-RA | 2040 | CG33979-RA | 410..1206 | 15..811 | 3985 | 100 | Plus |
capt-RB | 3049 | CG33979-RB | 1419..2215 | 15..811 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152770..1153319 | 684..135 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 1152573..1152701 | 811..683 | 645 | 100 | Minus |
2L | 23513712 | 2L | 1153386..1153506 | 135..15 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:28:17 has no hits.
BO05614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:40 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1071..1870 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:13 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33979-PB | 1071..1870 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:13 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2213 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:09 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1414..2213 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:09 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152575..1152700 | 684..809 | 100 | <- | Minus |
2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
2L | 1153386..1153511 | 9..135 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:13 Download gff for
BO05614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152575..1152700 | 684..809 | 100 | <- | Minus |
arm_2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
arm_2L | 1153386..1153511 | 9..135 | 98 | | Minus |
BO05614.complete Sequence
1306 bp (1306 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630092
> BO05614.complete
GAAGTTATCAGTCGACATGAGTGTCGCCGGATTCGAGGACATTGTGGCGG
GTCCGCTGAGCCAATACCTAACTCTCTCCGCCAAAATTGGCGGCGATGTG
GCGCAGCATGCGGAGCTCGTGAAGAGCGCCTTTGGCTCCCAACTGCAGTA
CGTGACGCTGGCCACCCAGATCGCCCAGCCGGCGCAGCCCAAGCAGGCGG
AGCTTCTGAAGCCGACCTCGACGCAGATCAGCGCCATCCAGGACTTCCGC
GAGAAGCACCGCTCCTCGCCCTTCTTCAACCACCTGTCGGCCATCAGCGA
AAGCATTCCCGCCTTGGGCTGGGTGTGCGTGGAGAAGACCCCGGGTCCCT
ATGTCAAGGAGATGAACGACGCCGGCCAGTTCTACACGAACCGCGTGCTC
AAGGAGTGGAAGGAGAAGGATGTTACGCATGTGGAGTGGGCCCGCGCCTG
GGTGCAGACGCTCACCGAACTGCAGGCCTACATCCGGCAGTACCACACCA
CGGGCTTGGTGTGGTCCGGCAAGGGAGCGGCCCCCGCCGGAGGTGCCCCG
CCACCACCGCCACCCGGTGGTCTGCCCCCACCGCCGCCCATGCTGGATCT
GAGTGCCCTCAAGCTGGATAGCGCCGGAGATGATCGCAGCGCCCTCTTCG
CCCAGATCAACCAGGGTGCCGACATCACCAAGGGCTTGAAGAAGGTCACT
GGCGACATGCAGACCCATAAAAATCCATCTCTACGCACTGGACCGGCTCC
GTTCAAATCGCCAGCCCAGTCGGGCGGCAGCAAGGCCGTTGCTGCTCCAT
CAGCTGCGCAAGCCAAGGCGCCCGTTTTCGAGCGCGACGGAAAGAAGTGG
ATCATCGAGTACCAGAAGAACAACACCGGGCTGTTGGTGGAGAACGCCGA
GATGAACAACGTGGTGTATGTGTTCAAGTGTGAGGGATCCACTCTGACCG
TCAAGGGCAAGGTGAACAACATCGTCTTCGACTCCTGCAAGAAGTGCTCC
CTGCTGTTCGATTCCGTGGTGGCCTCCGTGGAGTTCGTCAACTGCCAGAG
CGTGCAGATGCAGGTGCTCGGCTCGGTGCCGACGGTATCGATCGACAAGA
CCGACGGCTGCCAGATGTATCTGTCCAAGGACTCGCTGGGCGTGGAGATC
GTCAACTCCAAGTCCTCGGAGATGAACATCCTGTTGCCCGACGACAGCGG
CGATTATACCGAGTTGGCTTTACCGGAGCAGTATAAGACCACGATTGCCG
GCAAGACCCTGAAGACTGTGTGCGTGGACAGCCTCGGCGCAAGCTTTCTA
GACCAT
BO05614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RB | 2352 | CG33979-PB | 1076..2349 | 15..1288 | 6370 | 100 | Plus |
capt-RC | 1275 | CG33979-PC | 1..1272 | 17..1288 | 6360 | 100 | Plus |
capt-RA | 1275 | CG33979-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-RC | 2422 | CG33979-RC | 792..2065 | 15..1288 | 6370 | 100 | Plus |
capt-RA | 2040 | CG33979-RA | 410..1683 | 15..1288 | 6370 | 100 | Plus |
capt-RB | 3049 | CG33979-RB | 1419..2692 | 15..1288 | 6370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1152770..1153319 | 684..135 | 2750 | 100 | Minus |
2L | 23513712 | 2L | 1152177..1152701 | 1207..683 | 2625 | 100 | Minus |
2L | 23513712 | 2L | 1153386..1153506 | 135..15 | 605 | 100 | Minus |
2L | 23513712 | 2L | 1152035..1152115 | 1288..1208 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:06:29 has no hits.
BO05614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:24 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1071..2352 | 9..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:57:00 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1409..2691 | 9..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:59 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1421..2692 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:25 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1409..2691 | 9..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:51:26 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capt-RB | 1421..2692 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:51:26 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1152033..1152115 | 1208..1290 | 97 | <- | Minus |
2L | 1152177..1152700 | 684..1207 | 100 | <- | Minus |
2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
2L | 1153386..1153504 | 17..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:59 Download gff for
BO05614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1152033..1152115 | 1208..1290 | 97 | <- | Minus |
arm_2L | 1152177..1152700 | 684..1207 | 100 | <- | Minus |
arm_2L | 1152771..1153318 | 136..683 | 100 | <- | Minus |
arm_2L | 1153386..1153504 | 17..135 | 100 | | Minus |
BO05614.pep Sequence
Translation from 16 to 1306
> BO05614.pep
MSVAGFEDIVAGPLSQYLTLSAKIGGDVAQHAELVKSAFGSQLQYVTLAT
QIAQPAQPKQAELLKPTSTQISAIQDFREKHRSSPFFNHLSAISESIPAL
GWVCVEKTPGPYVKEMNDAGQFYTNRVLKEWKEKDVTHVEWARAWVQTLT
ELQAYIRQYHTTGLVWSGKGAAPAGGAPPPPPPGGLPPPPPMLDLSALKL
DSAGDDRSALFAQINQGADITKGLKKVTGDMQTHKNPSLRTGPAPFKSPA
QSGGSKAVAAPSAAQAKAPVFERDGKKWIIEYQKNNTGLLVENAEMNNVV
YVFKCEGSTLTVKGKVNNIVFDSCKKCSLLFDSVVASVEFVNCQSVQMQV
LGSVPTVSIDKTDGCQMYLSKDSLGVEIVNSKSSEMNILLPDDSGDYTEL
ALPEQYKTTIAGKTLKTVCVDSLGASFLDH
BO05614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
capt-PC | 424 | CG33979-PC | 1..424 | 1..424 | 2200 | 100 | Plus |
capt-PA | 424 | CG33979-PA | 1..424 | 1..424 | 2200 | 100 | Plus |
capt-PB | 783 | CG33979-PB | 360..783 | 1..424 | 2200 | 100 | Plus |