Clone Sequence Records
BO05635.3prime Sequence
903 bp (792 high quality bases) assembled on 2005-12-02
> BO05635.3prime
ATGGTCTAGAAAGCTTGCTTCCTCCTTGTTCTCGGCAGCCGGAACTTCCC
AGTAGTGCTCGTCCTGGTGATGTTCGTCCTTCTTCAGGTTCCGGAAGTTG
GTGTACTTCAAAACGGCACCTGTCAAAATACCACCTCCGATGGCAATGAG
CAGTGTGACAGCGATGCCAAACAATTGGTAGCCCGCCTGCGAAGTAGCGT
TCCGGCCAAGACCGCCCATGATTTTGGTCTCGGTTCCGTTGGTGCCCACC
ATGGCCGGGAAAATGTCCTGCAGCTCGGATTGGTACTCGCCCACGGTGGC
CATCGAGGCGTAAATGGCGGAGGCAATGGCCGAAATCAGGGCAGGCATTC
CGTGCAGGTTGTGCACGCCACAGGTGTCGTGCAGCCTCAGATTGGCCGTC
ATCCAGGGTGTTAAATAGCGATAGCCGAGCACCGAGACCGTGCCGGCGAT
AATGCCAATTAAGACAGCTCCGTGGGCGCCGAGCAGCAAGTTGCACACCG
TGCCCACGGCAACTCCGCCGGCGAGGGTCGAGTTCTGCACGTGCACCATG
TCCAATTTATTCTCGTGGCTGACAAGCGCGGATACAACGAAGGTGGTCAC
TGTTGCCGCGGCTAATGACAGGAACGTGTTCAAAATGGCCCGCTCGCCGC
CGGCTCCGTCGGCCAGAACGGAGTTAAAGCTGGGCCAGTACACCCACAGG
AAGGTGGTGCCGATCATGGCGAAGATGTCCGACGTATAGCTGGCGCCCTC
TAGCTTTCCCGTTTCGTTCTGGTCGCTGGCGGGTCTCAGCATCAGGGCAA
CAGCCAGTCCAAAGTAGGCTCCAAAAGCATGGACAGTGATAGAGCCGCCG
CAGTCGCAGATACTGAACACATGAAGAGCCAGATACTCATTGGCCGCGAA
AAG
BO05635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7499-PA | 1350 | Rh50-RA | 463..1347 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 789..1673 | 903..19 | 4425 | 100 | Minus |
Rh50-RB | 2773 | CG7499-RB | 789..1673 | 903..19 | 4425 | 100 | Minus |
Rh50-RA | 1836 | CG7499-RA | 789..1673 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4913695..4913956 | 861..600 | 1310 | 100 | Minus |
3L | 28110227 | 3L | 4918320..4918515 | 408..213 | 980 | 100 | Minus |
3L | 28110227 | 3L | 4917454..4917647 | 602..409 | 970 | 100 | Minus |
3L | 28110227 | 3L | 4918755..4918859 | 123..19 | 525 | 100 | Minus |
3L | 28110227 | 3L | 4918596..4918691 | 213..118 | 480 | 100 | Minus |
3L | 28110227 | 3L | 4913578..4913619 | 903..862 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:50:29 has no hits.
BO05635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:18 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-PA | 463..1350 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:08 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7499-PA | 463..1350 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:35 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 789..1678 | 11..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:05 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 789..1678 | 11..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:05 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4913578..4913619 | 862..903 | 100 | -> | Minus |
3L | 4913695..4913956 | 600..861 | 100 | -> | Minus |
3L | 4917457..4917647 | 409..599 | 100 | -> | Minus |
3L | 4918320..4918514 | 214..408 | 100 | -> | Minus |
3L | 4918596..4918689 | 120..213 | 100 | -> | Minus |
3L | 4918759..4918864 | 11..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:35 Download gff for
BO05635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4913578..4913619 | 862..903 | 100 | -> | Minus |
arm_3L | 4913695..4913956 | 600..861 | 100 | -> | Minus |
arm_3L | 4917457..4917647 | 409..599 | 100 | -> | Minus |
arm_3L | 4918320..4918514 | 214..408 | 100 | -> | Minus |
arm_3L | 4918596..4918689 | 120..213 | 100 | -> | Minus |
arm_3L | 4918759..4918864 | 11..119 | 96 | | Minus |
BO05635.5prime Sequence
820 bp (815 high quality bases) assembled on 2005-11-29
> BO05635.5prime
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAG
BO05635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7499-PA | 1350 | Rh50-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 326..1130 | 16..820 | 4025 | 100 | Plus |
Rh50-RB | 2773 | CG7499-RB | 326..1130 | 16..820 | 4025 | 100 | Plus |
Rh50-RA | 1836 | CG7499-RA | 326..1130 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4913695..4913956 | 521..782 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4910693..4910862 | 16..185 | 850 | 100 | Plus |
3L | 28110227 | 3L | 4912672..4912840 | 186..354 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4913451..4913619 | 352..520 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4917454..4917494 | 780..820 | 205 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 452..508 | 114 | 66.7 | Plus |
BO05635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:19 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:10 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7499-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:20 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 326..1130 | 16..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:59 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 326..1130 | 16..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:59 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4910693..4910862 | 16..185 | 100 | -> | Plus |
3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
3L | 4917457..4917494 | 783..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:20 Download gff for
BO05635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4910693..4910862 | 16..185 | 100 | -> | Plus |
arm_3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
arm_3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
arm_3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
arm_3L | 4917457..4917494 | 783..820 | 100 | | Plus |
BO05635.complete Sequence
1381 bp (1381 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630105
> BO05635.complete
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAAC
TCGACCCTCGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCT
CGGCGCCCACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGG
TGCTCGGCTATCGCTATTTAACACCCTGGATGACGGCCAATCTGAGGCTG
CACGACACCTGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGATTTC
GGCCATTGCCTCCGCCATTTACGCCTCGATGGCCACCGTGGGCGAGTACC
AATCCGAGCTGCAGGACATTTTCCCGGCCATGGTGGGCACCAACGGAACC
GAGACCAAAATCATGGGCGGTCTTGGCCGGAACGCTACTTCGCAGGCGGG
CTACCAATTGTTTGGCATCGCTGTCACACTGCTCATTGCCATCGGAGGTG
GTATTTTGACAGGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAG
AAGGACGAACATCACCAGGACGAGCACTACTGGGAAGTTCCGGCTGCCGA
GAACAAGGAGGAAGCAAGCTTTCTAGACCAT
BO05635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1383 | CG7499-PC | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Rh50-RB | 1383 | CG7499-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Rh50-RA | 1350 | CG7499-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-RC | 1974 | CG7499-RC | 326..1673 | 16..1363 | 6740 | 100 | Plus |
Rh50-RB | 2773 | CG7499-RB | 326..1673 | 16..1363 | 6740 | 100 | Plus |
Rh50-RA | 1836 | CG7499-RA | 326..1673 | 16..1363 | 6740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4913695..4913956 | 521..782 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4918320..4918515 | 974..1169 | 980 | 100 | Plus |
3L | 28110227 | 3L | 4917454..4917647 | 780..973 | 970 | 100 | Plus |
3L | 28110227 | 3L | 4910693..4910862 | 16..185 | 850 | 100 | Plus |
3L | 28110227 | 3L | 4912672..4912840 | 186..354 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4913451..4913619 | 352..520 | 845 | 100 | Plus |
3L | 28110227 | 3L | 4918755..4918859 | 1259..1363 | 525 | 100 | Plus |
3L | 28110227 | 3L | 4918596..4918691 | 1169..1264 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 264..320 | 452..508 | 114 | 66.7 | Plus |
BO05635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:03 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 1..1350 | 17..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:33 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 308..1660 | 16..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:04 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 327..1673 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:03 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 308..1660 | 16..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:59 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rh50-RA | 327..1673 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:59 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4917457..4917647 | 783..973 | 100 | -> | Plus |
3L | 4918320..4918514 | 974..1168 | 100 | -> | Plus |
3L | 4918596..4918689 | 1169..1262 | 100 | -> | Plus |
3L | 4918759..4918859 | 1263..1365 | 98 | | Plus |
3L | 4910694..4910862 | 17..185 | 100 | -> | Plus |
3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:04 Download gff for
BO05635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4913695..4913956 | 521..782 | 100 | -> | Plus |
arm_3L | 4910694..4910862 | 17..185 | 100 | -> | Plus |
arm_3L | 4912672..4912840 | 186..354 | 100 | -> | Plus |
arm_3L | 4913454..4913619 | 355..520 | 100 | -> | Plus |
arm_3L | 4917457..4917647 | 783..973 | 100 | -> | Plus |
arm_3L | 4918320..4918514 | 974..1168 | 100 | -> | Plus |
arm_3L | 4918596..4918689 | 1169..1262 | 100 | -> | Plus |
arm_3L | 4918759..4918859 | 1263..1365 | 98 | | Plus |
BO05635.pep Sequence
Translation from 16 to 1381
> BO05635.pep
MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE
HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL
MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV
FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN
ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS
LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA
VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA
IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG
IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEEA
SFLDH
BO05635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rh50-PC | 460 | CG7499-PC | 1..449 | 1..449 | 2295 | 100 | Plus |
Rh50-PB | 460 | CG7499-PB | 1..449 | 1..449 | 2295 | 100 | Plus |
Rh50-PA | 449 | CG7499-PA | 1..449 | 1..449 | 2295 | 100 | Plus |