Clone BO05624 Report

Search the DGRC for BO05624

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG8790-RA
Protein status:BO05624.pep: validated full length
Sequenced Size:874

Clone Sequence Records

BO05624.3prime Sequence

873 bp (810 high quality bases) assembled on 2005-12-02

> BO05624.3prime
ATGGTCTAGAAAGCTTGCATTCAAGGTGCCAAACTTGAGACGCAATTGCT
CCAGGAACACAAAGGTGATGATCGTGTGTGGACCCAGACGCACAAATGCC
GGCACATAGCCCTTAAAGAAGCCGAGGGGACCCAGTTTCGCCGTGTGCTT
CACGATGTCCCACAGGCCATTGAACTCGCCGGGTTTCGCGTTCATGGACC
GCGTCTTCAGCACATCCAACGGTTGGGTGAGAGTGGTGGCTATCGTTCCG
GCCACCAGGGAGGCGGTGAAGTGCGTAACCAGGTTGTCTTGGAAATAAGG
CGTGGCCAGCAGGTAGATCTTCGTCTGGTCGTAAAATGCAATTTGGCCAA
TCGTCATCAGGATTCCACGGGCAGTCGCTGCGGTGGCTCCAGAAAAGAGT
CGCTTGAATCCCTCCTGGCGGTAGACCCTAACCAGTCCATCGAAGGCATT
ATTGTAGTTGCGTCGTTGTTGCGGCGGTAGTTTTACGTCGTTCTGCATGC
GCACATTGACCATGTCAGCCGGAGTTCCAACGATTCCTCCGACGAGACCG
GATGCACCTGCCAGGGCCACCTTGCCGCCAAAGCTGTCCGTATTGACGTA
CTTCTTTCCGGCCTCATACACCCCGAATCTCGCAGTGGAGTATGTCAATT
GGCGCAACACTGAGGCGGAGAGGCCGTTGTAGAAGACGAGTACTCCCTGT
TCGCGGGCGAGTTTAGGGATCAACTGGGCCACCGACAGGTGACCCTGTTG
CGTCTGCAGCGTGACCTTGATGAGGTCGAGCGGATGGGTCACCATGGCCG
CACCTACGCTCGCCAATCCGCCAAAGAACCACATCGATTTTCTCTCTTGG
TGGGGCATGTCGACTGATAACTT

BO05624.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8790-PB 843 CG8790-RB 1..840 858..19 4200 100 Minus
CG8790-PA 843 CG8790-RA 1..840 858..19 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..999 858..19 4200 100 Minus
Dic1-RA 1400 CG8790-RA 160..999 858..19 4200 100 Minus
Dic1-RB 1555 CG8790-RB 315..1154 858..19 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368690 457..19 2195 100 Minus
3R 32079331 3R 13367761..13368161 858..458 2005 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:43:31 has no hits.

BO05624.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:57 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 18..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:37 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 18..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:46 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1158 13..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:17 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1158 13..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:17 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 458..858 100 -> Minus
3R 13368252..13368694 13..457 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:46 Download gff for BO05624.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 458..858 100 -> Minus
arm_3R 9193974..9194416 13..457 99   Minus

BO05624.5prime Sequence

871 bp (822 high quality bases) assembled on 2005-11-29

> BO05624.5prime
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCACACAC
GATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACCT
TGAATGCAAGCTTTCTAGAAC

BO05624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8790-PB 843 CG8790-RB 1..778 17..794 3890 100 Plus
CG8790-PA 843 CG8790-RA 1..778 17..794 3890 100 Plus
CG8790-PB 843 CG8790-RB 779..840 794..855 310 100 Plus
CG8790-PA 843 CG8790-RA 779..840 794..855 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..999 17..855 4175 99.9 Plus
Dic1-RA 1400 CG8790-RA 160..999 17..855 4175 99.9 Plus
Dic1-RB 1555 CG8790-RB 315..1154 17..855 4175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368690 418..855 2145 99.8 Plus
3R 32079331 3R 13367761..13368161 17..417 2005 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:23 has no hits.

BO05624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:58 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 17..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:38 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8790-PA 1..843 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:18 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1158 17..861 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:57 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1158 17..861 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:57 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 17..417 100 -> Plus
3R 13368252..13368694 418..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:18 Download gff for BO05624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 17..417 100 -> Plus
arm_3R 9193974..9194416 418..861 99   Plus

BO05624.complete Sequence

874 bp (874 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630096

> BO05624.complete
GAAGTTATCAGTCGACATGCCCCACCAAGAGAGAAAATCGATGTGGTTCT
TTGGCGGATTGGCGAGCGTAGGTGCGGCCATGGTGACCCATCCGCTCGAC
CTCATCAAGGTCACGCTGCAGACGCAACAGGGTCACCTGTCGGTGGCCCA
GTTGATCCCTAAACTCGCCCGCGAACAGGGAGTACTCGTCTTCTACAACG
GCCTCTCCGCCTCAGTGTTGCGCCAATTGACATACTCCACTGCGAGATTC
GGGGTGTATGAGGCCGGAAAGAAGTACGTCAATACGGACAGCTTTGGCGG
CAAGGTGGCCCTGGCAGGTGCATCCGGTCTCGTCGGAGGAATCGTTGGAA
CTCCGGCTGACATGGTCAATGTGCGCATGCAGAACGACGTAAAACTACCG
CCGCAACAACGACGCAACTACAATAATGCCTTCGATGGACTGGTTAGGGT
CTACCGCCAGGAGGGATTCAAGCGACTCTTTTCTGGAGCCACCGCAGCGA
CTGCCCGTGGAATCCTGATGACGATTGGCCAAATTGCATTTTACGACCAG
ACGAAGATCTACCTGCTGGCCACGCCTTATTTCCAAGACAACCTGGTTAC
GCACTTCACCGCCTCCCTGGTGGCCGGAACGATAGCCACCACTCTCACCC
AACCGTTGGATGTGCTGAAGACGCGGTCCATGAACGCGAAACCCGGCGAG
TTCAATGGCCTGTGGGACATCGTGAAGCACACGGCGAAACTGGGTCCCCT
CGGCTTCTTTAAGGGCTATGTGCCGGCATTTGTGCGTCTGGGTCCACACA
CGATCATCACCTTTGTGTTCCTGGAGCAATTGCGTCTCAAGTTTGGCACC
TTGAATGCAAGCTTTCTAGACCAT

BO05624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 843 CG8790-PC 1..840 17..856 4200 100 Plus
Dic1-RA 843 CG8790-PA 1..840 17..856 4200 100 Plus
Dic1-RB 843 CG8790-PB 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-RC 1587 CG8790-RC 160..999 17..856 4200 100 Plus
Dic1-RA 1400 CG8790-RA 160..999 17..856 4200 100 Plus
Dic1-RB 1555 CG8790-RB 315..1154 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13368252..13368690 418..856 2195 100 Plus
3R 32079331 3R 13367761..13368161 17..417 2005 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:38:56 has no hits.

BO05624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:11 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 1..843 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:43 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 154..997 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:59 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1154 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:11 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
CG8790-RA 154..997 17..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:57 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
Dic1-RB 315..1154 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:57 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13367761..13368161 17..417 100 -> Plus
3R 13368252..13368690 418..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:59 Download gff for BO05624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9193483..9193883 17..417 100 -> Plus
arm_3R 9193974..9194412 418..858 99   Plus

BO05624.pep Sequence

Translation from 16 to 874

> BO05624.pep
MPHQERKSMWFFGGLASVGAAMVTHPLDLIKVTLQTQQGHLSVAQLIPKL
AREQGVLVFYNGLSASVLRQLTYSTARFGVYEAGKKYVNTDSFGGKVALA
GASGLVGGIVGTPADMVNVRMQNDVKLPPQQRRNYNNAFDGLVRVYRQEG
FKRLFSGATAATARGILMTIGQIAFYDQTKIYLLATPYFQDNLVTHFTAS
LVAGTIATTLTQPLDVLKTRSMNAKPGEFNGLWDIVKHTAKLGPLGFFKG
YVPAFVRLGPHTIITFVFLEQLRLKFGTLNASFLDH

BO05624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dic1-PC 280 CG8790-PC 1..280 1..280 1437 100 Plus
Dic1-PA 280 CG8790-PA 1..280 1..280 1437 100 Plus
Dic1-PB 280 CG8790-PB 1..280 1..280 1437 100 Plus
Dic2-PC 304 CG4323-PC 12..287 3..279 801 55.2 Plus
Dic2-PA 304 CG4323-PA 12..287 3..279 801 55.2 Plus