Clone BO05635 Report

Search the DGRC for BO05635

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptRh50-RA
Protein status:BO05635.pep: validated full length
Sequenced Size:1381

Clone Sequence Records

BO05635.3prime Sequence

903 bp (792 high quality bases) assembled on 2005-12-02

> BO05635.3prime
ATGGTCTAGAAAGCTTGCTTCCTCCTTGTTCTCGGCAGCCGGAACTTCCC
AGTAGTGCTCGTCCTGGTGATGTTCGTCCTTCTTCAGGTTCCGGAAGTTG
GTGTACTTCAAAACGGCACCTGTCAAAATACCACCTCCGATGGCAATGAG
CAGTGTGACAGCGATGCCAAACAATTGGTAGCCCGCCTGCGAAGTAGCGT
TCCGGCCAAGACCGCCCATGATTTTGGTCTCGGTTCCGTTGGTGCCCACC
ATGGCCGGGAAAATGTCCTGCAGCTCGGATTGGTACTCGCCCACGGTGGC
CATCGAGGCGTAAATGGCGGAGGCAATGGCCGAAATCAGGGCAGGCATTC
CGTGCAGGTTGTGCACGCCACAGGTGTCGTGCAGCCTCAGATTGGCCGTC
ATCCAGGGTGTTAAATAGCGATAGCCGAGCACCGAGACCGTGCCGGCGAT
AATGCCAATTAAGACAGCTCCGTGGGCGCCGAGCAGCAAGTTGCACACCG
TGCCCACGGCAACTCCGCCGGCGAGGGTCGAGTTCTGCACGTGCACCATG
TCCAATTTATTCTCGTGGCTGACAAGCGCGGATACAACGAAGGTGGTCAC
TGTTGCCGCGGCTAATGACAGGAACGTGTTCAAAATGGCCCGCTCGCCGC
CGGCTCCGTCGGCCAGAACGGAGTTAAAGCTGGGCCAGTACACCCACAGG
AAGGTGGTGCCGATCATGGCGAAGATGTCCGACGTATAGCTGGCGCCCTC
TAGCTTTCCCGTTTCGTTCTGGTCGCTGGCGGGTCTCAGCATCAGGGCAA
CAGCCAGTCCAAAGTAGGCTCCAAAAGCATGGACAGTGATAGAGCCGCCG
CAGTCGCAGATACTGAACACATGAAGAGCCAGATACTCATTGGCCGCGAA
AAG

BO05635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7499-PA 1350 Rh50-RA 463..1347 903..19 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 789..1673 903..19 4425 100 Minus
Rh50-RB 2773 CG7499-RB 789..1673 903..19 4425 100 Minus
Rh50-RA 1836 CG7499-RA 789..1673 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4913695..4913956 861..600 1310 100 Minus
3L 28110227 3L 4918320..4918515 408..213 980 100 Minus
3L 28110227 3L 4917454..4917647 602..409 970 100 Minus
3L 28110227 3L 4918755..4918859 123..19 525 100 Minus
3L 28110227 3L 4918596..4918691 213..118 480 100 Minus
3L 28110227 3L 4913578..4913619 903..862 210 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:50:29 has no hits.

BO05635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:18 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-PA 463..1350 18..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:08 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7499-PA 463..1350 18..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:45:35 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 789..1678 11..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:15:05 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 789..1678 11..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:15:05 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4913578..4913619 862..903 100 -> Minus
3L 4913695..4913956 600..861 100 -> Minus
3L 4917457..4917647 409..599 100 -> Minus
3L 4918320..4918514 214..408 100 -> Minus
3L 4918596..4918689 120..213 100 -> Minus
3L 4918759..4918864 11..119 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:45:35 Download gff for BO05635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4913578..4913619 862..903 100 -> Minus
arm_3L 4913695..4913956 600..861 100 -> Minus
arm_3L 4917457..4917647 409..599 100 -> Minus
arm_3L 4918320..4918514 214..408 100 -> Minus
arm_3L 4918596..4918689 120..213 100 -> Minus
arm_3L 4918759..4918864 11..119 96   Minus

BO05635.5prime Sequence

820 bp (815 high quality bases) assembled on 2005-11-29

> BO05635.5prime
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAG

BO05635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7499-PA 1350 Rh50-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 326..1130 16..820 4025 100 Plus
Rh50-RB 2773 CG7499-RB 326..1130 16..820 4025 100 Plus
Rh50-RA 1836 CG7499-RA 326..1130 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4913695..4913956 521..782 1310 100 Plus
3L 28110227 3L 4910693..4910862 16..185 850 100 Plus
3L 28110227 3L 4912672..4912840 186..354 845 100 Plus
3L 28110227 3L 4913451..4913619 352..520 845 100 Plus
3L 28110227 3L 4917454..4917494 780..820 205 100 Plus
Blast to na_te.dros performed 2015-02-12 00:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 264..320 452..508 114 66.7 Plus

BO05635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:19 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:10 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7499-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:39:20 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 326..1130 16..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:10:59 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 326..1130 16..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:10:59 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4910693..4910862 16..185 100 -> Plus
3L 4912672..4912840 186..354 100 -> Plus
3L 4913454..4913619 355..520 100 -> Plus
3L 4913695..4913956 521..782 100 -> Plus
3L 4917457..4917494 783..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:39:20 Download gff for BO05635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4910693..4910862 16..185 100 -> Plus
arm_3L 4912672..4912840 186..354 100 -> Plus
arm_3L 4913454..4913619 355..520 100 -> Plus
arm_3L 4913695..4913956 521..782 100 -> Plus
arm_3L 4917457..4917494 783..820 100   Plus

BO05635.complete Sequence

1381 bp (1381 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630105

> BO05635.complete
GAAGTTATCAGTCGACATGCATTCGCCGGCTGCCAAAGTGTCGGGCTACG
TCGTCCTGATGATTGTGCAAATAATCTTCCTGGTTCTATTCTGGCTGTTC
GTGCGTTACGAAAAGACGGCGCTGCCCCTGGCAATCGACGCCGAAGACGC
TGGATCAGCAAACGAACACGTTTCCAAATATCCGCAGTTCCAGGACATCC
AGGTGATGATCTTCATTGGCTTTGGCTTCCTAATGACCTTCCTGCGGAAG
TACGGATACAGTGCCACCGGATTCACCCTGTTCATGGCTGCTCTAGTAGT
GCAATGGGCTGTGCTCATGAAGGGATTCCTCCACATGGAGGGCGGCAAGA
TCAGCCTCTCCCTGGAGAACATCATTGATGCGGATATAGCCGCCGCGGTG
CCCCTGATAAGCATGGGCGCTCTGCTCGGCAGAACCACGCCCATCCAACT
CCTGTGCATGTCCGTTTTTGAGGTGGCTCTTTTCGCGGCCAATGAGTATC
TGGCTCTTCATGTGTTCAGTATCTGCGACTGCGGCGGCTCTATCACTGTC
CATGCTTTTGGAGCCTACTTTGGACTGGCTGTTGCCCTGATGCTGAGACC
CGCCAGCGACCAGAACGAAACGGGAAAGCTAGAGGGCGCCAGCTATACGT
CGGACATCTTCGCCATGATCGGCACCACCTTCCTGTGGGTGTACTGGCCC
AGCTTTAACTCCGTTCTGGCCGACGGAGCCGGCGGCGAGCGGGCCATTTT
GAACACGTTCCTGTCATTAGCCGCGGCAACAGTGACCACCTTCGTTGTAT
CCGCGCTTGTCAGCCACGAGAATAAATTGGACATGGTGCACGTGCAGAAC
TCGACCCTCGCCGGCGGAGTTGCCGTGGGCACGGTGTGCAACTTGCTGCT
CGGCGCCCACGGAGCTGTCTTAATTGGCATTATCGCCGGCACGGTCTCGG
TGCTCGGCTATCGCTATTTAACACCCTGGATGACGGCCAATCTGAGGCTG
CACGACACCTGTGGCGTGCACAACCTGCACGGAATGCCTGCCCTGATTTC
GGCCATTGCCTCCGCCATTTACGCCTCGATGGCCACCGTGGGCGAGTACC
AATCCGAGCTGCAGGACATTTTCCCGGCCATGGTGGGCACCAACGGAACC
GAGACCAAAATCATGGGCGGTCTTGGCCGGAACGCTACTTCGCAGGCGGG
CTACCAATTGTTTGGCATCGCTGTCACACTGCTCATTGCCATCGGAGGTG
GTATTTTGACAGGTGCCGTTTTGAAGTACACCAACTTCCGGAACCTGAAG
AAGGACGAACATCACCAGGACGAGCACTACTGGGAAGTTCCGGCTGCCGA
GAACAAGGAGGAAGCAAGCTTTCTAGACCAT

BO05635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1383 CG7499-PC 1..1347 17..1363 6735 100 Plus
Rh50-RB 1383 CG7499-PB 1..1347 17..1363 6735 100 Plus
Rh50-RA 1350 CG7499-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-RC 1974 CG7499-RC 326..1673 16..1363 6740 100 Plus
Rh50-RB 2773 CG7499-RB 326..1673 16..1363 6740 100 Plus
Rh50-RA 1836 CG7499-RA 326..1673 16..1363 6740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4913695..4913956 521..782 1310 100 Plus
3L 28110227 3L 4918320..4918515 974..1169 980 100 Plus
3L 28110227 3L 4917454..4917647 780..973 970 100 Plus
3L 28110227 3L 4910693..4910862 16..185 850 100 Plus
3L 28110227 3L 4912672..4912840 186..354 845 100 Plus
3L 28110227 3L 4913451..4913619 352..520 845 100 Plus
3L 28110227 3L 4918755..4918859 1259..1363 525 100 Plus
3L 28110227 3L 4918596..4918691 1169..1264 480 100 Plus
Blast to na_te.dros performed 2014-11-26 16:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 264..320 452..508 114 66.7 Plus

BO05635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:03 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 1..1350 17..1364 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:33 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 308..1660 16..1371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:04 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 327..1673 17..1365 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:03 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 308..1660 16..1371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:59 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
Rh50-RA 327..1673 17..1365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:59 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4917457..4917647 783..973 100 -> Plus
3L 4918320..4918514 974..1168 100 -> Plus
3L 4918596..4918689 1169..1262 100 -> Plus
3L 4918759..4918859 1263..1365 98   Plus
3L 4910694..4910862 17..185 100 -> Plus
3L 4912672..4912840 186..354 100 -> Plus
3L 4913454..4913619 355..520 100 -> Plus
3L 4913695..4913956 521..782 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:04 Download gff for BO05635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4913695..4913956 521..782 100 -> Plus
arm_3L 4910694..4910862 17..185 100 -> Plus
arm_3L 4912672..4912840 186..354 100 -> Plus
arm_3L 4913454..4913619 355..520 100 -> Plus
arm_3L 4917457..4917647 783..973 100 -> Plus
arm_3L 4918320..4918514 974..1168 100 -> Plus
arm_3L 4918596..4918689 1169..1262 100 -> Plus
arm_3L 4918759..4918859 1263..1365 98   Plus

BO05635.pep Sequence

Translation from 16 to 1381

> BO05635.pep
MHSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE
HVSKYPQFQDIQVMIFIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVL
MKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPIQLLCMSV
FEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQN
ETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLS
LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGA
VLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA
IYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG
IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEEA
SFLDH

BO05635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
Rh50-PC 460 CG7499-PC 1..449 1..449 2295 100 Plus
Rh50-PB 460 CG7499-PB 1..449 1..449 2295 100 Plus
Rh50-PA 449 CG7499-PA 1..449 1..449 2295 100 Plus