Clone Sequence Records
BO05625.3prime Sequence
909 bp (897 high quality bases) assembled on 2005-12-02
> BO05625.3prime
ATGGTCTAGAAAGCTTGCGCGCGGTGCAATTAGCTCGTACATGGCGTACT
TCCATGTCCACGCGCGCACCAGTTGCTCGAACCTTTCGCGCTCGTGCTCA
TAGATGTATCCAAGTTCAGGCTCCATGCAGACTTCGGTATACGGATCGGT
CAGCAGGCTCTGCACAGAAAGCAGCACCTTGGCCACGTTCAGCGCCAGAG
ACCAGTTGTGCTGCTGGAAGATGTCGATGCCCACGTCCCCATGCCGCGAA
ACATTCGGATGCAGGATTTTGGTGAGGAAACGTACTGTGGGCGGCGTCAT
CGGATATCGCTCCGGGAAGTATATGAACAGGAAGAACTTGCCGCCTTCGT
AGGGACTGCCCGGTGGCCCCAGAATTGTCGCCTGCCAGTAGTTGTTTTGC
CGATCCAACGGTATGGCCGATATGCCCTCAGATTCGTAGCTGTTCAGCAG
ATTGGCTTCACCGCGCAGAAAGTTGTTGCGCATTACATTGCCCGGCTCCC
GATCGCCCAGCTGTGGATCTGCCTCCTGTGCATCCTGACCCCGACCGCCC
ATCTCAATCAGGCAAGTGCGACAGAAGCAGGAAGACATCAGTGCCCCGTA
CAGCCGATACCAGTTTGGATTGTCTGCCAAACTGTCGAACAGCGGCCAGC
GCTGCTTGATATACGCCTTCCACATGCTCTGGGCCGTGTTTTTCCCGACA
ATGTCGTGCCATTGCTTGCAAACTTCACTAGCCATCCACAGCGACATGTC
GTCCAAATAGGCAAATATTTTCAGCATCACCTCGACGGGTATTATGTTGA
CAATGTTTCTGCTGCTGCCACTTGCTCCGCTTCCGCTGGCGGCGTTGTAT
TCATGCACTCGCGCCCTTCCATCGGCCAGCTCATGCATGTAATGGGGCAG
AGCAAGGGA
BO05625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 589..1473 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 655..1546 | 909..19 | 4435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443073..4443957 | 19..903 | 4425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 15:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11081..11134 | 855..802 | 108 | 66.7 | Minus |
BO05625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:26:59 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 583..1476 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:39 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 583..1476 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:21 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 656..1546 | 19..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:57 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 656..1546 | 19..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:57 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4443073..4443963 | 19..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:21 Download gff for
BO05625.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443073..4443963 | 19..908 | 99 | | Plus |
BO05625.5prime Sequence
881 bp (880 high quality bases) assembled on 2005-11-29
> BO05625.5prime
GAAGTTATCAGTCGACATGACTAGCTGCGTGCCAGCGCATCAGCAAAAGG
ACCAGGAGCAGTTGCTAAAGGAACTGGCCAGCAGTGGCGACGAGATGGAC
GACCCGGACGATCCGGACCAGGAACACCACCAGCTGGTAGAGCCGACCTT
CTCTTTTTCGAATAGTAACACCTGCTGGGTGTGCAACGGCTACTATGGGC
CCAACTTCGGGGAGCCGTTGTGCGGCGCCTGCCACGCCTTCCTGTACAAC
GCACAGCGGGCGGAGGAGCTGCTCACGGAGCTTTCCGATGACGAGGATTC
TGGGAACGACGAGCCGCCGTTCAAGGACAAGCAGGAAGACGAGGAGACCG
AAAACGACGTAGACATCATGGGCTTTGAGGATCTGGAGGACCCCCAACCG
GCAGCCGTGCCACAACATCCAAATCCGCAGCCACCAATGGAGCCACAGGA
TCAACAGCCAGCCCAACCAGTTATAGATCTGCCACAGCCGGTGCCGGAGG
CTGCGGCACCACGACGCGAGTCTCCGGAGCGCGACTTTGAGCACGAGAGA
GCCATTAATCCCTTCCTGCTGCCCATTAAGCGTCCGCGGGCCACGGCTCC
CTTGGCTCTGCCCCATTACATGCATGAGCTGGCCGATGGAAGGGCGCGAG
TGCATGAATACAACGCCGCCAGCGGAAGCGGAGCAAGTGGCAGCAGCAGA
AACATTGTCAACATAATACCCGTCGAGGTGATGCTGAAAATATTTGCCTA
TTTGGACGACATGTCGCTGTGGATGGCTAGTGAAGTTTGCAAGCAATGGC
ACGACATTGTCGGGAAAACACGGCCCAGAGCATGTGGAAGGCGTATATCA
NGCAGCGCTGGCCGCTGTTCGACAGTTTGGC
BO05625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15437-PA | 1476 | morgue-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
| CG15437-PA | 1476 | morgue-RA | 800..866 | 815..881 | 316 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 74..939 | 17..881 | 4294 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443680..4444402 | 881..160 | 3554 | 99.7 | Minus |
| 2L | 23513712 | 2L | 4444464..4444607 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 11081..11134 | 653..706 | 108 | 66.7 | Plus |
BO05625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:00 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..866 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:41 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15437-PA | 1..866 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:12 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 66..939 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:21 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 66..939 | 8..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:21 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4443680..4444401 | 161..881 | 99 | <- | Minus |
| 2L | 4444464..4444615 | 8..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:12 Download gff for
BO05625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443680..4444401 | 161..881 | 99 | <- | Minus |
| arm_2L | 4444464..4444615 | 8..160 | 97 | | Minus |
BO05625.complete Sequence
1507 bp (1507 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630097
> BO05625.complete
GAAGTTATCAGTCGACATGACTAGCTGCGTGCCAGCGCATCAGCAAAAGG
ACCAGGAGCAGTTGCTAAAGGAACTGGCCAGCAGTGGCGACGAGATGGAC
GACCCGGACGATCCGGACCAGGAACACCACCAGCTGGTAGAGCCGACCTT
CTCTTTTTCGAATAGTAACACCTGCTGGGTGTGCAACGGCTACTATGGGC
CCAACTTCGGGGAGCCGTTGTGCGGCGCCTGCCACGCCTTCCTGTACAAC
GCACAGCGGGCGGAGGAGCTGCTCACGGAGCTTTCCGATGACGAGGATTC
TGGGAACGACGAGCCGCCGTTCAAGGACAAGCAGGAAGACGAGGAGACCG
AAAACGACGTAGACATCATGGGCTTTGAGGATCTGGAGGACCCCCAACCG
GCAGCCGTGCCACAACATCCAAATCCGCAGCCACCAATGGAGCCACAGGA
TCAACAGCCAGCCCAACCAGTTATAGATCTGCCACAGCCGGTGCCGGAGG
CTGCGGCACCACGACGCGAGTCTCCGGAGCGCGACTTTGAGCACGAGAGA
GCCATTAATCCCTTCCTGCTGCCCATTAAGCGTCCGCGGGCCACGGCTCC
CTTGGCTCTGCCCCATTACATGCATGAGCTGGCCGATGGAAGGGCGCGAG
TGCATGAATACAACGCCGCCAGCGGAAGCGGAGCAAGTGGCAGCAGCAGA
AACATTGTCAACATAATACCCGTCGAGGTGATGCTGAAAATATTTGCCTA
TTTGGACGACATGTCGCTGTGGATGGCTAGTGAAGTTTGCAAGCAATGGC
ACGACATTGTCGGGAAAAACACGGCCCAGAGCATGTGGAAGGCGTATATC
AAGCAGCGCTGGCCGCTGTTCGACAGTTTGGCAGACAATCCAAACTGGTA
TCGGCTGTACGGGGCACTGATGTCTTCCTGCTTCTGTCGCACTTGCCTGA
TTGAGATGGGCGGTCGGGGTCAGGATGCACAGGAGGCAGATCCACAGCTG
GGCGATCGGGAGCCGGGCAATGTAATGCGCAACAACTTTCTGCGCGGTGA
AGCCAATCTGCTGAACAGCTACGAATCTGAGGGCATATCGGCCATACCGT
TGGATCGGCAAAACAACTACTGGCAGGCGACAATTCTGGGGCCACCGGGC
AGTCCCTACGAAGGCGGCAAGTTCTTCCTGTTCATATACTTCCCGGAGCG
ATATCCGATGACGCCGCCCACAGTACGTTTCCTCACCAAAATCCTGCATC
CGAATGTTTCGCGGCATGGGGACGTGGGCATCGACATCTTCCAGCAGCAC
AACTGGTCTCTGGCGCTGAACGTGGCCAAGGTGCTGCTTTCTGTGCAGAG
CCTGCTGACCGATCCGTATACCGAAGTCTGCATGGAGCCTGAACTTGGAT
ACATCTATGAGCACGAGCGCGAAAGGTTCGAGCAACTGGTGCGCGCGTGG
ACATGGAAGTACGCCATGTACGAGCTAATTGCACCGCGCGCAAGCTTTCT
AGACCAT
BO05625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1476 | CG15437-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-RA | 1749 | CG15437-RA | 74..1546 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4443073..4444402 | 1489..160 | 6650 | 100 | Minus |
| 2L | 23513712 | 2L | 4444464..4444607 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:43:03 has no hits.
BO05625.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:14 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 1..1476 | 17..1490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:47 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 63..1543 | 8..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:08 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 74..1546 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:14 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 63..1543 | 8..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:22 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| morgue-RA | 74..1546 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:22 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4443071..4444401 | 161..1491 | 99 | <- | Minus |
| 2L | 4444464..4444607 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:08 Download gff for
BO05625.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4443071..4444401 | 161..1491 | 99 | <- | Minus |
| arm_2L | 4444464..4444607 | 17..160 | 100 | | Minus |
BO05625.pep Sequence
Translation from 16 to 1507
> BO05625.pep
MTSCVPAHQQKDQEQLLKELASSGDEMDDPDDPDQEHHQLVEPTFSFSNS
NTCWVCNGYYGPNFGEPLCGACHAFLYNAQRAEELLTELSDDEDSGNDEP
PFKDKQEDEETENDVDIMGFEDLEDPQPAAVPQHPNPQPPMEPQDQQPAQ
PVIDLPQPVPEAAAPRRESPERDFEHERAINPFLLPIKRPRATAPLALPH
YMHELADGRARVHEYNAASGSGASGSSRNIVNIIPVEVMLKIFAYLDDMS
LWMASEVCKQWHDIVGKNTAQSMWKAYIKQRWPLFDSLADNPNWYRLYGA
LMSSCFCRTCLIEMGGRGQDAQEADPQLGDREPGNVMRNNFLRGEANLLN
SYESEGISAIPLDRQNNYWQATILGPPGSPYEGGKFFLFIYFPERYPMTP
PTVRFLTKILHPNVSRHGDVGIDIFQQHNWSLALNVAKVLLSVQSLLTDP
YTEVCMEPELGYIYEHERERFEQLVRAWTWKYAMYELIAPRASFLDH
BO05625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| morgue-PA | 491 | CG15437-PA | 1..491 | 1..491 | 2680 | 100 | Plus |
| eff-PC | 147 | CG7425-PC | 22..147 | 358..484 | 336 | 50.4 | Plus |
| eff-PB | 147 | CG7425-PB | 22..147 | 358..484 | 336 | 50.4 | Plus |
| eff-PA | 147 | CG7425-PA | 22..147 | 358..484 | 336 | 50.4 | Plus |
| CG3473-PB | 151 | CG3473-PB | 22..149 | 356..484 | 259 | 42.6 | Plus |
