Clone Sequence Records
BO05629.3prime Sequence
882 bp (846 high quality bases) assembled on 2005-12-02
> BO05629.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCTGCCCAAAGTCCTCTGTGAATTTGC
GCAGCTTCTTCAGATCGTCTTCGTTGACGGTCGGTTTCGTGCGGGACAAG
GACTTCAGCATGTCGCGCATGGTCACGGGCGGTTCGAAGAGCTTGTCGCT
GGGCACATCCATCCAGTTCATCTCGACGGCGCCCTGGTCGCCAGGTGAGC
ACGGAACCAGCAAATCGTTGACAATCTCCTCGTGGTTGGTGGGACTCGGA
CCGGATACCCGCTTGAAATGCGTGGCGGTCTGCACTTTCCTCACGGGTTC
CATCAGCGCATCGCGCACAACGATTGATATATCCGCGCCAGAGTAGCCCT
CGGTTTTGCCGGCCAACTCCTTGAGATCCTGCTCGGTGAGCACGTGCGTG
GTGTTGCCCAGATGGATCTTGAACATGACGAGGCGGGCATGCGCCTCCGG
CAGCGGAATGTAGATGCGCTTCTCGAATCGACGGCGAATGGCCGAGTCGA
GGACCCACGGTATGTTTGTGGCGCCGAGAACGAGAATGCCATCGGTGTCA
TTGCCCACGCCCTGCATCTGCACCAGAAACTCGGTCTTGATGCGTCGCAC
GCTGTCGTTCTCGTTGTCCGATCTCGCCGAGCACATCGAATCGATCTCGT
CAATGAAGATAATGGAGGGCTTGTGCTGGCGGGCCAGTTCGAAGAGATTC
TTGACCAGCTTCTCGGACTCGCCCAGCCACTTGGACATCAGATCCGAACT
GGACACCGAGAAGAATGTGGAGCGATTGGCCTCGGTGGCGACGGCCTTGG
CCAGATAGGATTTACCGGTACCGGGCGGGCCGAACAGCAGGATGCCCTTC
CACGGAATCCGCTTGCCAGTGAAGAGCTGCGG
BO05629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 463..1326 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 627..1490 | 882..19 | 4320 | 100 | Minus |
Vps4-RA | 2031 | CG6842-RA | 627..1490 | 882..19 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17909134..17909669 | 882..347 | 2680 | 100 | Minus |
X | 23542271 | X | 17909780..17910009 | 347..118 | 1150 | 100 | Minus |
X | 23542271 | X | 17910077..17910176 | 118..19 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:49:04 has no hits.
BO05629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:07 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 463..1329 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:51 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 463..1329 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:29 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 627..1490 | 19..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:41 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 627..1490 | 19..882 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:41 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17909134..17909669 | 347..882 | 100 | -> | Minus |
X | 17909781..17910009 | 118..346 | 100 | -> | Minus |
X | 17910078..17910176 | 19..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:29 Download gff for
BO05629.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17803167..17803702 | 347..882 | 100 | -> | Minus |
arm_X | 17803814..17804042 | 118..346 | 100 | -> | Minus |
arm_X | 17804111..17804209 | 19..117 | 100 | | Minus |
BO05629.5prime Sequence
803 bp (801 high quality bases) assembled on 2005-11-29
> BO05629.5prime
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCG
BO05629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6842-PA | 1329 | CG6842-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 164..951 | 16..803 | 3940 | 100 | Plus |
Vps4-RA | 2031 | CG6842-RA | 164..951 | 16..803 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17908808..17909458 | 153..803 | 3255 | 100 | Plus |
X | 23542271 | X | 17908577..17908713 | 16..152 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:56:06 has no hits.
BO05629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:08 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:52 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-PA | 1..787 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:38 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 155..951 | 7..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:19 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 155..951 | 7..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:19 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17908568..17908713 | 5..152 | 96 | -> | Plus |
X | 17908808..17909458 | 153..803 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:38 Download gff for
BO05629.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17802601..17802746 | 5..152 | 96 | -> | Plus |
arm_X | 17802841..17803491 | 153..803 | 100 | | Plus |
BO05629.complete Sequence
1360 bp (1360 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630101
> BO05629.complete
GAAGTTATCAGTCGACATGGCAGCCGGTACCACACTACAGAAGGCCATCG
ATCTGGTGACCAAGGCCACCGAGGAGGATCGAAATAAGAACTACGCGGAG
GCACTGCGTCTGTATGAGCACGGGGTGGAGTACTTCCTGCACACCATCAA
ATATGAGGCACAGGGCGAGAAGGCCAAGGACTCGATACGGGCCAAGTGCC
TGCAGTATTTGGACCGGGCCGAGAAGCTAAAGGAGTACCTGAAGAAGGGC
AAAAAGAAACCGATCAAGGAGGGTGGTGAGTCCAGCGCCAAGGACGACAA
GGACAAAAAGAGCGACAGCGATGACGAGGACGGCGACGATCCCGAGAAGA
AGAAGCTGCAGAGCAAGCTGGAGGACGCCATTGTCATAGAGAAGCCAAAG
GTTCAGTGGTCCGATGTCGCTGGCCTGGATGCCGCCAAGGAGGCGCTGAA
GGAGGCCGTTATCCTGCCGATTAAATTCCCGCAGCTCTTCACTGGCAAGC
GGATTCCGTGGAAGGGCATCCTGCTGTTCGGCCCGCCCGGTACCGGTAAA
TCCTATCTGGCCAAGGCCGTCGCCACCGAGGCCAATCGCTCCACATTCTT
CTCGGTGTCCAGTTCGGATCTGATGTCCAAGTGGCTGGGCGAGTCCGAGA
AGCTGGTCAAGAATCTCTTCGAACTGGCCCGCCAGCACAAGCCCTCCATT
ATCTTCATTGACGAGATCGATTCGATGTGCTCGGCGAGATCGGACAACGA
GAACGACAGCGTGCGACGCATCAAGACCGAGTTTCTGGTGCAGATGCAGG
GCGTGGGCAATGACACCGATGGCATTCTCGTTCTCGGCGCCACAAACATA
CCGTGGGTCCTCGACTCGGCCATTCGCCGTCGATTCGAGAAGCGCATCTA
CATTCCGCTGCCGGAGGCGCATGCCCGCCTCGTCATGTTCAAGATCCATC
TGGGCAACACCACGCACGTGCTCACCGAGCAGGATCTCAAGGAGTTGGCC
GGCAAAACCGAGGGCTACTCTGGCGCGGATATATCAATCGTTGTGCGCGA
TGCGCTGATGGAACCCGTGAGGAAAGTGCAGACCGCCACGCATTTCAAGC
GGGTATCCGGTCCGAGTCCCACCAACCACGAGGAGATTGTCAACGATTTG
CTGGTTCCGTGCTCACCTGGCGACCAGGGCGCCGTCGAGATGAACTGGAT
GGATGTGCCCAGCGACAAGCTCTTCGAACCGCCCGTGACCATGCGCGACA
TGCTGAAGTCCTTGTCCCGCACGAAACCGACCGTCAACGAAGACGATCTG
AAGAAGCTGCGCAAATTCACAGAGGACTTTGGGCAGGAGGGCGCAAGCTT
TCTAGACCAT
BO05629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 1329 | CG6842-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Vps4-RA | 1329 | CG6842-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-RB | 2411 | CG6842-RB | 164..1490 | 16..1342 | 6635 | 100 | Plus |
Vps4-RA | 2031 | CG6842-RA | 164..1490 | 16..1342 | 6635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17908808..17909669 | 153..1014 | 4310 | 100 | Plus |
X | 23542271 | X | 17909780..17910009 | 1014..1243 | 1150 | 100 | Plus |
X | 23542271 | X | 17908577..17908713 | 16..152 | 685 | 100 | Plus |
X | 23542271 | X | 17910077..17910176 | 1243..1342 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:25:31 has no hits.
BO05629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:16 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 1..1329 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:50 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 160..1495 | 7..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:21 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 165..1490 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:16 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6842-RA | 160..1495 | 7..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:30 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps4-RA | 165..1490 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:30 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17909781..17910009 | 1015..1243 | 100 | -> | Plus |
X | 17910078..17910176 | 1244..1344 | 98 | | Plus |
X | 17908578..17908713 | 17..152 | 100 | -> | Plus |
X | 17908808..17909669 | 153..1014 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:21 Download gff for
BO05629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17802611..17802746 | 17..152 | 100 | -> | Plus |
arm_X | 17802841..17803702 | 153..1014 | 100 | -> | Plus |
arm_X | 17803814..17804042 | 1015..1243 | 100 | -> | Plus |
arm_X | 17804111..17804209 | 1244..1344 | 98 | | Plus |
BO05629.pep Sequence
Translation from 16 to 1360
> BO05629.pep
MAAGTTLQKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQG
EKAKDSIRAKCLQYLDRAEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSD
SDDEDGDDPEKKKLQSKLEDAIVIEKPKVQWSDVAGLDAAKEALKEAVIL
PIKFPQLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEANRSTFFSVSSS
DLMSKWLGESEKLVKNLFELARQHKPSIIFIDEIDSMCSARSDNENDSVR
RIKTEFLVQMQGVGNDTDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE
AHARLVMFKIHLGNTTHVLTEQDLKELAGKTEGYSGADISIVVRDALMEP
VRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSD
KLFEPPVTMRDMLKSLSRTKPTVNEDDLKKLRKFTEDFGQEGASFLDH
BO05629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps4-PB | 442 | CG6842-PB | 1..442 | 1..442 | 2273 | 100 | Plus |
Vps4-PA | 442 | CG6842-PA | 1..442 | 1..442 | 2273 | 100 | Plus |
Kat60-PA | 572 | CG10229-PA | 244..570 | 86..439 | 640 | 41.6 | Plus |
Kat60-PB | 605 | CG10229-PB | 277..603 | 86..439 | 640 | 41.6 | Plus |
kat-60L1-PF | 605 | CG1193-PF | 235..603 | 67..439 | 627 | 39 | Plus |