Clone Sequence Records
BO05616.3prime Sequence
875 bp (866 high quality bases) assembled on 2005-12-02
> BO05616.3prime
ATGGTCTAGAAAGCTTGCGTTCTGTGGCTGATCCTCCGGCGCTGGCAGCT
TCTCCCAGGTGGGCTCCACTCCCCAAATCTCGCGGGCGTACTCGGCGATG
GTGCGATCCGACGAGAATTTGCCGCTGGACGCAATGTTGTTGATGGACAT
CTCCAGCCACTTGGCTTGGTTCTGGTAGGTCTTGGAGACCAGATCCTGGG
CCTTGATGTACGCATCGTAGTCGGCCAGCAAGTAGTAGTGGTCGTACTTA
AGCAGAATGTCGGCAATGTTCTTGAACTCGTTGGGATTGCCGGGGCTGAA
GAATCCGCCCTGGATTTGGTCAATCACCTGCTTGACCTCGGGGTTGGCGT
TGTAGTAGTCGTAGGCATTGTAGCCCTTCTTCTTGAGCGCCTCCACCTCG
TCGACGGTCATGCCGAAGATAAAGATGTTGTCCAGACCCATCTCCTCGGC
CATCTCAACGTTGGCACCGTCCAGGGTGCCGATGGTGAGGGCGCCGTTAA
GCTGGAACTTCATGTTGCCGGTACCAGAGGCCTCTGTGCCGGCGGTCGAG
ATCTGCTCGGACAGATCGGCGGCGGGCATAATCTTCTCGGCCAGGGTGAC
ACGGTAGTTCTCCAGGAAGATAACCTTGAGCTTATCGCCCACAATGGGAT
CGTTGTTCACAACGTTGCCCACGGCGCAGATGAGCTTGATGATCTGCTTG
GCCACATAGTAGCCCGGAGCAGCCTTGCCTCCGATCATGATTGTCCTCGG
GGTGAAGTTGGCTGTGGGATCCTTCTTGATCCTGTTGTACAGGGTGATGA
TGTGCAGGCAGTTCAGCAGCTGGCGCTTGTACTCGTGAATACGTTTCACC
TGAATGTCGAACATGGAAGAGGGGG
BO05616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7254-PA | 2535 | GlyP-RA | 1677..2532 | 874..19 | 4280 | 100 | Minus |
| CG7254-PB | 2535 | GlyP-RB | 1677..2532 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 1876..2731 | 874..19 | 4280 | 100 | Minus |
| GlyP-RA | 3144 | CG7254-RA | 1876..2731 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2135942..2136644 | 874..172 | 3515 | 100 | Minus |
| 2L | 23513712 | 2L | 2136728..2136883 | 174..19 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:45:11 has no hits.
BO05616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:44 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1676..2535 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:17 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1676..2535 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:01 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 1875..2734 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:41:27 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 1875..2734 | 15..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:41:27 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2135941..2136644 | 172..875 | 99 | -> | Minus |
| 2L | 2136731..2136886 | 15..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:01 Download gff for
BO05616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2135941..2136644 | 172..875 | 99 | -> | Minus |
| arm_2L | 2136731..2136886 | 15..171 | 98 | | Minus |
BO05616.5prime Sequence
921 bp (855 high quality bases) assembled on 2005-12-02
> BO05616.5prime
GAAGTTATCAGTCGACATGTCGAAGCCCCAATCCGACGCCGATCGGCGCA
AACAGATCTCGGTGCGCGGGATCGCCGAGGTGGGCAATGTCACCGAAGTG
AAGAAGAACTTCAATCGCCACCTGCACTACACCCTGGTCAAGGATCGCAA
TGTGTCCACCCTGAGGGACTACTACTTCGCCCTGGCCAACACCGTCAAGG
ACAACATGGTGGGCCGCTGGATTCGCACGCAGCAGCACTACTACGAGAAG
GATCCCAAGCGCGTCTACTATCTGTCGCTGGAGTACTACATGGGTCGCTC
ACTGACCAACACCATGATCAACCTGGGAATCCAGAGCGAGTGCGAGGAGG
CCATGTACCAGTTGGGTCTGGATATCGAGAACCTGGAGGAGATGGAGGAG
GACGCCGGTCTGGGCAATGGTGGTCTGGGTCGTTTGGCCGCCTGTTTCCT
CGACTCGATGGCCACTCTGGGTCTGGCCGCCTATGGCTATGGCATCCGTT
ATGAGTACGGTATCTTCGCCCAGAAGATCAAGAACGGCGAGCAGGTGGAG
GAGCCCGATGATTGGCTGCGTTATGGCAATCCCTGGGAGAAGGCTCGTCC
GGAGTTCATGCTGCCGGTCAACTTCTACGGCCGTGTGATCGACACGCCCG
AGGGCAAGAAGTGGGTGGACACCCAAAGGGTGTTTGCCATGCCCTACGAC
AACCCCATTCCCGGATACAACAACAACCACGTAAACACGCTGCGTCTGTG
GTCCGCCAAGTCGCCCATCGACTTCAACCTCAAGTTCTTCAACGATGGTG
ACTACATCCAGGCCGTGCTGGACCGCAATCTGGCTGAGAACATCTCACGT
GTCCTGTACCCCCAACGACACTTCTTCGAGGGGCAGGAGCTGCGTCTGAA
GCAGGAATACTTCATGTGCGC
BO05616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7254-PA | 2535 | GlyP-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
| CG7254-PB | 2535 | GlyP-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
| CG7254-PA | 2535 | GlyP-RA | 854..905 | 870..921 | 210 | 96.1 | Plus |
| CG7254-PB | 2535 | GlyP-RB | 854..905 | 870..921 | 210 | 96.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 199..1104 | 16..921 | 4455 | 99.6 | Plus |
| GlyP-RA | 3144 | CG7254-RA | 199..1104 | 16..921 | 4455 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2134437..2134967 | 258..788 | 2655 | 100 | Plus |
| 2L | 23513712 | 2L | 2131011..2131254 | 16..259 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 2135038..2135170 | 789..921 | 545 | 94 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:51 has no hits.
BO05616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:44 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:18 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7254-PB | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:46 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 199..1104 | 16..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:11 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 199..1104 | 16..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:11 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2131011..2131254 | 16..259 | 100 | -> | Plus |
| 2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| 2L | 2135038..2135170 | 789..921 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:46 Download gff for
BO05616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2131011..2131254 | 16..259 | 100 | -> | Plus |
| arm_2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| arm_2L | 2135038..2135170 | 789..921 | 97 | | Plus |
BO05616.complete Sequence
2566 bp assembled on 2008-08-14
GenBank Submission: FJ630094
> BO05616.complete
GAAGTTATCAGTCGACATGTCGAAGCCCCAATCCGACGCCGATCGGCGCA
AACAGATCTCGGTGCGCGGGATCGCCGAGGTGGGCAATGTCACCGAAGTG
AAGAAGAACTTCAATCGCCACCTGCACTACACCCTGGTCAAGGATCGCAA
TGTGTCCACCCTGAGGGACTACTACTTCGCCCTGGCCAACACCGTCAAGG
ACAACATGGTGGGCCGCTGGATTCGCACGCAGCAGCACTACTACGAGAAG
GATCCCAAGCGCGTCTACTATCTGTCGCTGGAGTACTACATGGGTCGCTC
ACTGACCAACACCATGATCAACCTGGGAATCCAGAGCGAGTGCGAGGAGG
CCATGTACCAGTTGGGTCTGGATATCGAGAACCTGGAGGAGATGGAGGAG
GACGCCGGTCTGGGCAATGGTGGTCTGGGTCGTTTGGCCGCCTGTTTCCT
CGACTCGATGGCCACTCTGGGTCTGGCCGCCTATGGCTATGGCATCCGTT
ATGAGTACGGTATCTTCGCCCAGAAGATCAAGAACGGCGAGCAGGTGGAG
GAGCCCGATGATTGGCTGCGTTATGGCAATCCCTGGGAGAAGGCTCGTCC
GGAGTTCATGCTGCCGGTCAACTTCTACGGCCGTGTGATCGACACGCCCG
AGGGCAAGAAGTGGGTGGACACCCAAAGGGTGTTTGCCATGCCCTACGAC
AACCCCATTCCCGGATACAACAACAACCACGTAAACACGCTGCGTCTGTG
GTCCGCCAAGTCGCCCATCGACTTCAACCTCAAGTTCTTCAACGATGGTG
ACTACATCCAGGCCGTGCTGGACCGCAATCTGGCTGAGAACATCTCACGT
GTCCTGTACCCCAACGACAACTTCTTCGAGGGCAAGGAGCTGCGTCTGAA
GCAGGAATACTTCATGTGCGCCGCCACGCTGCAGGATATCATCCGCCGCT
ACAAGGCCTCGAAGTTCGGATCCCGGGAGGCGGTCCGCAACACCTTCGAT
CACTTCCCCGACAAGGTGGCCATTCAGCTGAACGATACCCATCCATCGCT
GGCCATCCCTGAGCTGATGCGCATCCTGGTCGATGAGGAGCATCTGACCT
GGGAGAAGGCATGGGACATCACCGTCAGGAGTTGCGCGTACACCAACCAC
ACCGTGCTCCCAGAGGCCCTGGAGCGCTGGCCCGTCTCCCTGCTGGAGTC
GATCCTGCCCCGCCATCTGCAAATCATCTATCACATCAACTTCCTGCACA
TGGAGAATGTGAAGAAGAAGTTCCCCGACGATTTGGACCGCATGCGCCGC
ATGTCGATGGTGGAGGAGGATGGCGAGAAGCGCATCAACATGGCTCATCT
GTCCATCGTCGGCTCCCACGCCGTCAACGGTGTGGCCGCCATCCACTCGC
AGATCCTAAAGGACTCGCTGTTCCATGACTTCTACGAAATGGAGCCCCAG
AAGTTCCAGAACAAGACGAACGGTATTACCCCGCGTCGTTGGTTGCTGCT
CTGCAATCCCGGACTCTCCGACCTGATCGCCGAGAAGATCGGCGACGAGT
GGCCAGTGCATCTGGACCAACTGGTTGCTCTGAAGAAGTGGGCAAAGGAC
CCCAACTTCCAGCGCAATGTAGCCCGCGTCAAGCAGGAGAACAAGCTGAA
GCTGGCCGCCATTCTGGAGAAGGACTACGGCGTTAAGATCAACCCCTCTT
CCATGTTCGACATTCAGGTGAAACGTATTCACGAGTACAAGCGCCAGCTG
CTGAACTGCCTGCACATCATCACCCTGTACAACAGGATCAAGAAGGATCC
CACAGCCAACTTCACCCCGAGGACAATCATGATCGGAGGCAAGGCTGCTC
CGGGCTACTATGTGGCCAAGCAGATCATCAAGCTCATCTGCGCCGTGGGC
AACGTTGTGAACAACGATCCCATTGTGGGCGATAAGCTCAAGGTTATCTT
CCTGGAGAACTACCGTGTCACCCTGGCCGAGAAGATTATGCCCGCCGCCG
ATCTGTCCGAGCAGATCTCGACCGCCGGCACAGAGGCCTCTGGTACCGGC
AACATGAAGTTCCAGCTTAACGGCGCCCTCACCATCGGCACCCTGGACGG
TGCCAACGTTGAGATGGCCGAGGAGATGGGTCTGGACAACATCTTTATCT
TCGGCATGACCGTCGACGAGGTGGAGGCGCTCAAGAAGAAGGGCTACAAT
GCCTACGACTACTACAACGCCAACCCCGAGGTCAAGCAGGTGATTGACCA
AATCCAGGGCGGATTCTTCAGCCCCGGCAATCCCAACGAGTTCAAGAACA
TTGCCGACATTCTGCTTAAGTACGACCACTACTACTTGCTGGCCGACTAC
GATGCGTACATCAAGGCCCAGGATCTGGTCTCCAAGACCTACCAGAACCA
AGCCAAGTGGCTGGAGATGTCCATCAACAACATTGCGTCCAGCGGCAAAT
TCTCGTCGGATCGCACCATCGCCGAGTACGCCCGCGAGATTTGGGGAGTG
GAGCCCACCTGGGAGAAGCTGCCAGCGCCGGAGGATCAGCCACAGAACGC
AAGCTTTCTAGACCAT
BO05616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2535 | CG7254-PB | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| GlyP-RA | 2535 | CG7254-PA | 1..2532 | 17..2548 | 12660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-RB | 2891 | CG7254-RB | 199..2731 | 16..2548 | 12665 | 100 | Plus |
| GlyP-RA | 3144 | CG7254-RA | 199..2731 | 16..2548 | 12665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2135038..2136644 | 789..2395 | 8035 | 100 | Plus |
| 2L | 23513712 | 2L | 2134437..2134967 | 258..788 | 2655 | 100 | Plus |
| 2L | 23513712 | 2L | 2131011..2131254 | 16..259 | 1220 | 100 | Plus |
| 2L | 23513712 | 2L | 2136728..2136883 | 2393..2548 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:27:14 has no hits.
BO05616.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:49 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RB | 197..2732 | 16..2552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:14 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 200..2731 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:38 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RB | 198..2729 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:43 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GlyP-RA | 200..2731 | 17..2550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:43 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2131012..2131254 | 17..259 | 100 | -> | Plus |
| 2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| 2L | 2135038..2136644 | 789..2395 | 100 | -> | Plus |
| 2L | 2136731..2136883 | 2396..2550 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:14 Download gff for
BO05616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2131012..2131254 | 17..259 | 100 | -> | Plus |
| arm_2L | 2134439..2134967 | 260..788 | 100 | -> | Plus |
| arm_2L | 2135038..2136644 | 789..2395 | 100 | -> | Plus |
| arm_2L | 2136731..2136883 | 2396..2550 | 98 | | Plus |
BO05616.pep Sequence
Translation from 16 to 2566
> BO05616.pep
MSKPQSDADRRKQISVRGIAEVGNVTEVKKNFNRHLHYTLVKDRNVSTLR
DYYFALANTVKDNMVGRWIRTQQHYYEKDPKRVYYLSLEYYMGRSLTNTM
INLGIQSECEEAMYQLGLDIENLEEMEEDAGLGNGGLGRLAACFLDSMAT
LGLAAYGYGIRYEYGIFAQKIKNGEQVEEPDDWLRYGNPWEKARPEFMLP
VNFYGRVIDTPEGKKWVDTQRVFAMPYDNPIPGYNNNHVNTLRLWSAKSP
IDFNLKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFM
CAATLQDIIRRYKASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPEL
MRILVDEEHLTWEKAWDITVRSCAYTNHTVLPEALERWPVSLLESILPRH
LQIIYHINFLHMENVKKKFPDDLDRMRRMSMVEEDGEKRINMAHLSIVGS
HAVNGVAAIHSQILKDSLFHDFYEMEPQKFQNKTNGITPRRWLLLCNPGL
SDLIAEKIGDEWPVHLDQLVALKKWAKDPNFQRNVARVKQENKLKLAAIL
EKDYGVKINPSSMFDIQVKRIHEYKRQLLNCLHIITLYNRIKKDPTANFT
PRTIMIGGKAAPGYYVAKQIIKLICAVGNVVNNDPIVGDKLKVIFLENYR
VTLAEKIMPAADLSEQISTAGTEASGTGNMKFQLNGALTIGTLDGANVEM
AEEMGLDNIFIFGMTVDEVEALKKKGYNAYDYYNANPEVKQVIDQIQGGF
FSPGNPNEFKNIADILLKYDHYYLLADYDAYIKAQDLVSKTYQNQAKWLE
MSINNIASSGKFSSDRTIAEYAREIWGVEPTWEKLPAPEDQPQNASFLDH
BO05616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GlyP-PB | 844 | CG7254-PB | 1..844 | 1..844 | 4461 | 100 | Plus |
| GlyP-PA | 844 | CG7254-PA | 1..844 | 1..844 | 4461 | 100 | Plus |
