Clone Sequence Records
BO05632.3prime Sequence
703 bp (680 high quality bases) assembled on 2005-12-02
> BO05632.3prime
ATGGTCTAGAAAGCTTGCAGCCCTAACGTTGTTTTCTATCCAGTTCAGAT
ACGCTTCAACCCTTGTGTACACGCCGGGCCATCCTTTTAGGCCACAGGGC
GTGGGTCCGTAGGAGACCACACCAGCAATGTAGTAGTTTGAGTTTCCATT
GGAGTAGTCCTCGAGCAGAAGGGGGCCACCCGAGTCCCCGCGACAGGAAT
CAACCCCCTCAACTCCGCCGGCGCACATCTGTTTGGTGGTGACAGTCCTT
CTTTGGGTGGCGTATCTTTGGTTGCATTCGGACGTCGGTACCGTATCCAA
CTCAGCCTTCAGCTTGATATTGGACGTAAAATTTGTCTCCGTGCGACCCC
ACCCTGCCACCACCACCTTTCGGCCAAGGAATATATTGTTGTGCTGGGAC
GCTAAAGTGGGCAGACATACTGGTAATATGAAGTCGCTGTACTGAACCTC
GTCCCGCAATCGCAGCAACGCAATGTCATTTAGCTGGTCCCGTGAGTTTC
CCGGGTACTGCGGGTGCGGAATACGCTCCTCAACAGGGTAGTCTACGTAC
GGTTCGTTGCAGTCCCGTCGTCCGTTTTTACCGACTGTGCAATCCGGATT
GGTGCTCGCATCCCACTCACCCAGGCGTACTCCCGTCAGCTCCCAATCAC
TGGGAATAGCCGAGACGCAGTGTGCCGCCGTCAGAACGTAACGATGGTTG
ATT
BO05632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1102-PA | 1173 | CG1102-RA | 486..1170 | 703..19 | 3425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RC | 1495 | CG1102-RC | 592..1276 | 703..19 | 3425 | 100 | Minus |
MP1-RA | 1468 | CG1102-RA | 565..1249 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308932..4309616 | 703..19 | 3425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:45:46 has no hits.
BO05632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:12 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 486..1173 | 15..703 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:01 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 486..1173 | 15..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:06 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 565..1256 | 11..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:41:33 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 565..1256 | 11..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:41:33 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4308932..4309613 | 22..703 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:06 Download gff for
BO05632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 134654..135335 | 22..703 | 100 | -> | Minus |
BO05632.5prime Sequence
794 bp (655 high quality bases) assembled on 2005-11-29
> BO05632.5prime
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACTTTGCGTTGCTGCAATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGC
BO05632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1102-PA | 1173 | CG1102-RA | 1..778 | 17..794 | 3840 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1468 | CG1102-RA | 79..857 | 16..794 | 3865 | 99.7 | Plus |
MP1-RC | 1495 | CG1102-RC | 340..884 | 250..794 | 2695 | 99.6 | Plus |
MP1-RC | 1495 | CG1102-RC | 79..313 | 16..250 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308895..4309224 | 465..794 | 1620 | 99.4 | Plus |
3R | 32079331 | 3R | 4308620..4308833 | 251..464 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 4308262..4308427 | 85..250 | 830 | 100 | Plus |
3R | 32079331 | 3R | 4307986..4308056 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:49:56 has no hits.
BO05632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:13 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 1..778 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:02 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1102-PA | 1..778 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:33 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..857 | 16..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:14:57 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..857 | 16..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:14:57 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4308895..4309224 | 465..794 | 99 | | Plus |
3R | 4307986..4308056 | 16..86 | 100 | -> | Plus |
3R | 4308264..4308427 | 87..250 | 100 | -> | Plus |
3R | 4308620..4308833 | 251..464 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:33 Download gff for
BO05632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 133708..133778 | 16..86 | 100 | -> | Plus |
arm_3R | 133986..134149 | 87..250 | 100 | -> | Plus |
arm_3R | 134342..134555 | 251..464 | 100 | -> | Plus |
arm_3R | 134617..134946 | 465..794 | 99 | | Plus |
BO05632.complete Sequence
1204 bp (1204 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630103
> BO05632.complete
GAAGTTATCAGTCGACATGGAACCGCACTTTTTTTTCACCGTACTGTGGA
TGCTATTGATGGGAACAAGCAGCACTTACGCACAAGAAATCTTTGGGTAT
TGTAGAACGCCTGATGAGAACAGCGGCACCTGCATAAACCTCCGGGAATG
TGGATACCTATTCGAACTGCTTCAAAGCGAAGAGGTTACGGAACAGGACC
GTCGATTTCTGCAAGCCAGCCAATGTGGCTACCGGAATGGACAAGTGCTT
ATTTGCTGTGCAAACAGCCGAATGCGAAACCAGCAACCTCAGTGGGGAAA
TCATCCTCAACCTACTCAGACCACTAAGCCTACAAAACGCTCTGGGACCA
AACTGTTACCAATGGCGCCCAATTGCGGTGAAAACTTTGGAGACCGAGTG
GTGGGTGGTAACGAGACGACAAAGAGGGAGTTTCCTTGGATGGCCCTAAT
AGAGTACACGAAGCCCGGTAACGTGAAAGGTCACCACTGCGGCGGATCTC
TAATCAACCATCGTTACGTTCTGACGGCGGCACACTGCGTCTCGGCTATT
CCCAGTGATTGGGAGCTGACGGGAGTACGCCTGGGTGAGTGGGATGCGAG
CACCAATCCGGATTGCACAGTCGGTAAAAACGGACGACGGGACTGCAACG
AACCGTACGTAGACTACCCTGTTGAGGAGCGTATTCCGCACCCGCAGTAC
CCGGGAAACTCACGGGACCAGCTAAATGACATTGCGTTGCTGCGATTGCG
GGACGAGGTTCAGTACAGCGACTTCATATTACCAGTATGTCTGCCCACTT
TAGCGTCCCAGCACAACAATATATTCCTTGGCCGAAAGGTGGTGGTGGCA
GGGTGGGGTCGCACGGAGACAAATTTTACGTCCAATATCAAGCTGAAGGC
TGAGTTGGATACGGTACCGACGTCCGAATGCAACCAAAGATACGCCACCC
AAAGAAGGACTGTCACCACCAAACAGATGTGCGCCGGCGGAGTTGAGGGG
GTTGATTCCTGTCGCGGGGACTCGGGTGGCCCCCTTCTGCTCGAGGACTA
CTCCAATGGAAACTCAAACTACTACATTGCTGGTGTGGTCTCCTACGGAC
CCACGCCCTGTGGCCTAAAAGGATGGCCCGGCGTGTACACAAGGGTTGAA
GCGTATCTGAACTGGATAGAAAACAACGTTAGGGCTGCAAGCTTTCTAGA
CCAT
BO05632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1173 | CG1102-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
MP1-RC | 1200 | CG1102-PC | 261..1197 | 250..1186 | 4685 | 100 | Plus |
MP1-RC | 1200 | CG1102-PC | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-RA | 1468 | CG1102-RA | 79..1249 | 16..1186 | 5855 | 100 | Plus |
MP1-RC | 1495 | CG1102-RC | 340..1276 | 250..1186 | 4685 | 100 | Plus |
MP1-RC | 1495 | CG1102-RC | 79..313 | 16..250 | 1175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4308895..4309616 | 465..1186 | 3610 | 100 | Plus |
3R | 32079331 | 3R | 4308620..4308833 | 251..464 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 4308262..4308427 | 85..250 | 830 | 100 | Plus |
3R | 32079331 | 3R | 4307986..4308056 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:09:30 has no hits.
BO05632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:17 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 1..1173 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:52 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..1256 | 16..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:55 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 80..1249 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:17 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 79..1256 | 16..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:07 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MP1-RA | 80..1249 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:07 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4307987..4308056 | 17..86 | 100 | -> | Plus |
3R | 4308264..4308427 | 87..250 | 100 | -> | Plus |
3R | 4308620..4308833 | 251..464 | 100 | -> | Plus |
3R | 4308895..4309616 | 465..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:55 Download gff for
BO05632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 133709..133778 | 17..86 | 100 | -> | Plus |
arm_3R | 133986..134149 | 87..250 | 100 | -> | Plus |
arm_3R | 134342..134555 | 251..464 | 100 | -> | Plus |
arm_3R | 134617..135338 | 465..1188 | 99 | | Plus |
BO05632.pep Sequence
Translation from 16 to 1204
> BO05632.pep
MEPHFFFTVLWMLLMGTSSTYAQEIFGYCRTPDENSGTCINLRECGYLFE
LLQSEEVTEQDRRFLQASQCGYRNGQVLICCANSRMRNQQPQWGNHPQPT
QTTKPTKRSGTKLLPMAPNCGENFGDRVVGGNETTKREFPWMALIEYTKP
GNVKGHHCGGSLINHRYVLTAAHCVSAIPSDWELTGVRLGEWDASTNPDC
TVGKNGRRDCNEPYVDYPVEERIPHPQYPGNSRDQLNDIALLRLRDEVQY
SDFILPVCLPTLASQHNNIFLGRKVVVAGWGRTETNFTSNIKLKAELDTV
PTSECNQRYATQRRTVTTKQMCAGGVEGVDSCRGDSGGPLLLEDYSNGNS
NYYIAGVVSYGPTPCGLKGWPGVYTRVEAYLNWIENNVRAASFLDH
BO05632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MP1-PA | 390 | CG1102-PA | 1..390 | 1..390 | 2149 | 100 | Plus |
MP1-PC | 399 | CG1102-PC | 1..399 | 1..390 | 2129 | 97.7 | Plus |
ea-PA | 392 | CG4920-PA | 34..392 | 26..390 | 1000 | 51 | Plus |
ea-PB | 261 | CG4920-PB | 7..261 | 138..390 | 807 | 57.3 | Plus |
SPE-PA | 400 | CG16705-PA | 25..398 | 19..388 | 770 | 43.5 | Plus |