Clone Sequence Records
BO05621.3prime Sequence
937 bp (783 high quality bases) assembled on 2005-12-02
> BO05621.3prime
ATGGTCTAGAAAGCTTGCTAAGCTACCAATATCATTGTAACGCTTCAACT
TGTCCGGGAAATTGTCCCGGAATAACACAGGGTCCGCTCTGAACTCCACC
GTGCGAAGTGGCATGCGGCCGTAGATTTTGGAGAAGCGATCAATGCAAGC
CGAACGTTCACGCATGTGATTCAGATCAGCGGAGAGCATTTCCGTATTGG
TGCACTCCGGGCACTTAAACTTCTTTCGAGGAGTAACCTTAATGGGCGGA
TTGTTGGTGATGTTGGCCACCAGAAAATTCATGGCAATGTCCTCGCAATT
CATGTGCTCATCCACCCAATCCTTGATATCACCCGGCATGGCATGTGTGT
ACATGTGACTCCAGTACTTGTGATGGAAAGCAGCGCCGGTAAGAACCATT
GATATTTGGTTCGTCCACTCCGATTCGTAGTGCCAGCGCATCGTAACATT
TTCCCAAACATGAATTCGACTGGGAAAGCCAACAATGTGATCAGGAAACT
CTCGCCAAACTTCATAGCCAAAATCCAACTCATCAGTGGTCAGCATTATG
ATGTCATCGTCTATGGTTAAGATAGCTTCCGTTTCTATTTCTGGATATGG
ATAGAATCGATTGGATAGCTTGTTCTCCTTGGTTTGCCGAATTTTCAGCG
GTTTCGATATAGATGGAAAGGTGGATAAGTGCGGTGGAGATTTTTTCTGA
TTATTCCAAATCACTAAAATGCTTTGCAATGATGGCACTACAGCGAGCTT
CTGAATCAGCAGGAACAGACTCTCCACGCGATCGTAAGTGAGGATGACGG
CGGTGAAGCCCTGTGACTTTGGTGCCAGCGACGGCAGGAAAAGGGGATTG
AATGTGGAACGGGCGTTGGTATCAATGGTATTTCACTGACGACTGCTACG
GGCTCGCAGCGGAAAGATCCTACTCTCCAGCACCCTC
BO05621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8433-PA | 2154 | Ext2-RA | 1236..2151 | 934..19 | 4530 | 99.7 | Minus |
| CG8433-PB | 2154 | Ext2-RB | 1236..2151 | 934..19 | 4530 | 99.7 | Minus |
| CG15110-PA | 2919 | botv-RA | 2631..2675 | 316..272 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ext2-RB | 2694 | CG8433-RB | 1298..2213 | 934..19 | 4550 | 99.8 | Minus |
| botv-RA | 3608 | CG15110-RA | 2732..2776 | 316..272 | 180 | 93.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16146385..16146884 | 19..518 | 2500 | 100 | Plus |
| 2R | 25286936 | 2R | 16147166..16147422 | 678..934 | 1255 | 99.2 | Plus |
| 2R | 25286936 | 2R | 16146942..16147101 | 518..677 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:27:51 has no hits.
BO05621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:51 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8433-PB | 1234..2154 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:28 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8433-PB | 1234..2154 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:37:18 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RA | 2091..3012 | 14..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:55 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RB | 1296..2217 | 14..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:55 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16146381..16146883 | 14..517 | 99 | <- | Plus |
| 2R | 16146942..16147101 | 518..677 | 100 | <- | Plus |
| 2R | 16147166..16147424 | 678..937 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:37:18 Download gff for
BO05621.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12033886..12034388 | 14..517 | 99 | <- | Plus |
| arm_2R | 12034447..12034606 | 518..677 | 100 | <- | Plus |
| arm_2R | 12034671..12034929 | 678..937 | 98 | | Plus |
BO05621.5prime Sequence
933 bp (797 high quality bases) assembled on 2005-12-02
> BO05621.5prime
GAAGTTATCAGTCGACATGACAAAAATAAAGAATCTGCTGAGTTTTGTGA
CCCAGTCACGGGCCATATCGCACACCAATCCCAGGGAACATATACTTAAC
TGCCTGACCTATGGGCTACTAGTCATTGTGGCGCTCTGCGCGGGTTTTCT
GCTTTGGGATCTCTCCAGCAGCCCACGGGATGGATTCTTCCATGGGAAAA
GGGACTCGCACACATTAATCCTCGACCTGGAGCACATCCAGGAGCTTGCC
GTAAATCCGGAGGCCGAACAGCGGGCACGGAATGTAAACTGCACCTTCTG
GGACTGCCTGAACATCTACAAATGCGAGCACGACCGCCTAAAGGTCTACA
TCTATCCGCTGCAGGAGTTTGTTGACGAGCAGAGCGACAAAACGGCCACC
ACCCTGTCCAGCGAGTACTTCCAAATATTGGAGGCGGTACTAAAGAGTCG
CTACTACACGTCCAATCCGAACGAAGCGTGCCTCTTTCTGCCCAGTTTGG
ATCTCCTGAACCAAAATGTCTTCGACAAGCACTTGGCGGGCGCTGCCTTG
GCTTCACTGGACTTCTGGGATCGTGGTGCCAACCACATCATCTTTAATAT
GCTGCCCGGCGGAGCTCCATCCTATAACACTGTGCTGGATGTGAATACGG
ATAATGCCATCATTTTTGGCGGTGGCTTTGACTCTTGGTCTTATCGCCCG
GGCTTTGATGTCGCCATTCCAGTCTGGAGTCCACGATTGGTGCGACAACA
TGCACATGCGACGGCCCAGAGGAAGTTCCTATTGGTAGTAGCCCAGCTGA
ACATTCTTCCGCGCTTTGTGAGGACTCTGAAGGAGTTATCTCTGGCTCAC
AGCGAGCAATTGCTTCTTTTGGGAGCCTGCGAGAACTTGGATCTCACAAT
GCGCTGCCCTTTGTCGCAGCACCACAAATCGCT
BO05621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8433-PA | 2154 | Ext2-RA | 1..917 | 17..933 | 4560 | 99.8 | Plus |
| CG8433-PB | 2154 | Ext2-RB | 1..917 | 17..933 | 4560 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ext2-RB | 2694 | CG8433-RB | 63..979 | 17..933 | 4570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16147741..16148657 | 933..17 | 4570 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:21:58 has no hits.
BO05621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:52 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8433-PB | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:29 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8433-PB | 1..917 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:48 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RA | 848..1774 | 6..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:31 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RB | 53..979 | 6..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:31 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16147741..16148667 | 6..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:48 Download gff for
BO05621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12035246..12036172 | 6..933 | 99 | | Minus |
BO05621.complete Sequence
2185 bp assembled on 2008-08-14
GenBank Submission: FJ630095
> BO05621.complete
GAAGTTATCAGTCGACATGACAAAAATAAAGAATCTGCTGAGTTTTGTGA
CCCAGTCACGGGCCATATCGCACACCAATCCCAGGGAACATATACTTAAC
TGCCTGACCTATGGGCTACTAGTCATTGTGGCGCTCTGCGCGGGTTTTCT
GCTTTGGGATCTCTCCAGCAGCCCACGGGATGGATTCTTCCATGGGAAAA
GGGACTCGCACACATTAATCCTCGACCTGGAGCACATCCAGGAGCTTGCC
GTAAATCCGGAGGCCGAACAGCGGGCACGGAATGTAAACTGCACCTTCTG
GGACTGCCTGAACATCTACAAATGCGAGCACGACCGCCTAAAGGTCTACA
TCTATCCGCTGCAGGAGTTTGTTGACGAGCAGAGCGACAAAACGGCCACC
ACCCTGTCCAGCGAGTACTTCCAAATATTGGAGGCGGTACTAAAGAGTCG
CTACTACACGTCCAATCCGAACGAAGCGTGCCTCTTTCTGCCCAGTTTGG
ATCTCCTGAACCAAAATGTCTTCGACAAGCACTTGGCGGGCGCTGCCTTG
GCTTCACTGGACTTCTGGGATCGTGGTGCCAACCACATCATCTTTAATAT
GCTGCCCGGCGGAGCTCCATCCTATAACACTGTGCTGGATGTGAATACGG
ATAATGCCATCATTTTTGGCGGTGGCTTTGACTCTTGGTCTTATCGCCCG
GGCTTTGATGTCGCCATTCCAGTCTGGAGTCCACGATTGGTGCGACAACA
TGCACATGCGACGGCCCAGAGGAAGTTCCTATTGGTAGTAGCCCAGCTGA
ACATTCTTCCGCGCTTTGTGAGGACTCTGAGGGAGTTATCTCTGGCTCAC
AGCGAGCAATTGCTTCTTTTGGGAGCCTGCGAGAACTTGGATCTCACAAT
GCGCTGCCCTTTGTCGCAGCACCACAAATCGCTGGAGTATCCTCGGCTGC
TGTCTCGCGGTAAATTTTGCCTGCTAGGTCGTAGTCTTCGCATGGGTCAA
CCCGATCTAGTAGAGATTATGTCTCAGCACTGTATTCCCGTAATTGCCGT
GGACAACTATGTGCTACCCTTCGAAGATGTGATTGATTGGTCATTGGCCT
CCGTTCGTATACGCGAAAACGAACTGCATTCCGTAATGCAGAAGCTAAAA
GCAATATCGAGTGTTAAGATAGTTGAAATGCAGAAGCAAGTGCAGTGGTT
GTTCTCCAAGTACTTCAAAGATCTGAAGACTGTGACACTAACTGCTCTTG
AGGTGCTGGAGAGTAGGATCTTTCCGCTGCGAGCCCGTAGCAGTCGTCAG
TGGAATACCATTGATACCAACGCCCGTTCCACATTCAATCCCCTTTTCCT
GCCGTCGCTGGCACCAAAGTCACAGGGCTTCACCGCCGTCATCCTCACCT
ACGATCGCGTGGAGAGTCTGTTCCTGCTGATTCAGAAGCTCGCTGTAGTG
CCATCATTGCAAAGCATTTTAGTGATTTGGAATAATCAGAAAAAATCTCC
ACCGCACTTATCCACCTTTCCATCTATATCGAAACCGCTGAAAATTCGGC
AAACCAAGGAGAACAAGCTATCCAATCGATTCTATCCATATCCAGAAATA
GAAACGGAAGCTATCTTAACCATAGACGATGACATCATAATGCTGACCAC
TGATGAGTTGGATTTTGGCTATGAAGTTTGGCGAGAGTTTCCTGATCACA
TTGTTGGCTTTCCCAGTCGAATTCATGTTTGGGAAAATGTTACGATGCGC
TGGCACTACGAATCGGAGTGGACGAACCAAATATCAATGGTTCTTACCGG
CGCTGCTTTCCATCACAAGTACTGGAGTCACATGTACACACATGCCATGC
CGGGTGATATCAAGGATTGGGTGGATGAGCACATGAATTGCGAGGACATT
GCCATGAATTTTCTGGTGGCCAACATCACCAACAATCCGCCCATTAAGGT
TACTCCTCGAAAGAAGTTTAAGTGCCCGGAGTGCACCAATACGGAAATGC
TCTCCGCTGATCTGAATCACATGCGTGAACGTTCGGCTTGCATTGATCGC
TTCTCCAAAATCTACGGCCGCATGCCACTTCGCACGGTGGAGTTCAGAGC
GGACCCTGTGTTATTCCGGGACAATTTCCCGGACAAGTTGAAGCGTTACA
ATGATATTGGTAGCTTAGCAAGCTTTCTAGACCAT
BO05621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:56:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ext2-RB | 2154 | CG8433-PB | 1..2151 | 17..2167 | 10755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ext2-RB | 2694 | CG8433-RB | 63..2213 | 17..2167 | 10755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16147166..16148657 | 1508..17 | 7460 | 100 | Minus |
| 2R | 25286936 | 2R | 16146385..16146884 | 2167..1668 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 16146942..16147101 | 1668..1509 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:56:52 has no hits.
BO05621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:24 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10731-RA | 825..2989 | 6..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:53 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RA | 858..3008 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:55 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10731-RA | 835..2985 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:46 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ext2-RB | 63..2213 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:46 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16146383..16146883 | 1669..2169 | 99 | <- | Minus |
| 2R | 16146942..16147101 | 1509..1668 | 100 | <- | Minus |
| 2R | 16147166..16148657 | 17..1508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:53 Download gff for
BO05621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12033888..12034388 | 1669..2169 | 99 | <- | Minus |
| arm_2R | 12034447..12034606 | 1509..1668 | 100 | <- | Minus |
| arm_2R | 12034671..12036162 | 17..1508 | 100 | | Minus |
BO05621.pep Sequence
Translation from 16 to 2185
> BO05621.pep
MTKIKNLLSFVTQSRAISHTNPREHILNCLTYGLLVIVALCAGFLLWDLS
SSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRARNVNCTFWDCLNI
YKCEHDRLKVYIYPLQEFVDEQSDKTATTLSSEYFQILEAVLKSRYYTSN
PNEACLFLPSLDLLNQNVFDKHLAGAALASLDFWDRGANHIIFNMLPGGA
PSYNTVLDVNTDNAIIFGGGFDSWSYRPGFDVAIPVWSPRLVRQHAHATA
QRKFLLVVAQLNILPRFVRTLRELSLAHSEQLLLLGACENLDLTMRCPLS
QHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVL
PFEDVIDWSLASVRIRENELHSVMQKLKAISSVKIVEMQKQVQWLFSKYF
KDLKTVTLTALEVLESRIFPLRARSSRQWNTIDTNARSTFNPLFLPSLAP
KSQGFTAVILTYDRVESLFLLIQKLAVVPSLQSILVIWNNQKKSPPHLST
FPSISKPLKIRQTKENKLSNRFYPYPEIETEAILTIDDDIIMLTTDELDF
GYEVWREFPDHIVGFPSRIHVWENVTMRWHYESEWTNQISMVLTGAAFHH
KYWSHMYTHAMPGDIKDWVDEHMNCEDIAMNFLVANITNNPPIKVTPRKK
FKCPECTNTEMLSADLNHMRERSACIDRFSKIYGRMPLRTVEFRADPVLF
RDNFPDKLKRYNDIGSLASFLDH
BO05621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ext2-PB | 717 | CG8433-PB | 1..717 | 1..717 | 3793 | 100 | Plus |
| ttv-PB | 760 | CG10117-PB | 56..760 | 58..719 | 884 | 32.5 | Plus |
| ttv-PA | 760 | CG10117-PA | 56..760 | 58..719 | 884 | 32.5 | Plus |
| botv-PA | 972 | CG15110-PA | 710..972 | 450..714 | 617 | 46.6 | Plus |
| ttv-PC | 299 | CG10117-PC | 33..299 | 467..719 | 500 | 38.5 | Plus |
