Clone Sequence Records
BO05631.3prime Sequence
881 bp (748 high quality bases) assembled on 2005-12-02
> BO05631.3prime
ATGGTCTAGAAAGCTTGCATCGGAGAACTTCTCCTTGAGCTCGCGGCGCA
GGATCTTGCCGGTGGGATTCTTTGGCACCTCGTCCACAAAGATCACTCCG
CCCTCAAGCTTCTTGTAGTGGGCCACCCGTTCGGCCACGTAGGCGGAGAT
CTCCTCGGCGCTGGCTTTCTCCCCCTGACGCAGGACGACAATGGCGCGTG
GTGCCTCGCCGTTGAATTCGTGGGGAATACCAAAGACGGCCGCCTCCAGA
ATCTTGGGGTGATCACGCAGCACTGCCTCCAATTCGGCGGGTGGCACTTG
GAAACCCTTCACCTTAATCAGCTCCTTCATGCGGTCCGTGATATAGAAGA
GACCGTCCTCGTCGTAGAAGGCGACGTCGCCACTGCGCAGCCAGTTGCCC
GGATAGAAGGTGACCTGATTGGCCTCATCGTTGTTCAAATAACCGGCCAT
CACCTGGGGACCACGAACGCACAGCTCGCCAGTGGTGCGCGGACCAACGC
CCTTGGCATCGCTTCCATCCAGTGGAACGATCTTGGCCTCCGTGCTGGCC
GGCAGCACACCGGTCGAGGCGTACACCTTGTTGCCCTCCGGTGTTAGCAA
AACCACGGGAGAAGCCTCTGTCATGCCATAGCCCTGCTTGAAGACAGTGT
TCGGGAACTTGTTCAGGAAGCGCTCCACATCGTGCTGACCAATTGGGGCC
GCTCCACTCATCACCACCTTCAAGTGGGGCGCTGTTTCCTGCGTCAGCTT
GGGATGGTTAATCATAAAGAGGGCAATTGGGGGCACCAAGTTGAGGATGC
TGCCCTGGTACTTGTCCAGCGACCTCATGAAGTCATCCGGCTTAAAGCAC
GGCATGGTGGCCAGTCGGCAGCCCTGTCCCA
BO05631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9009-PA | 1794 | CG9009-RA | 929..1791 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 1525..2387 | 881..19 | 4315 | 100 | Minus |
| pdgy-RB | 3407 | CG9009-RB | 1582..2444 | 881..19 | 4315 | 100 | Minus |
| pdgy-RD | 2780 | CG9009-RD | 1325..2187 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14934633..14935272 | 19..658 | 3200 | 100 | Plus |
| X | 23542271 | X | 14935329..14935446 | 657..774 | 590 | 100 | Plus |
| X | 23542271 | X | 14935876..14935983 | 774..881 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:49:10 has no hits.
BO05631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:10 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 930..1794 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:57 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 930..1794 | 15..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:31 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 1326..2199 | 5..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:46 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 1326..2199 | 5..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:46 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14934621..14935272 | 5..658 | 99 | <- | Plus |
| X | 14935331..14935445 | 659..773 | 100 | <- | Plus |
| X | 14935876..14935982 | 774..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:31 Download gff for
BO05631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14828654..14829305 | 5..658 | 99 | <- | Plus |
| arm_X | 14829364..14829478 | 659..773 | 100 | <- | Plus |
| arm_X | 14829909..14830015 | 774..880 | 100 | | Plus |
BO05631.5prime Sequence
937 bp (789 high quality bases) assembled on 2005-12-02
> BO05631.5prime
GAAGTTATCAGTCGACATGAACCCAGCCGCTCAACTGCTGCGCATGCGCA
GCGCTACCGCATTTGGTAGCGCCGCAACGCGCTCCATCACGACGAACCGG
CGCCAGCGGACCACCAGTACCGCCAGCGCCCAGCGGGAGCGGACGCAGAG
CGTCAGCGAGACGGACAAGTTTCTGCACTACAGCCCCGAGGACGGCTACT
ACAAGACCTCGCCCTTTGACCCCGTCACCATTCCCAACGTACCGCTGCAT
GAGTACGTGTGGCGCGACTTCAAAAAGTGGGAGCGACGCACTGCAGCGGT
TTGTGTGATCACCGATCGGCAGTACACTTTCGCTCAAATGCGTGATGCCA
GCGCCGCTTTTGCCGTTCGTCTGCAGACCAAATTCAATCTCCAAAAGCCC
GACGTTTTGGCCATCTGTCTGCCGAATCTTCCCGAGTATCCCATTGCCAC
ATTGGGCGCCATTGAGGCGGGACTGACGGTGACCACAGTGAATCCCGTCT
ACACGCCGGATGAGATCGCCAGGCAATTGACCTTTAGCGGAGCCAAGTTC
CTGGTGGGAACGGTATCCGGATTTGCCACACTAAGCCAGGCCAGCAAACT
GGTGGGCAGGCAAATACCCATCGCCGTGGTGCGTACCAGTGCCGAGGAGG
CCCTGCCCGAGGGTGCCATCGATTTCAGCGAGCTGACGAGCACCCAGAAT
GTGCGTTACGAGGATCTGAAAGCGCCCAAAGAAGCCTCCGCCGACGATAT
GGTCTTCCTGCCCTTCTCCTCCGGCACCACTGGTCTGCCCAAGGGTGTGA
TGCTATCGCACAACAACATCACTAGCAATTGCGAGCAGGTGCAGGCCTCC
CTGCCACTGGATCTCATGGGTCCGCAGAACACGTTGCCGGGCGTCCTGCC
CTTCTTTCACATCTACGGCCTCACCGTGGTGATGCTC
BO05631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9009-PA | 1794 | CG9009-RA | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 596..1517 | 16..937 | 4610 | 100 | Plus |
| pdgy-RB | 3407 | CG9009-RB | 653..1574 | 16..937 | 4610 | 100 | Plus |
| pdgy-RD | 2780 | CG9009-RD | 396..1317 | 16..937 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14935991..14936419 | 937..509 | 2145 | 100 | Minus |
| X | 23542271 | X | 14950316..14950600 | 300..16 | 1425 | 100 | Minus |
| X | 23542271 | X | 14946271..14946482 | 509..298 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:30:42 has no hits.
BO05631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:11 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:50:59 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-PA | 1..921 | 17..937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:02 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..1317 | 9..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:18 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..1317 | 9..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:18 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14935991..14936418 | 510..937 | 100 | <- | Minus |
| X | 14946271..14946481 | 299..509 | 100 | <- | Minus |
| X | 14950318..14950604 | 9..298 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:02 Download gff for
BO05631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14830024..14830451 | 510..937 | 100 | <- | Minus |
| arm_X | 14840304..14840514 | 299..509 | 100 | <- | Minus |
| arm_X | 14844351..14844637 | 9..298 | 98 | | Minus |
BO05631.complete Sequence
1825 bp assembled on 2007-10-05
GenBank Submission: FJ630102
> BO05631.complete
GAAGTTATCAGTCGACATGAACCCAGCCGCTCAACTGCTGCGCATGCGCA
GCGCTACCGCATTTGGTAGCGCCGCAACGCGCTCCATCACGACGAACCGG
CGCCAGCGGACCACCAGTACCGCCAGCGCCCAGCGGGAGCGGACGCAGAG
CGTCAGCGAGACGGACAAGTTTCTGCACTACAGCCCCGAGGACGGCTACT
ACAAGACCTCGCCCTTTGACCCCGTCACCATTCCCAACGTACCGCTGCAT
GAGTACGTGTGGCGCGACTTCAAAAAGTGGGAGCGACGCACTGCAGCGGT
TTGTGTGATCACCGATCGGCAGTACACTTTCGCTCAAATGCGTGATGCCA
GCGCCGCTTTTGCCGTTCGTCTGCAGACCAAATTCAATCTCCAAAAGCCC
GACGTTTTGGCCATCTGTCTGCCGAATCTTCCCGAGTATCCCATTGCCAC
ATTGGGCGCCATTGAGGCGGGACTGACGGTGACCACAGTGAATCCCGTCT
ACACGCCGGATGAGATCGCCAGGCAATTGACCTTTAGCGGAGCCAAGTTC
CTGGTGGGAACGGTATCCGGATTTGCCACACTAAGCCAGGCCAGCAAACT
GGTGGGCAGGCAAATACCCATCGCCGTGGTGCGTACCAGTGCCGAGGAGG
CCCTGCCCGAGGGTGCCATCGATTTCAGCGAGCTGACGAGCACCCAGAAT
GTGCGTTACGAGGATCTGAAAGCGCCCAAAGAAGCCTCCGCCGACGATAT
GGTCTTCCTGCCCTTCTCCTCCGGCACCACTGGTCTGCCCAAGGGTGTGA
TGCTATCGCACAACAACATCACTAGCAATTGCGAGCAGGTGCAGGCCTCC
CTGCCACTGGATCTCATGGGTCCGCAGAACACGTTGCCGGGCGTCCTGCC
CTTCTTTCACATCTACGGCCTCACCGTGGTGATGCTCTCGAAACTGGGAC
AGGGCTGCCGACTGGCCACCATGCCGTGCTTTAAGCCGGATGACTTCATG
AGGTCGCTGGACAAGTACCAGGGCAGCATCCTCAACTTGGTGCCCCCAAT
TGCCCTCTTTATGATTAACCATCCCAAGCTGACGCAGGAAACAGCGCCCC
ACTTGAAGGTGGTGATGAGTGGAGCGGCCCCAATTGGTCAGCACGATGTG
GAGCGCTTCCTGAACAAGTTCCCGAACACTGTCTTCAAGCAGGGCTATGG
CATGACAGAGGCTTCTCCCGTGGTTTTGCTAACACCGGAGGGCAACAAGG
TGTACGCCTCGACCGGTGTGCTGCCGGCCAGCACGGAGGCCAAGATCGTT
CCACTGGATGGAAGCGATGCCAAGGGCGTTGGTCCGCGCACCACTGGCGA
GCTGTGCGTTCGTGGTCCCCAGGTGATGGCCGGTTATTTGAACAACGATG
AGGCCAATCAGGTCACCTTCTATCCGGGCAACTGGCTGCGCAGTGGCGAC
GTCGCCTTCTACGACGAGGACGGTCTCTTCTATATCACGGACCGCATGAA
GGAGCTGATTAAGGTGAAGGGTTTCCAAGTGCCACCCGCCGAATTGGAGG
CAGTGCTGCGTGATCACCCCAAGATTCTGGAGGCGGCCGTCTTTGGTATT
CCCCACGAATTCAACGGCGAGGCACCACGCGCCATTGTCGTCCTGCGTCA
GGGGGAGAAAGCCAGCGCCGAGGAGATCTCCGCCTACGTGGCCGAACGGG
TGGCCCACTACAAGAAGCTTGAGGGCGGAGTGATCTTTGTGGACGAGGTG
CCAAAGAATCCCACCGGCAAGATCCTGCGCCGCGAGCTCAAGGAGAAGTT
CTCCGATGCAAGCTTTCTAGACCAT
BO05631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 1794 | CG9009-PC | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| pdgy-RB | 1794 | CG9009-PB | 1..1791 | 17..1807 | 8955 | 100 | Plus |
| pdgy-RD | 1794 | CG9009-PD | 1..1791 | 17..1807 | 8955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 596..2387 | 16..1807 | 8960 | 100 | Plus |
| pdgy-RB | 3407 | CG9009-RB | 653..2444 | 16..1807 | 8960 | 100 | Plus |
| pdgy-RD | 2780 | CG9009-RD | 396..2187 | 16..1807 | 8960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14934633..14935272 | 1807..1168 | 3200 | 100 | Minus |
| X | 23542271 | X | 14935876..14936419 | 1052..509 | 2720 | 100 | Minus |
| X | 23542271 | X | 14950316..14950600 | 300..16 | 1425 | 100 | Minus |
| X | 23542271 | X | 14946271..14946482 | 509..298 | 1060 | 100 | Minus |
| X | 23542271 | X | 14935329..14935446 | 1169..1052 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:05:44 has no hits.
BO05631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:22 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 1..1794 | 17..1811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:34 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 140..1930 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:52 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 397..2187 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:22 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 135..1942 | 9..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:46 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 397..2187 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:46 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14946271..14946481 | 299..509 | 100 | <- | Minus |
| X | 14934631..14935272 | 1168..1809 | 99 | <- | Minus |
| X | 14935331..14935445 | 1053..1167 | 100 | <- | Minus |
| X | 14935876..14936418 | 510..1052 | 100 | <- | Minus |
| X | 14950318..14950599 | 17..298 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:52 Download gff for
BO05631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14844351..14844632 | 17..298 | 100 | | Minus |
| arm_X | 14828664..14829305 | 1168..1809 | 99 | <- | Minus |
| arm_X | 14829364..14829478 | 1053..1167 | 100 | <- | Minus |
| arm_X | 14829909..14830451 | 510..1052 | 100 | <- | Minus |
| arm_X | 14840304..14840514 | 299..509 | 100 | <- | Minus |
BO05631.pep Sequence
Translation from 16 to 1825
> BO05631.pep
MNPAAQLLRMRSATAFGSAATRSITTNRRQRTTSTASAQRERTQSVSETD
KFLHYSPEDGYYKTSPFDPVTIPNVPLHEYVWRDFKKWERRTAAVCVITD
RQYTFAQMRDASAAFAVRLQTKFNLQKPDVLAICLPNLPEYPIATLGAIE
AGLTVTTVNPVYTPDEIARQLTFSGAKFLVGTVSGFATLSQASKLVGRQI
PIAVVRTSAEEALPEGAIDFSELTSTQNVRYEDLKAPKEASADDMVFLPF
SSGTTGLPKGVMLSHNNITSNCEQVQASLPLDLMGPQNTLPGVLPFFHIY
GLTVVMLSKLGQGCRLATMPCFKPDDFMRSLDKYQGSILNLVPPIALFMI
NHPKLTQETAPHLKVVMSGAAPIGQHDVERFLNKFPNTVFKQGYGMTEAS
PVVLLTPEGNKVYASTGVLPASTEAKIVPLDGSDAKGVGPRTTGELCVRG
PQVMAGYLNNDEANQVTFYPGNWLRSGDVAFYDEDGLFYITDRMKELIKV
KGFQVPPAELEAVLRDHPKILEAAVFGIPHEFNGEAPRAIVVLRQGEKAS
AEEISAYVAERVAHYKKLEGGVIFVDEVPKNPTGKILRRELKEKFSDASF
LDH
BO05631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-PC | 597 | CG9009-PC | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PB | 597 | CG9009-PB | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PD | 597 | CG9009-PD | 1..597 | 1..597 | 3080 | 100 | Plus |
| pdgy-PA | 597 | CG9009-PA | 1..597 | 1..597 | 3080 | 100 | Plus |
| CG6178-PA | 544 | CG6178-PA | 27..535 | 77..593 | 705 | 32.3 | Plus |
