Clone Sequence Records
BO05636.3prime Sequence
872 bp (773 high quality bases) assembled on 2005-12-02
> BO05636.3prime
ATGGTCTAGAAAGCTTGCAACTTGCGTCACGCACTGCGCGTATTTGTCCA
GTTCGCTCCTCAAAATCTTGACGCGTTCAGCTTCCGATTTCAGGGCATTT
ACCAGCTCCTCAATGGTTCGCTGTTGGTTTAGCACCAGCCCCTCCAGCTT
ATCCACCCGTTGCTCCAATTGGGCCACCCTTGAGGAACTGGCATCCTGGT
GGTTGTTCAGCTGGCTGGTGGGCTTCTCCTCCTGGGACTGCGAGCTGCTG
GCATTGGAGCTCTTTACCAGAGGCGAAACACTTCGTTGATTTCGTATAGC
TAGACTGTTTGGCCTTGTGGCTCTCGTCTCCTCGTCGCTGCTGGCGGTTT
GGACTTTGGCAGCCGACAAGCTGCGCGACATGATGGCATCGTTGGTGGTG
GTGTGGGAGCTACTGGTGATCACCGAGCTGCTGGTCGTTGAGTTCTCCAC
AAACATGGAGGAGGTCACCGCTGAAGATTGGACTTTCGTTGTGATACTGC
TGCTATTGCTGCTGACAGCTTGCTCGGCCGCAAAGAGTTTGGATGTCCTT
TCGGCCACCGAAGCTCCTCGTGGCTCCACACTGGGTGAGGTCTTTTTCCT
GGTGACCTGCGAGGCCTTCAGCTCCTCCATCCAAGGCGCCTTCTTCTTCT
CCCACTCACGTGGCTTGGGTTTGGCCAACTGTGGTTCCTCGCCGGTGGAA
TTGTCATCAGAAGTCTTCCCTCCAGCACCGCCATCTTCACTCAACTCACT
GGCACTTCCTGCTCCACCAGATCCGGACATTCCACTGCCATTTACATATA
CGGAAATGTTATTACTTTCGCCCAGCACATTGATAGCCGCCGATGGTGGA
CGTCTCTTTGCCGCCTTGACCC
BO05636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31012-PC | 2649 | CG31012-RC | 1793..2646 | 872..19 | 4220 | 99.7 | Minus |
| CG31012-PD | 1908 | CG31012-RD | 1052..1905 | 872..19 | 4220 | 99.7 | Minus |
| CG31012-PB | 1614 | CG31012-RB | 758..1611 | 872..19 | 4220 | 99.7 | Minus |
| CG31012-PA | 1638 | CG31012-RA | 758..1595 | 872..35 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 2624..3477 | 872..19 | 4240 | 99.8 | Minus |
| cindr-RI | 2225 | CG31012-RI | 864..1717 | 872..19 | 4240 | 99.8 | Minus |
| cindr-RH | 2281 | CG31012-RH | 920..1773 | 872..19 | 4240 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30825189..30826042 | 872..19 | 4240 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:22:04 has no hits.
BO05636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:20 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PB | 758..1614 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:12 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PB | 758..1614 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:50 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 920..1778 | 13..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:48 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 920..1778 | 13..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:48 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30825189..30826047 | 13..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:50 Download gff for
BO05636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650911..26651769 | 13..872 | 99 | | Minus |
BO05636.5prime Sequence
882 bp (814 high quality bases) assembled on 2005-12-02
> BO05636.5prime
GAAGTTATCAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCA
CCTCGGTGACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCC
ACCACATCGAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCAC
TACCAGCAGCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCT
TTGGTTCCCGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCC
ACCGGCAATGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGA
CCTGACTAAGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGC
GGAGCAGCACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACT
GGACTAACCTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGA
GAAGGTCAAGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGC
CGCTCAAGAAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTG
GGCGGCAAGAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCA
TGATTTGGCGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATC
AACTACCTGAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCC
ACGATTGCAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCAT
ACTCACGGATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCAC
CATCGGCGGCTATCAATGTGCTGGGCGAAAGTAATAACAATTCCGTATAT
GTAAATGGCAGTGGAAGGTCCGGATCTGGTGG
BO05636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31012-PC | 2649 | CG31012-RC | 1034..1901 | 15..882 | 4315 | 99.8 | Plus |
| CG31012-PD | 1908 | CG31012-RD | 293..1160 | 15..882 | 4315 | 99.8 | Plus |
| CG31012-PB | 1614 | CG31012-RB | 1..866 | 17..882 | 4305 | 99.8 | Plus |
| CG31012-PA | 1638 | CG31012-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..2732 | 15..882 | 4325 | 99.9 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..972 | 15..882 | 4325 | 99.9 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1028 | 15..882 | 4325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824362..30824888 | 15..541 | 2635 | 100 | Plus |
| 3R | 32079331 | 3R | 30824954..30825297 | 539..882 | 1705 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 01:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 123..171 | 114 | 74.5 | Plus |
BO05636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:21 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PC | 1029..1901 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:13 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-PD | 288..1160 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:41:53 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1028 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:09 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 156..1028 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:09 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824955..30825297 | 540..882 | 99 | | Plus |
| 3R | 30824357..30824886 | 9..539 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:41:53 Download gff for
BO05636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650079..26650608 | 9..539 | 99 | -> | Plus |
| arm_3R | 26650677..26651019 | 540..882 | 99 | | Plus |
BO05636.complete Sequence
1645 bp (1645 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ630106
> BO05636.complete
GAAGTTATCAGTCGACATGACCACAACGAACTCAAGCAATTCCAGCACCA
CCTCGGTGACCACGCAGCAGCAGAAGGAGCAGATCGGAGGCAGTTCCTCC
ACCACATCGAAGGTGTACATCAAGAAGACCGGGAGCAGTAGCAATAGCAC
TACCAGCAGCACCACCACAGCTTCCTCTTCGGCGGGTCGCAAGGAGAGCT
TTGGTTCCCGTGACTCCCTGAACGATATCCTTAGTGAAACGGGTCTGCCC
ACCGGCAATGTGGCTGCCCAAAGGAAATCCCTGGAGAACAAGAACCTGGA
CCTGACTAAGCCACCTGGAGTGGGAGCATCAGTGTCCATTGGACAGCAGC
GGAGCAGCACCTCTAGTGCCACCACCTCCTCAGCCACTACAGTAGCCACT
GGACTAACCTCATCATCAGTGAGCAAGTCCATGGAGAACATGCTGGACGA
GAAGGTCAAGTCGCCACCACCGCCGGTGCTCAGCAAGAAGCCCAGTGTGC
CGCTCAAGAAAACTCCCACCGGCGGAGTTCCTATGACTGGTAACCTTTTG
GGCGGCAAGAAAAAGAATACCGAGGGAAAGCTCACCACTGCCGTGTCCCA
TGATTTGGCGGATGGTCTTGCGGCCAGCAAGATGCTTTCAGGTGCTAATC
AACTACCTGAATCTGGAGCAGCTGGCAATGTGGTGATCCGGAGAGCTGCC
ACGATTGCAGTGGAGGATACAGATTTCGATCGCGTGGAGAGGGCTTCCAT
ACTCACGGATATGCGGCAAGGAAGGGTCAAGGCGCCAAAGAGACGTCCAC
CATCGGCGGCTATCAATGTGCTGGGCGAAAGTAATAACAATTCCGTATAT
GTAAATGGCAGTGGAATGTCCGGATCTGGTGGAGCAGGAAGTGCCAGTGA
GTTGAGTGAAGATGGCGGTGCTGGAGGGAAGACTTCTGATGACAATTCCA
CCGGCGAGGAACCACAGTTGGCCAAACCCAAGCCACGTGAGTGGGAGAAG
AAGAAGGCGCCTTGGATGGAGGAGCTGAAGGCCTCGCAGGTCACCAGGAA
AAAGACCTCACCCAGTGTGGAGCCACGAGGAGCTTCGGTGGCCGAAAGGA
CATCCAAACTCTTTGCGGCCGAGCAAGCTGTCAGCAGCAATAGCAGCAGT
ATCACAACGAAAGTCCAATCTTCAGCGGTGACCTCCTCCATGTTTGTGGA
GAACTCAACGACCAGCAGCTCGGTGATCACCAGTAGCTCCCACACCACCA
CCAACGATGCCATCATGTCGCGCAGCTTGTCGGCTGCCAAAGTCCAAACC
GCCAGCAGCGACGAGGAGACGAGAGCCACAAGGCCAAACAGTCTAGCTAT
ACGAAATCAACGAAGTGTTTCGCCTCTGGTAAAGAGCTCCAATGCCAGCA
GCTCGCAGTCCCAGGAGGAGAAGCCCACCAGCCAGCTGAACAACCACCAG
GATGCCAGTTCCTCAAGGGTGGCCCAATTGGAGCAACGGGTGGATAAGCT
GGAGGGGCTGGTGCTAAACCAACAGCGAACCATTGAGGAGCTGGTAAATG
CCCTGAAATCGGAAGCTGAACGCGTCAAGATTTTGAGGAGCGAACTGGAC
AAATACGCGCAGTGCGTGACGCAAGTTGCAAGCTTTCTAGACCAT
BO05636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 2826 | CG31012-PJ | 1211..2823 | 15..1627 | 8065 | 100 | Plus |
| cindr-RG | 2085 | CG31012-PG | 470..2082 | 15..1627 | 8065 | 100 | Plus |
| cindr-RF | 2079 | CG31012-PF | 464..2076 | 15..1627 | 8065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-RJ | 4440 | CG31012-RJ | 1865..3477 | 15..1627 | 8065 | 100 | Plus |
| cindr-RI | 2225 | CG31012-RI | 105..1717 | 15..1627 | 8065 | 100 | Plus |
| cindr-RH | 2281 | CG31012-RH | 161..1773 | 15..1627 | 8065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30824954..30826042 | 539..1627 | 5445 | 100 | Plus |
| 3R | 32079331 | 3R | 30824362..30824888 | 15..541 | 2635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1092..1142 | 123..171 | 114 | 74.5 | Plus |
BO05636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:18 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RD | 288..1908 | 9..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:41 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1804 | 9..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:09 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 163..1773 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:19 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31012-RB | 182..1804 | 9..1633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:28 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cindr-RH | 163..1773 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:28 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30824364..30824886 | 17..539 | 100 | -> | Plus |
| 3R | 30824955..30826042 | 540..1629 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:09 Download gff for
BO05636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26650086..26650608 | 17..539 | 100 | -> | Plus |
| arm_3R | 26650677..26651764 | 540..1629 | 99 | | Plus |
BO05636.pep Sequence
Translation from 16 to 1645
> BO05636.pep
MTTTNSSNSSTTSVTTQQQKEQIGGSSSTTSKVYIKKTGSSSNSTTSSTT
TASSSAGRKESFGSRDSLNDILSETGLPTGNVAAQRKSLENKNLDLTKPP
GVGASVSIGQQRSSTSSATTSSATTVATGLTSSSVSKSMENMLDEKVKSP
PPPVLSKKPSVPLKKTPTGGVPMTGNLLGGKKKNTEGKLTTAVSHDLADG
LAASKMLSGANQLPESGAAGNVVIRRAATIAVEDTDFDRVERASILTDMR
QGRVKAPKRRPPSAAINVLGESNNNSVYVNGSGMSGSGGAGSASELSEDG
GAGGKTSDDNSTGEEPQLAKPKPREWEKKKAPWMEELKASQVTRKKTSPS
VEPRGASVAERTSKLFAAEQAVSSNSSSITTKVQSSAVTSSMFVENSTTS
SSVITSSSHTTTNDAIMSRSLSAAKVQTASSDEETRATRPNSLAIRNQRS
VSPLVKSSNASSSQSQEEKPTSQLNNHQDASSSRVAQLEQRVDKLEGLVL
NQQRTIEELVNALKSEAERVKILRSELDKYAQCVTQVASFLDH
BO05636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cindr-PJ | 941 | CG31012-PJ | 405..941 | 1..537 | 2621 | 100 | Plus |
| cindr-PI | 537 | CG31012-PI | 1..537 | 1..537 | 2621 | 100 | Plus |
| cindr-PH | 537 | CG31012-PH | 1..537 | 1..537 | 2621 | 100 | Plus |
| cindr-PG | 694 | CG31012-PG | 158..694 | 1..537 | 2621 | 100 | Plus |
| cindr-PF | 692 | CG31012-PF | 156..692 | 1..537 | 2621 | 100 | Plus |
