Clone Sequence Records
BO05626.3prime Sequence
885 bp (858 high quality bases) assembled on 2005-12-02
> BO05626.3prime
ATGGTCTAGAAAGCTTGCGGCGGCGGTGGTCTGCTGTGGTTCCTGGGTGG
TGCTGGTGGAGGCGACAGCCGACGATTCCGGCGCCTTTTCGTTGAGCGCC
AGCCAGGGACATCGCTTCTGCAGCTCCATGCGGTATCTGGGATGACTTAT
GGCGTACACGAACGGATCGATGCAGGCCACCATTTTGCAGGCACAGGCGG
GAATCATTGTGGCTCCGGGCGTCAAAAGGGTCTTATCCCCAAAGGCGCCA
ATCAGCGACATAACTCCGTACGGCGTCCACGAGCAAAAGAACAGGAAGCA
TATGGTGATGGCCGCTTTGGCTATCCGGATTTCCGCCGTCTCCTTGTTTT
TGTCCACATTCGAACGCAGCGATTCCACGTTCATCTTCTTGGCCTGATCC
CGCAGTGCTTTCTCGTGGCTAAAGACATGGCCCACAATCTGGGAGTAGTA
GTACGTGATCATCGTGGTGGGACACACGAAGCTGAAGAAGAAGATGCAGG
CCACAAAGAGTCGCGTATCGAAGTTATCGGTGAGATAGTCAAAGGTGCAG
GATGTCAGATATCCCTCCGGCACAAAACGGCCCCAAGTCTCCGTGTAGCA
GGCAACCACCCATGGAGTGGCGTACATGTAGATGAATATGATCATGGCAA
TGGCCTTGCCATGCGTCATCTTGCCCTCCATGGGTCGAGTGATCACATTG
AATCGATCGTAGGCTATAAACGCATTGGTGGCACCGGCAGCGATTCCCGT
ATAGGAGCCAATGATTCCAAAGATCTGGCATCCCAGATGACCCAGCGCAT
ATCCCTGGTGGAAGCTATTGTAGATGAATATCGGAGTCTTGACCATCATC
ATGAAGTCGCAGAAGGCCAGATTGATGACCAGTAT
BO05626.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10888-PA | 1152 | Rh3-RA | 283..1149 | 885..19 | 4335 | 100 | Minus |
CG9668-PA | 1137 | Rh4-RA | 703..869 | 453..287 | 310 | 87.4 | Minus |
CG9668-PA | 1137 | Rh4-RA | 965..1057 | 191..99 | 215 | 89.2 | Minus |
CG5192-PB | 1156 | Rh6-RB | 260..291 | 875..844 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 307..1173 | 885..19 | 4335 | 100 | Minus |
Rh4-RA | 1349 | CG9668-RA | 330..1118 | 873..85 | 1275 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081278..20082144 | 19..885 | 4335 | 100 | Plus |
3L | 28110227 | 3L | 16852758..16853240 | 85..567 | 1170 | 82.8 | Plus |
3L | 28110227 | 3L | 16862004..16862188 | 689..873 | 190 | 73.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:32:09 has no hits.
BO05626.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:01 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-PA | 283..1152 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:43 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10888-PA | 283..1152 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:17 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 307..1176 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:10 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 307..1176 | 15..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:10 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081275..20082144 | 15..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:17 Download gff for
BO05626.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15906997..15907866 | 15..885 | 99 | | Plus |
BO05626.5prime Sequence
908 bp (829 high quality bases) assembled on 2005-11-29
> BO05626.5prime
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGNCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGA
BO05626.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10888-PA | 1152 | Rh3-RA | 1..892 | 17..908 | 4441 | 99.8 | Plus |
CG9668-PA | 1137 | Rh4-RA | 703..824 | 731..852 | 260 | 88.5 | Plus |
CG5192-PB | 1156 | Rh6-RB | 260..291 | 309..340 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 24..916 | 16..908 | 4454 | 99.9 | Plus |
Rh4-RA | 1349 | CG9668-RA | 132..916 | 113..897 | 914 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081535..20082427 | 908..16 | 4454 | 99.9 | Minus |
3L | 28110227 | 3L | 16852960..16853240 | 897..617 | 689 | 82.9 | Minus |
3L | 28110227 | 3L | 16862004..16862386 | 495..113 | 310 | 72.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:53:54 has no hits.
BO05626.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:02 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:43 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10888-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:38 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..915 | 16..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:43 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..915 | 16..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:43 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081536..20082427 | 16..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:38 Download gff for
BO05626.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15907258..15908149 | 16..907 | 99 | | Minus |
BO05626.complete Sequence
1183 bp (1183 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630098
> BO05626.complete
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGAGTTATGTCGCTGATTGGCGCCTTTGGGGATA
AGACCCTTTTGACGCCCGGAGCCACAATGATTCCCGCCTGTGCCTGCAAA
ATGGTGGCCTGCATCGATCCGTTCGTGTACGCCATAAGTCATCCCAGATA
CCGCATGGAGCTGCAGAAGCGATGTCCCTGGCTGGCGCTCAACGAAAAGG
CGCCGGAATCGTCGGCTGTCGCCTCCACCAGCACCACCCAGGAACCACAG
CAGACCACCGCCGCCGCAAGCTTTCTAGACCAT
BO05626.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1152 | CG10888-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Rh4-RA | 1137 | CG9668-PA | 85..1071 | 113..1099 | 1320 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-RA | 1391 | CG10888-RA | 24..1173 | 16..1165 | 5750 | 100 | Plus |
Rh4-RA | 1349 | CG9668-RA | 132..1118 | 113..1099 | 1320 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20081278..20082427 | 1165..16 | 5750 | 100 | Minus |
3L | 28110227 | 3L | 16852758..16853240 | 1099..617 | 1170 | 82.8 | Minus |
3L | 28110227 | 3L | 16862004..16862386 | 495..113 | 310 | 72.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:31:53 has no hits.
BO05626.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:15 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 1..1152 | 17..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:49 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..1176 | 16..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:33 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 25..1173 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:15 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 24..1176 | 16..1169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:08 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh3-RA | 25..1173 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:08 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20081276..20082426 | 17..1167 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:33 Download gff for
BO05626.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15906998..15908148 | 17..1167 | 99 | | Minus |
BO05626.pep Sequence
Translation from 16 to 1183
> BO05626.pep
MESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHWLTY
PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
AFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAF
IAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVP
EGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFS
HEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPY
GVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
KRCPWLALNEKAPESSAVASTSTTQEPQQTTAAASFLDH
BO05626.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh3-PA | 383 | CG10888-PA | 1..383 | 1..383 | 2039 | 100 | Plus |
Rh4-PA | 378 | CG9668-PA | 12..378 | 18..383 | 1459 | 74.2 | Plus |
Rh5-PB | 382 | CG5279-PB | 25..372 | 31..385 | 841 | 44.5 | Plus |
Rh5-PA | 382 | CG5279-PA | 25..372 | 31..385 | 841 | 44.5 | Plus |
Rh2-PA | 381 | CG16740-PA | 1..376 | 1..376 | 609 | 38.4 | Plus |