Clone Sequence Records
BO05627.3prime Sequence
901 bp (840 high quality bases) assembled on 2005-12-02
> BO05627.3prime
ATGGTCTAGAAAGCTTGCGCAGGCTATGTCCGTGGTCACGCTCTTGATGC
TCTCCGAGCTGAAGTGCACGCAGCCGTACTTGCAGACCAACGTCCACACA
TATGGAATGAAGAACTCCTCGGGAGCGTCCTCCTCGACGTACTTAAACTT
AAGATCCGGGAACTTTCTCAGTCGATCGCTGGACCACTGACTGGCACCTT
TAGATATAACCTCGAGCACTTCATTGACCCCAAGCTCGCCTCTCTGCTCC
TGGACACGCTGCAGACGCGAGGAGAAGAAACCGACAACCATGTCTATGTT
TTGGATGACATCCTGGAAGGCGTGGTGACTGCGGAAGCCCTCGAAGACGC
TGCGCTTGTACAAAAGAGTGTACACCAAGTTGGGACAGTAGACCAACTGG
TTTGTGAGGCAGGAGTTTAGGATTTCCAGCACCATGCGCAACACCTCCTC
CAGCACGCTCAGATCTTGTAGCATGTCTTCCGGGGTCGTCGAGACGTTCA
CAAACACTGCGCTATCGGCCGGCTCCTTGAGCTGCGCATCCAGGCGCGTA
TGCTTCCGAGCGAGCGTTTCGAACAGCGAGACCAGTCGCTGTGCCACGTA
AGGGTGTAGAGCGCGGAAGTGGCCGGACATGTTGGCCAGCGCCGCCAGGC
AATTGGTGTGCAAGTACTTGTCGCGCATCTTCAGCATGTTGTACTGTATG
GTGCGGATGACGATAAGGATTAGGATGCCGCCCAGCGATATCTCCGATAT
GGTGCGTTCCGTATACCATGTGATGTTTTTTAGCATTATGGTGTGCACAT
TCTTGTTGAAGCCCTCGTCTTCACTCAGGATCAGCAGCACGATCAAGGAC
ATGTAGATGTGATGTGAGTTGCTATCGGGGGCGTTGTACAGTGTCTGAAG
G
BO05627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 2100 | CG8230-RA | 1219..2097 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 1288..2170 | 901..19 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8945308..8945807 | 287..786 | 2500 | 100 | Plus |
| 2R | 25286936 | 2R | 8944909..8945055 | 19..165 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 8945128..8945251 | 166..289 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 8945864..8945978 | 787..901 | 560 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:21:34 has no hits.
BO05627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:03 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1215..2100 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:45 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1215..2100 | 15..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:13 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 1288..2178 | 10..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:32 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 1288..2178 | 10..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:32 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8944901..8945055 | 10..165 | 97 | <- | Plus |
| 2R | 8945128..8945250 | 166..288 | 100 | <- | Plus |
| 2R | 8945310..8945807 | 289..786 | 100 | <- | Plus |
| 2R | 8945864..8945978 | 787..901 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:13 Download gff for
BO05627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4832406..4832560 | 10..165 | 97 | <- | Plus |
| arm_2R | 4832633..4832755 | 166..288 | 100 | <- | Plus |
| arm_2R | 4832815..4833312 | 289..786 | 100 | <- | Plus |
| arm_2R | 4833369..4833483 | 787..901 | 99 | | Plus |
BO05627.5prime Sequence
885 bp (867 high quality bases) assembled on 2005-12-02
> BO05627.5prime
GAAGTTATCAGTCGACATGGGCATCAACGTCAGCAGGACGGCCGACCTGG
GGTCCAACCAGTGGCTCCAGCGCTTCGTGGGCCGCCAGCACATCGCCCAC
GATGACGAGGCCTTCTGGAACGGGCTGCTCAACTACAACATTGTGCTGCC
GGAGAACAGTCAGGACCAGCTCAACCTGGACAGCCGGCTAGAGGCGCTGT
GCCAGTCGTTCATCGGCAATAACCTGAAGACGGGCAACTTTGGCTCCCTG
GTGACCGTGTTCCTGGAGAAGACCAGCGAGCTGCTGTCGCTGTCGGACCA
GGAAAGCAACATGCACGTCTGGCAGACCTTCAACGCGCTCTTCATCATCC
GCAGCCTGGTCAAGTACATCAACGAGACGGGCTCTGAGTTCCAGCTGCTG
CAGCACTTTGAGGCTATGCCGAATGCAGAGCTGCTGCAAGCGGCATTGGA
GCAGCAGCAACAGACGCCGGCGGAGAGCGCCACCATTGCCATGGAGGCCA
CCGAACAGTCGGCGGCGGCTGCGGTTCCAGTGATTGTGGACGGATCTAAG
TTTGAGACCTTCATCGATGCCCTGGTGAACCTAATCGTCGTGATTCCCGT
CAAGGAGTTCACCTACCACCTGCACCTAGAGGCCGTTAACATGCTGATCA
CCCTGCTGTCAGTGCATCTGTTTGCCCAACAGCCCACGGACAAGTCCATC
GTGTTCCGGACGGTCTTCAAGTGTCAGCACGCAAACGTGCTGATGTCGGC
ACTGCTGCATTTTGTGGCGCGTATTGTGGAGGTGCCGCACACCATGTTTG
GGTCCAGCTCTGCTGGATCCTTTGTCTTTGGCATCGCGGAGTCGCTGCTT
TCCATCTTCACGTTCCGTAAGCAGCCAGACATACT
BO05627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 2100 | CG8230-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 74..942 | 17..885 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8946324..8947052 | 885..157 | 3645 | 100 | Minus |
| 2R | 25286936 | 2R | 8947129..8947271 | 159..17 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:43:43 has no hits.
BO05627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:04 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:46 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:48 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 72..942 | 14..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:21:02 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 72..942 | 14..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:21:02 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8946324..8947049 | 160..885 | 100 | <- | Minus |
| 2R | 8947129..8947273 | 14..159 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:48 Download gff for
BO05627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4833829..4834554 | 160..885 | 100 | <- | Minus |
| arm_2R | 4834634..4834778 | 14..159 | 99 | | Minus |
BO05627.complete Sequence
2131 bp assembled on 2008-08-14
GenBank Submission: FJ630099
> BO05627.complete
GAAGTTATCAGTCGACATGGGCATCAACGTCAGCAGGACGGCCGACCTGG
GGTCCAACCAGTGGCTCCAGCGCTTCGTGGGCCGCCAGCACATCGCCCAC
GATGACGAGGCCTTCTGGAACGGGCTGCTCAACTACAACATTGTGCTGCC
GGAGAACAGTCAGGACCAGCTCAACCTGGACAGCCGGCTAGAGGCGCTGT
GCCAGTCGTTCATCGGCAATAACCTGAAGACGGGCAACTTTGGCTCCCTG
GTGACCGTGTTCCTGGAGAAGACCAGCGAGCTGCTGTCGCTGTCGGACCA
GGAAAGCAACATGCACGTCTGGCAGACCTTCAACGCGCTCTTCATCATCC
GCAGCCTGGTCAAGTACATCAACGAGACGGGCTCTGAGTTCCAGCTGCTG
CAGCACTTTGAGGCTATGCCGAATGCAGAGCTGCTGCAAGCGGCATTGGA
GCAGCAGCAACAGACGCCGGCGGAGAGCGCCACCATTGCCATGGAGGCCA
CCGAACAGTCGGCGGCGGCTGCGGTTCCAGTGATTGTGGACGGATCTAAG
TTTGAGACCTTCATCGATGCCCTGGTGAACCTAATCGTCGTGATTCCCGT
CAAGGAGTTCACCTACCACCTGCACCTAGAGGCCGTTAACATGCTGATCA
CCCTGCTGTCAGTGCATCTGTTTGCCCAACAGCCCACGGACAAGTCCATC
GTGTTCCGGACGGTCTTCAAGTGTCAGCACGCAAACGTGCTGATGTCGGC
ACTGCTGCATTTTGTGGCGCGTATTGTGGAGGTGCCGCACACCATGTTTG
GGTCCAGCTCTGCTGGATCCTTTGTCTTTGGCATCGCGGAGTCGCTGCTT
TCCATCTTCACGTTCCGTAAGCAGCCAGACATACTGAAAGCGGGCCAAGC
AGCCGGCGGTGGAGAGCTCTCGCAGCGATTCCGTACCCACTACCCACTGG
CCAACCAGAGCCTGTTGCTGATCCTGATACTGACTAACCACTGCACGGCA
CAGGATAACGCCTATCGGACTAGCCTTTTCAGTTGCGCCGATTCAAAGGA
TTCACCAAAACAGGGAGCTGTCTCCTTCCAGATCGACTTCTCGGCGGTAT
ATGAGACATTGTGTACCATCGTTACCATCGACCAGGCCACGCTGCTGCTC
TATCTGCTGCTCCATCGCAACGAGCGCTTCTACCGGTTCGTCATGCAGCA
ACAGGACTTGGAGCAGTTGGTGATCCCCATCCTCCAGACACTGTACAACG
CCCCCGATAGCAACTCACATCACATCTACATGTCCTTGATCGTGCTGCTG
ATCCTGAGTGAAGACGAGGGCTTCAACAAGAATGTGCACACCATAATGCT
AAAAAACATCACATGGTATACGGAACGCACCATATCGGAGATATCGCTGG
GCGGCATCCTAATCCTTATCGTCATCCGCACCATACAGTACAACATGCTG
AAGATGCGCGACAAGTACTTGCACACCAATTGCCTGGCGGCGCTGGCCAA
CATGTCCGGCCACTTCCGCGCTCTACACCCTTACGTGGCACAGCGACTGG
TCTCGCTGTTCGAAACGCTCGCTCGGAAGCATACGCGCCTGGATGCGCAG
CTCAAGGAGCCGGCCGATAGCGCAGTGTTTGTGAACGTCTCGACGACCCC
GGAAGACATGCTACAAGATCTGAGCGTGCTGGAGGAGGTGTTGCGCATGG
TGCTGGAAATCCTAAACTCCTGCCTCACAAACCAGTTGGTCTACTGTCCC
AACTTGGTGTACACTCTTTTGTACAAGCGCAGCGTCTTCGAGGGCTTCCG
CAGTCACCACGCCTTCCAGGATGTCATCCAAAACATAGACATGGTTGTCG
GTTTCTTCTCCTCGCGTCTGCAGCGTGTCCAGGAGCAGAGAGGCGAGCTT
GGGGTCAATGAAGTGCTCGAGGTTATATCTAAAGGTGCCAGTCAGTGGTC
CAGCGATCGACTGAGAAAGTTCCCGGATCTTAAGTTTAAGTACGTCGAGG
AGGACGCTCCCGAGGAGTTCTTCATTCCATATGTGTGGACGTTGGTCTGC
AAGTACGGCTGCGTGCACTTCAGCTCGGAGAGCATCAAGAGCGTGACCAC
GGACATAGCCTGCGCAAGCTTTCTAGACCAT
BO05627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2100 | CG8230-PA | 1..2097 | 17..2113 | 10485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 74..2170 | 17..2113 | 10485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8945864..8947052 | 1345..157 | 5945 | 100 | Minus |
| 2R | 25286936 | 2R | 8945308..8945807 | 1845..1346 | 2500 | 100 | Minus |
| 2R | 25286936 | 2R | 8944909..8945055 | 2113..1967 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 8947129..8947271 | 159..17 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 8945128..8945251 | 1966..1843 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:04 has no hits.
BO05627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:16 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 89..2195 | 14..2122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:46 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 74..2170 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:16 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 91..2187 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:57 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 74..2170 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:57 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8945128..8945250 | 1844..1966 | 100 | <- | Minus |
| 2R | 8944907..8945055 | 1967..2115 | 98 | <- | Minus |
| 2R | 8945310..8945807 | 1346..1843 | 100 | <- | Minus |
| 2R | 8945864..8947049 | 160..1345 | 100 | <- | Minus |
| 2R | 8947129..8947271 | 17..159 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:46 Download gff for
BO05627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4832412..4832560 | 1967..2115 | 98 | <- | Minus |
| arm_2R | 4832633..4832755 | 1844..1966 | 100 | <- | Minus |
| arm_2R | 4832815..4833312 | 1346..1843 | 100 | <- | Minus |
| arm_2R | 4833369..4834554 | 160..1345 | 100 | <- | Minus |
| arm_2R | 4834634..4834776 | 17..159 | 100 | | Minus |
BO05627.pep Sequence
Translation from 16 to 2131
> BO05627.pep
MGINVSRTADLGSNQWLQRFVGRQHIAHDDEAFWNGLLNYNIVLPENSQD
QLNLDSRLEALCQSFIGNNLKTGNFGSLVTVFLEKTSELLSLSDQESNMH
VWQTFNALFIIRSLVKYINETGSEFQLLQHFEAMPNAELLQAALEQQQQT
PAESATIAMEATEQSAAAAVPVIVDGSKFETFIDALVNLIVVIPVKEFTY
HLHLEAVNMLITLLSVHLFAQQPTDKSIVFRTVFKCQHANVLMSALLHFV
ARIVEVPHTMFGSSSAGSFVFGIAESLLSIFTFRKQPDILKAGQAAGGGE
LSQRFRTHYPLANQSLLLILILTNHCTAQDNAYRTSLFSCADSKDSPKQG
AVSFQIDFSAVYETLCTIVTIDQATLLLYLLLHRNERFYRFVMQQQDLEQ
LVIPILQTLYNAPDSNSHHIYMSLIVLLILSEDEGFNKNVHTIMLKNITW
YTERTISEISLGGILILIVIRTIQYNMLKMRDKYLHTNCLAALANMSGHF
RALHPYVAQRLVSLFETLARKHTRLDAQLKEPADSAVFVNVSTTPEDMLQ
DLSVLEEVLRMVLEILNSCLTNQLVYCPNLVYTLLYKRSVFEGFRSHHAF
QDVIQNIDMVVGFFSSRLQRVQEQRGELGVNEVLEVISKGASQWSSDRLR
KFPDLKFKYVEEDAPEEFFIPYVWTLVCKYGCVHFSSESIKSVTTDIACA
SFLDH
BO05627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-PA | 699 | CG8230-PA | 1..699 | 1..699 | 3561 | 100 | Plus |
