Clone Sequence Records
BO05633.3prime Sequence
881 bp (837 high quality bases) assembled on 2005-12-02
> BO05633.3prime
ATGGTCTAGAAAGCTTGCTATGTAAAGTGAGCCATCCGCTGGCCCCAAAT
AATGCATCGAGATGAGCAGGACATCGATGATGGTCCAGACGCCGAGGCCG
CCAAAGCTGAACAGCTTTCCAATCCCTTCCTGCCAGTGGCCCAAGTAGAA
TCGATCGGCTCCAAAGCCCCCTAGCGTGAGGCTAATCAGCAGGGCTGTGC
TCCACCGATAGCCCTGCGTCCAGTTGCATCGCAGGTTGCGGGTAAAGGAT
CGATTGCCGAGGCAGAGCACATCATGGTGCACGGTGCAGTTGGTACGGAA
TAGCTTATCCGTCGCCGAGTTGCAACTGGAGCGCTGGCCACAGCTCTGTT
GCCACATTTCCGTTTGGTAGCAGTATCGGCAATTCATTTGTCGCTGGAAA
CTCCGTTCGCCCAGGCACTGGACATTGTTGATCACCTCGCAGGTTACATT
CAAGTCCCGGCCGTAGATGCATCCATGATTGTAGTTGCAACGGATGCAGG
GAAACTGCAGGCGATCACAGGGCGTTTCCTTATCGTACGGGCATAGCATG
TTGTTGTTCCCATTGCTGCTACTGCTACTGCTGCTGCTGCTGTAGGCGGT
TATGTTGTCCAGGAGTCCACCGGCACCTCCTCCACTCTTGGCCACCATGC
TGGACACCAGGGGCGGCACATACACCTCGTTATCGTTGGCATTTCCATTG
CCATTGCTCGCATTGCTGTTATCCTTGTGATCGCCTTTTGAGTCCGATAA
GTCCATCTGGTTGCCACCGCTGGCCGTTTCGCTGTTCCTGATCCCCGTCA
GCACGAAGATCATGATCAGGACAATGGCCGATCGCATGTTGACCACAATG
CACTGTCGTTGGAGCCTCCTGTCGACTGATA
BO05633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12127-PA | 855 | amx-RA | 3..852 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 67..916 | 868..19 | 4250 | 100 | Minus |
| amx-RA | 1422 | CG12127-RA | 278..1127 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246210..9247059 | 19..868 | 4250 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 02:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 607..548 | 120 | 66.7 | Minus |
BO05633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:14 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-PA | 1..855 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:03 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12127-PA | 1..855 | 18..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:30 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 278..1133 | 10..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:22 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 278..1133 | 10..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:22 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246204..9247059 | 10..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:30 Download gff for
BO05633.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140237..9141092 | 10..868 | 99 | | Plus |
BO05633.5prime Sequence
884 bp (848 high quality bases) assembled on 2005-11-29
> BO05633.5prime
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTTGGGCCAGCG
GATGGCTCACTTTACATAGCAAGCTTTCTAGACC
BO05633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12127-PA | 855 | amx-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 65..916 | 17..868 | 4245 | 99.9 | Plus |
| amx-RA | 1422 | CG12127-RA | 276..1127 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246210..9247061 | 868..17 | 4245 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 04:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 280..339 | 120 | 66.7 | Plus |
BO05633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:15 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-PA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:05 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12127-PA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:43 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1133 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:27 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1133 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:27 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246204..9247061 | 17..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:43 Download gff for
BO05633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140237..9141094 | 17..877 | 99 | | Minus |
BO05633.complete Sequence
886 bp (886 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630104
> BO05633.complete
GAAGTTATCAGTCGACATGAGGCTCCAACGACAGTGCATTGTGGTCAACA
TGCGATCGGCCATTGTCCTGATCATGATCTTCGTGCTGACGGGGATCAGG
AACAGCGAAACGGCCAGCGGTGGCAACCAGATGGACTTATCGGACTCAAA
AGGCGATCACAAGGATAACAGCAATGCGAGCAATGGCAATGGAAATGCCA
ACGATAACGAGGTGTATGTGCCGCCCCTGGTGTCCAGCATGGTGGCCAAG
AGTGGAGGAGGTGCCGGTGGACTCCTGGACAACATAACCGCCTACAGCAG
CAGCAGCAGTAGCAGTAGCAGCAATGGGAACAACAACATGCTATGCCCGT
ACGATAAGGAAACGCCCTGTGATCGCCTGCAGTTTCCCTGCATCCGTTGC
AACTACAATCATGGATGCATCTACGGCCGGGACTTGAATGTAACCTGCGA
GGTGATCAACAATGTCCAGTGCCTGGGCGAACGGAGTTTCCAGCGACAAA
TGAATTGCCGATACTGCTACCAAACGGAAATGTGGCAACAGAGCTGTGGC
CAGCGCTCCAGTTGCAACTCGGCGACGGATAAGCTATTCCGTACCAACTG
CACCGTGCACCATGATGTGCTCTGCCTCGGCAATCGATCCTTTACCCGCA
ACCTGCGATGCAACTGGACGCAGGGCTATCGGTGGAGCACAGCCCTGCTG
ATTAGCCTCACGCTAGGGGGCTTTGGAGCCGATCGATTCTACTTGGGCCA
CTGGCAGGAAGGGATTGGAAAGCTGTTCAGCTTTGGCGGCCTCGGCGTCT
GGACCATCATCGATGTCCTGCTCATCTCGATGCATTATTTGGGGCCAGCG
GATGGCTCACTTTACATAGCAAGCTTTCTAGACCAT
BO05633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 855 | CG12127-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
| amx-RA | 855 | CG12127-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-RB | 1211 | CG12127-RB | 65..916 | 17..868 | 4260 | 100 | Plus |
| amx-RA | 1422 | CG12127-RA | 276..1127 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9246210..9247061 | 868..17 | 4260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2477 | 280..339 | 120 | 66.7 | Plus |
BO05633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:02 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:31 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1133 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:33 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1127 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:02 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1133 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:22 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amx-RA | 276..1127 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:22 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9246208..9247061 | 17..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:33 Download gff for
BO05633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9140241..9141094 | 17..870 | 99 | | Minus |
BO05633.pep Sequence
Translation from 16 to 886
> BO05633.pep
MRLQRQCIVVNMRSAIVLIMIFVLTGIRNSETASGGNQMDLSDSKGDHKD
NSNASNGNGNANDNEVYVPPLVSSMVAKSGGGAGGLLDNITAYSSSSSSS
SSNGNNNMLCPYDKETPCDRLQFPCIRCNYNHGCIYGRDLNVTCEVINNV
QCLGERSFQRQMNCRYCYQTEMWQQSCGQRSSCNSATDKLFRTNCTVHHD
VLCLGNRSFTRNLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGI
GKLFSFGGLGVWTIIDVLLISMHYLGPADGSLYIASFLDH
BO05633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amx-PB | 284 | CG12127-PB | 1..284 | 1..284 | 1543 | 100 | Plus |
| amx-PA | 284 | CG12127-PA | 1..284 | 1..284 | 1543 | 100 | Plus |
| CG10795-PA | 178 | CG10795-PA | 59..156 | 192..287 | 219 | 42.9 | Plus |
| CG11103-PB | 172 | CG11103-PB | 79..166 | 195..281 | 184 | 45.5 | Plus |
