Clone Sequence Records
BO05624.3prime Sequence
873 bp (810 high quality bases) assembled on 2005-12-02
> BO05624.3prime
ATGGTCTAGAAAGCTTGCATTCAAGGTGCCAAACTTGAGACGCAATTGCT
CCAGGAACACAAAGGTGATGATCGTGTGTGGACCCAGACGCACAAATGCC
GGCACATAGCCCTTAAAGAAGCCGAGGGGACCCAGTTTCGCCGTGTGCTT
CACGATGTCCCACAGGCCATTGAACTCGCCGGGTTTCGCGTTCATGGACC
GCGTCTTCAGCACATCCAACGGTTGGGTGAGAGTGGTGGCTATCGTTCCG
GCCACCAGGGAGGCGGTGAAGTGCGTAACCAGGTTGTCTTGGAAATAAGG
CGTGGCCAGCAGGTAGATCTTCGTCTGGTCGTAAAATGCAATTTGGCCAA
TCGTCATCAGGATTCCACGGGCAGTCGCTGCGGTGGCTCCAGAAAAGAGT
CGCTTGAATCCCTCCTGGCGGTAGACCCTAACCAGTCCATCGAAGGCATT
ATTGTAGTTGCGTCGTTGTTGCGGCGGTAGTTTTACGTCGTTCTGCATGC
GCACATTGACCATGTCAGCCGGAGTTCCAACGATTCCTCCGACGAGACCG
GATGCACCTGCCAGGGCCACCTTGCCGCCAAAGCTGTCCGTATTGACGTA
CTTCTTTCCGGCCTCATACACCCCGAATCTCGCAGTGGAGTATGTCAATT
GGCGCAACACTGAGGCGGAGAGGCCGTTGTAGAAGACGAGTACTCCCTGT
TCGCGGGCGAGTTTAGGGATCAACTGGGCCACCGACAGGTGACCCTGTTG
CGTCTGCAGCGTGACCTTGATGAGGTCGAGCGGATGGGTCACCATGGCCG
CACCTACGCTCGCCAATCCGCCAAAGAACCACATCGATTTTCTCTCTTGG
TGGGGCATGTCGACTGATAACTT
BO05624.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8790-PB | 843 | CG8790-RB | 1..840 | 858..19 | 4200 | 100 | Minus |
CG8790-PA | 843 | CG8790-RA | 1..840 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..999 | 858..19 | 4200 | 100 | Minus |
Dic1-RA | 1400 | CG8790-RA | 160..999 | 858..19 | 4200 | 100 | Minus |
Dic1-RB | 1555 | CG8790-RB | 315..1154 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368690 | 457..19 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 13367761..13368161 | 858..458 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:43:31 has no hits.
BO05624.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:57 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:37 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 18..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:46 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1158 | 13..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:17 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1158 | 13..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:17 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 458..858 | 100 | -> | Minus |
3R | 13368252..13368694 | 13..457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:46 Download gff for
BO05624.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 458..858 | 100 | -> | Minus |
arm_3R | 9193974..9194416 | 13..457 | 99 | | Minus |
BO05624.5prime Sequence
871 bp (822 high quality bases) assembled on 2005-11-29
> BO05624.5prime
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCACACAC
GATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACCT
TGAATGCAAGCTTTCTAGAAC
BO05624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8790-PB | 843 | CG8790-RB | 1..778 | 17..794 | 3890 | 100 | Plus |
CG8790-PA | 843 | CG8790-RA | 1..778 | 17..794 | 3890 | 100 | Plus |
CG8790-PB | 843 | CG8790-RB | 779..840 | 794..855 | 310 | 100 | Plus |
CG8790-PA | 843 | CG8790-RA | 779..840 | 794..855 | 310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..999 | 17..855 | 4175 | 99.9 | Plus |
Dic1-RA | 1400 | CG8790-RA | 160..999 | 17..855 | 4175 | 99.9 | Plus |
Dic1-RB | 1555 | CG8790-RB | 315..1154 | 17..855 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368690 | 418..855 | 2145 | 99.8 | Plus |
3R | 32079331 | 3R | 13367761..13368161 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:29:23 has no hits.
BO05624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:58 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:38 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-PA | 1..843 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:18 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1158 | 17..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:57 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1158 | 17..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:57 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 17..417 | 100 | -> | Plus |
3R | 13368252..13368694 | 418..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:18 Download gff for
BO05624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 17..417 | 100 | -> | Plus |
arm_3R | 9193974..9194416 | 418..861 | 99 | | Plus |
BO05624.complete Sequence
874 bp (874 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630096
> BO05624.complete
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACC
TTGAATGCAAGCTTTCTAGACCAT
BO05624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 843 | CG8790-PC | 1..840 | 17..856 | 4200 | 100 | Plus |
Dic1-RA | 843 | CG8790-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Dic1-RB | 843 | CG8790-PB | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-RC | 1587 | CG8790-RC | 160..999 | 17..856 | 4200 | 100 | Plus |
Dic1-RA | 1400 | CG8790-RA | 160..999 | 17..856 | 4200 | 100 | Plus |
Dic1-RB | 1555 | CG8790-RB | 315..1154 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13368252..13368690 | 418..856 | 2195 | 100 | Plus |
3R | 32079331 | 3R | 13367761..13368161 | 17..417 | 2005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:38:56 has no hits.
BO05624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:11 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 1..843 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:43 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 154..997 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:59 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1154 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:11 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8790-RA | 154..997 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:57 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dic1-RB | 315..1154 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:57 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13367761..13368161 | 17..417 | 100 | -> | Plus |
3R | 13368252..13368690 | 418..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:59 Download gff for
BO05624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9193483..9193883 | 17..417 | 100 | -> | Plus |
arm_3R | 9193974..9194412 | 418..858 | 99 | | Plus |
BO05624.pep Sequence
Translation from 16 to 874
> BO05624.pep
MPHQERKSMWFFGGLASVGAAMVTHPLDLIKVTLQTQQGHLSVAQLIPKL
AREQGVLVFYNGLSASVLRQLTYSTARFGVYEAGKKYVNTDSFGGKVALA
GASGLVGGIVGTPADMVNVRMQNDVKLPPQQRRNYNNAFDGLVRVYRQEG
FKRLFSGATAATARGILMTIGQIAFYDQTKIYLLATPYFQDNLVTHFTAS
LVAGTIATTLTQPLDVLKTRSMNAKPGEFNGLWDIVKHTAKLGPLGFFKG
YVPAFVRLGPHTIITFVFLEQLRLKFGTLNASFLDH
BO05624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dic1-PC | 280 | CG8790-PC | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic1-PA | 280 | CG8790-PA | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic1-PB | 280 | CG8790-PB | 1..280 | 1..280 | 1437 | 100 | Plus |
Dic2-PC | 304 | CG4323-PC | 12..287 | 3..279 | 801 | 55.2 | Plus |
Dic2-PA | 304 | CG4323-PA | 12..287 | 3..279 | 801 | 55.2 | Plus |