Clone BO05626 Report

Search the DGRC for BO05626

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRh3-RA
Protein status:BO05626.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO05626.3prime Sequence

885 bp (858 high quality bases) assembled on 2005-12-02

> BO05626.3prime
ATGGTCTAGAAAGCTTGCGGCGGCGGTGGTCTGCTGTGGTTCCTGGGTGG
TGCTGGTGGAGGCGACAGCCGACGATTCCGGCGCCTTTTCGTTGAGCGCC
AGCCAGGGACATCGCTTCTGCAGCTCCATGCGGTATCTGGGATGACTTAT
GGCGTACACGAACGGATCGATGCAGGCCACCATTTTGCAGGCACAGGCGG
GAATCATTGTGGCTCCGGGCGTCAAAAGGGTCTTATCCCCAAAGGCGCCA
ATCAGCGACATAACTCCGTACGGCGTCCACGAGCAAAAGAACAGGAAGCA
TATGGTGATGGCCGCTTTGGCTATCCGGATTTCCGCCGTCTCCTTGTTTT
TGTCCACATTCGAACGCAGCGATTCCACGTTCATCTTCTTGGCCTGATCC
CGCAGTGCTTTCTCGTGGCTAAAGACATGGCCCACAATCTGGGAGTAGTA
GTACGTGATCATCGTGGTGGGACACACGAAGCTGAAGAAGAAGATGCAGG
CCACAAAGAGTCGCGTATCGAAGTTATCGGTGAGATAGTCAAAGGTGCAG
GATGTCAGATATCCCTCCGGCACAAAACGGCCCCAAGTCTCCGTGTAGCA
GGCAACCACCCATGGAGTGGCGTACATGTAGATGAATATGATCATGGCAA
TGGCCTTGCCATGCGTCATCTTGCCCTCCATGGGTCGAGTGATCACATTG
AATCGATCGTAGGCTATAAACGCATTGGTGGCACCGGCAGCGATTCCCGT
ATAGGAGCCAATGATTCCAAAGATCTGGCATCCCAGATGACCCAGCGCAT
ATCCCTGGTGGAAGCTATTGTAGATGAATATCGGAGTCTTGACCATCATC
ATGAAGTCGCAGAAGGCCAGATTGATGACCAGTAT

BO05626.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10888-PA 1152 Rh3-RA 283..1149 885..19 4335 100 Minus
CG9668-PA 1137 Rh4-RA 703..869 453..287 310 87.4 Minus
CG9668-PA 1137 Rh4-RA 965..1057 191..99 215 89.2 Minus
CG5192-PB 1156 Rh6-RB 260..291 875..844 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 307..1173 885..19 4335 100 Minus
Rh4-RA 1349 CG9668-RA 330..1118 873..85 1275 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081278..20082144 19..885 4335 100 Plus
3L 28110227 3L 16852758..16853240 85..567 1170 82.8 Plus
3L 28110227 3L 16862004..16862188 689..873 190 73.5 Plus
Blast to na_te.dros performed on 2015-02-12 00:32:09 has no hits.

BO05626.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:01 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-PA 283..1152 15..885 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:43 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10888-PA 283..1152 15..885 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:17 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 307..1176 15..885 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:06:10 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 307..1176 15..885 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:06:10 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20081275..20082144 15..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:17 Download gff for BO05626.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15906997..15907866 15..885 99   Plus

BO05626.5prime Sequence

908 bp (829 high quality bases) assembled on 2005-11-29

> BO05626.5prime
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGNCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGA

BO05626.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10888-PA 1152 Rh3-RA 1..892 17..908 4441 99.8 Plus
CG9668-PA 1137 Rh4-RA 703..824 731..852 260 88.5 Plus
CG5192-PB 1156 Rh6-RB 260..291 309..340 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 24..916 16..908 4454 99.9 Plus
Rh4-RA 1349 CG9668-RA 132..916 113..897 914 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081535..20082427 908..16 4454 99.9 Minus
3L 28110227 3L 16852960..16853240 897..617 689 82.9 Minus
3L 28110227 3L 16862004..16862386 495..113 310 72.1 Minus
Blast to na_te.dros performed on 2015-02-11 04:53:54 has no hits.

BO05626.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:02 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:43 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10888-PA 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:38 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..915 16..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:43 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..915 16..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:43 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20081536..20082427 16..907 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:38 Download gff for BO05626.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15907258..15908149 16..907 99   Minus

BO05626.complete Sequence

1183 bp (1183 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630098

> BO05626.complete
GAAGTTATCAGTCGACATGGAGTCCGGTAACGTGTCGTCGAGTCTGTTTG
GCAACGTGTCCACCGCGCTGCGGCCGGAGGCGCGGCTCTCCGCCGAAACG
CGTCTGCTGGGCTGGAATGTGCCGCCGGAGGAGCTGCGGCACATTCCCGA
GCACTGGCTAACTTACCCGGAGCCGCCCGAATCGATGAACTACCTGCTGG
GCACGCTCTACATCTTCTTCACCCTGATGTCGATGCTGGGCAATGGACTG
GTGATTTGGGTCTTCTCCGCAGCCAAATCGCTGCGAACTCCCTCCAATAT
ACTGGTCATCAATCTGGCCTTCTGCGACTTCATGATGATGGTCAAGACTC
CGATATTCATCTACAATAGCTTCCACCAGGGATATGCGCTGGGTCATCTG
GGATGCCAGATCTTTGGAATCATTGGCTCCTATACGGGAATCGCTGCCGG
TGCCACCAATGCGTTTATAGCCTACGATCGATTCAATGTGATCACTCGAC
CCATGGAGGGCAAGATGACGCATGGCAAGGCCATTGCCATGATCATATTC
ATCTACATGTACGCCACTCCATGGGTGGTTGCCTGCTACACGGAGACTTG
GGGCCGTTTTGTGCCGGAGGGATATCTGACATCCTGCACCTTTGACTATC
TCACCGATAACTTCGATACGCGACTCTTTGTGGCCTGCATCTTCTTCTTC
AGCTTCGTGTGTCCCACCACGATGATCACGTACTACTACTCCCAGATTGT
GGGCCATGTCTTTAGCCACGAGAAAGCACTGCGGGATCAGGCCAAGAAGA
TGAACGTGGAATCGCTGCGTTCGAATGTGGACAAAAACAAGGAGACGGCG
GAAATCCGGATAGCCAAAGCGGCCATCACCATATGCTTCCTGTTCTTTTG
CTCGTGGACGCCGTACGGAGTTATGTCGCTGATTGGCGCCTTTGGGGATA
AGACCCTTTTGACGCCCGGAGCCACAATGATTCCCGCCTGTGCCTGCAAA
ATGGTGGCCTGCATCGATCCGTTCGTGTACGCCATAAGTCATCCCAGATA
CCGCATGGAGCTGCAGAAGCGATGTCCCTGGCTGGCGCTCAACGAAAAGG
CGCCGGAATCGTCGGCTGTCGCCTCCACCAGCACCACCCAGGAACCACAG
CAGACCACCGCCGCCGCAAGCTTTCTAGACCAT

BO05626.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1152 CG10888-PA 1..1149 17..1165 5745 100 Plus
Rh4-RA 1137 CG9668-PA 85..1071 113..1099 1320 76 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-RA 1391 CG10888-RA 24..1173 16..1165 5750 100 Plus
Rh4-RA 1349 CG9668-RA 132..1118 113..1099 1320 76 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20081278..20082427 1165..16 5750 100 Minus
3L 28110227 3L 16852758..16853240 1099..617 1170 82.8 Minus
3L 28110227 3L 16862004..16862386 495..113 310 72.1 Minus
Blast to na_te.dros performed on 2014-11-27 15:31:53 has no hits.

BO05626.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:15 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 1..1152 17..1169 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:49 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..1176 16..1169 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:33 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 25..1173 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:15 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 24..1176 16..1169 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:08 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
Rh3-RA 25..1173 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:08 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20081276..20082426 17..1167 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:33 Download gff for BO05626.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15906998..15908148 17..1167 99   Minus

BO05626.pep Sequence

Translation from 16 to 1183

> BO05626.pep
MESGNVSSSLFGNVSTALRPEARLSAETRLLGWNVPPEELRHIPEHWLTY
PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
AFCDFMMMVKTPIFIYNSFHQGYALGHLGCQIFGIIGSYTGIAAGATNAF
IAYDRFNVITRPMEGKMTHGKAIAMIIFIYMYATPWVVACYTETWGRFVP
EGYLTSCTFDYLTDNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFS
HEKALRDQAKKMNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPY
GVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQ
KRCPWLALNEKAPESSAVASTSTTQEPQQTTAAASFLDH

BO05626.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rh3-PA 383 CG10888-PA 1..383 1..383 2039 100 Plus
Rh4-PA 378 CG9668-PA 12..378 18..383 1459 74.2 Plus
Rh5-PB 382 CG5279-PB 25..372 31..385 841 44.5 Plus
Rh5-PA 382 CG5279-PA 25..372 31..385 841 44.5 Plus
Rh2-PA 381 CG16740-PA 1..376 1..376 609 38.4 Plus