Clone Sequence Records
BO05637.3prime Sequence
915 bp (789 high quality bases) assembled on 2005-12-02
> BO05637.3prime
ATGGTCTAGAAAGCTTGCGATGTAAGTGCGTTTCACTTTTGTCAGCGTTG
ACGTTTTGCAGGGCAGCTCTTTTTCCAAATGTTCCGTGGAGTTTTTGCAC
TCATGACTGCGATCCTTTTCTAAATCCAGATTAGGTGTTTTTTGTGTGGT
CGTATAGGCATTGGAGCCCATTAACAGGTTGATGTCTTTGCCAGTATTTT
GATGTTTAAATTGCATTGGCTTGCCGAAATGATTGCGGTGACTTTCATCC
ATTTGGGCCTCCATCAGGCGGCTCTTAGCCTTCACACAGCATATTCCTGC
GATTCCACCCACAAGGAAGGTAAAGAAAACGATAGTTGTAAGTAGCATGA
AGCTGGGCGTTGAAGCATATTTGATTTCATCTACACTGGCCGTAGACTTT
TGGGGATCGTTCAAATTCGGCATAATATCGTCGGGATCCATGGACGTAAG
GGTGATCTTGTTCAAACCAAAGTCATCGCCACCAGTTGGCTGTTGTTCCA
AGCTTGGCTGATTGCCCTGCGACGAGCCCACATTGGAGTACAAAAGCTTC
TGCTCCTCTGTTGGCGGTGGAGCCATGGTAACAAAGCTTACTGTTTCCGC
ACCGGGTGCATCTCGGGGAATATGAGGACATAGCAAGGCAGCGGCTTTCT
TGGTGCTATTCAAGCTTTGCAAATAAGTCTTTGTTCCGAACTTGTGCTGA
CTCGTAGCCAGGTTCTTGCATTCGTGTGTCTGTAAGTCCCAGGCGCAAAT
GGGATCCTGGAGACTTAAGCAGCCCAGACAGTCGACAATGTGAGAGCAGT
GGTGCANGGGCACGCTAACCAAGCTGCCATCGCTAACCACAACCAACGAG
TTTTTCGAAGTGGAGATCACCAATTCCCTAATTGGGCGTTCCAAGTGGAA
GGACCTGCTTCTCTG
BO05637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6446-PA | 2313 | Sema-1b-RA | 1444..2310 | 885..19 | 4316 | 99.8 | Minus |
CG6446-PB | 2313 | Sema-1b-RB | 1444..2310 | 885..19 | 4316 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:45:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sema-1b-RC | 3910 | CG6446-RC | 1989..2884 | 915..19 | 4434 | 99.7 | Minus |
Sema-1b-RB | 4262 | CG6446-RB | 1893..2788 | 915..19 | 4434 | 99.7 | Minus |
Sema-1b-RA | 4269 | CG6446-RA | 1900..2795 | 915..19 | 4434 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17674827..17675333 | 408..915 | 2464 | 99.4 | Plus |
2R | 25286936 | 2R | 17674313..17674508 | 19..214 | 980 | 100 | Plus |
2R | 25286936 | 2R | 17674571..17674765 | 214..408 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:45:55 has no hits.
BO05637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:22 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6446-PB | 1415..2313 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:14 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6446-PB | 1415..2313 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:08 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 1900..2795 | 19..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:41:35 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 1900..2795 | 19..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:41:35 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17674313..17674508 | 19..214 | 100 | <- | Plus |
2R | 17674572..17674764 | 215..407 | 100 | <- | Plus |
2R | 17674827..17675333 | 408..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:08 Download gff for
BO05637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13561818..13562013 | 19..214 | 100 | <- | Plus |
arm_2R | 13562077..13562269 | 215..407 | 100 | <- | Plus |
arm_2R | 13562332..13562838 | 408..915 | 99 | | Plus |
BO05637.5prime Sequence
885 bp (820 high quality bases) assembled on 2005-12-02
> BO05637.5prime
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGGGTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAG
AGTTGGACTTCCTTCCTTAANGCGCGACTCAACTG
BO05637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6446-PA | 2313 | Sema-1b-RA | 1..869 | 17..885 | 4326 | 99.8 | Plus |
CG6446-PB | 2313 | Sema-1b-RB | 1..869 | 17..885 | 4326 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sema-1b-RC | 3910 | CG6446-RC | 575..1443 | 17..885 | 4334 | 99.9 | Plus |
Sema-1b-RB | 4262 | CG6446-RB | 479..1347 | 17..885 | 4334 | 99.9 | Plus |
Sema-1b-RA | 4269 | CG6446-RA | 486..1354 | 17..885 | 4334 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17675952..17676593 | 885..244 | 3199 | 99.8 | Minus |
2R | 25286936 | 2R | 17678272..17678404 | 149..17 | 665 | 100 | Minus |
2R | 25286936 | 2R | 17677825..17677919 | 244..150 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:15 has no hits.
BO05637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:23 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6446-PB | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:15 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6446-PB | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:27 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 479..1354 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:14 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 479..1354 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:14 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17675952..17676593 | 244..885 | 99 | <- | Minus |
2R | 17677826..17677919 | 150..243 | 100 | <- | Minus |
2R | 17678272..17678411 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:27 Download gff for
BO05637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13565777..13565916 | 9..149 | 97 | | Minus |
arm_2R | 13563457..13564098 | 244..885 | 99 | <- | Minus |
arm_2R | 13565331..13565424 | 150..243 | 100 | <- | Minus |
BO05637.complete Sequence
2344 bp assembled on 2008-08-14
GenBank Submission: FJ630107
> BO05637.complete
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGGGTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAG
AGTTGGACTTCCTTCCTTAAGGCGCGACTCAACTGCTCGGTGCCCGGCGA
GTTTCCGTTCTATTTTGACGAAATCCAGGCCATTAGTCCGATTGTGGAGA
GCGGATCCAAGTCACTGATTTATGCTGTCTTCACAACCTCTGTGAATGCC
ATTCCTGGCTCGGCCGTATGCGCATTTAACGTAGACGATATACTGGCCGC
CTTTGATGGAGAGTTCAAGTCGCAGAAAGATTCACAGTCCCATTGGCTGC
CAGTGGAGCGTGAGCAAGTGCCGAAACCACGTCCAGGACAGTGCGTTGAG
GACTCTAGAACTCTGACCAGCATCGCGGTTAATTTCATTAAGAACCATCC
CTTGATGGAGGAGGCTGTGCCAGCAGTGCACGGTCGTCCGCTGCTGACCA
AGGTGAATCTGCACCACCGACTTACTGCGATCGCAGTGCATCCGCAGGTA
AAGTCCCTAAGTGGAGCTTACTACGATGTTATATACAGTGGCACCGATGA
CGGCAAGGTGACCAAGTTCATCAATATACTGAGCACTCACCCGAACTCAA
CTGTTGATCGCCTGAAGACAGTGGTTATATCAGAGATGCAGGTCCTTCCA
CTTGGAACGCCAATTAGGGAATTGGTGATCTCCACTTCGAAAAACTCGTT
GGTTGTGGTTAGCGATGGCAGCTTGGTTAGCGTGCCCCTGCACCACTGCT
CTCACATTGTCGACTGTCTGGGCTGCTTAAGTCTCCAGGATCCCATTTGC
GCCTGGGACTTACAGACACACGAATGCAAGAACCTGGCTACGAGTCAGCA
CAAGTTCGGAACAAAGACTTATTTGCAAAGCTTGAATAGCACCAAGAAAG
CCGCTGCCTTGCTATGTCCTCATATTCCCCGAGATGCACCCGGTGCGGAA
ACAGTAAGCTTTGTTACCATGGCTCCACCGCCAACAGAGGAGCAGAAGCT
TTTGTACTCCAATGTGGGCTCGTCGCAGGGCAATCAGCCAAGCTTGGAAC
AACAGCCAACTGGTGGCGATGACTTTGGTTTGAACAAGATCACCCTTACG
TCCATGGATCCCGACGATATTATGCCGAATTTGAACGATCCCCAAAAGTC
TACGGCCAGTGTAGATGAAATCAAATATGCTTCAACGCCCAGCTTCATGC
TACTTACAACTATCGTTTTCTTTACCTTCCTTGTGGGTGGAATCGCAGGA
ATATGCTGTGTGAAGGCTAAGAGCCGCCTGATGGAGGCCCAAATGGATGA
AAGTCACCGCAATCATTTCGGCAAGCCAATGCAATTTAAACATCAAAATA
CTGGCAAAGACATCAACCTGTTAATGGGCTCCAATGCCTATACGACCACA
CAAAAAACACCTAATCTGGATTTAGAAAAGGATCGCAGTCATGAGTGCAA
AAACTCCACGGAACATTTGGAAAAAGAGCTGCCCTGCAAAACGTCAACGC
TGACAAAAGTGAAACGCACTTACATCGCAAGCTTTCTAGACCAT
BO05637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sema-1b-RC | 2313 | CG6446-PC | 1..2310 | 17..2326 | 11550 | 100 | Plus |
Sema-1b-RB | 2313 | CG6446-PB | 1..2310 | 17..2326 | 11550 | 100 | Plus |
Sema-1b-RA | 2313 | CG6446-PA | 1..2310 | 17..2326 | 11550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sema-1b-RC | 3910 | CG6446-RC | 575..2884 | 17..2326 | 11550 | 100 | Plus |
Sema-1b-RB | 4262 | CG6446-RB | 479..2788 | 17..2326 | 11550 | 100 | Plus |
Sema-1b-RA | 4269 | CG6446-RA | 486..2795 | 17..2326 | 11550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17674827..17675837 | 1937..927 | 5055 | 100 | Minus |
2R | 25286936 | 2R | 17675911..17676593 | 926..244 | 3415 | 100 | Minus |
2R | 25286936 | 2R | 17674313..17674508 | 2326..2131 | 980 | 100 | Minus |
2R | 25286936 | 2R | 17674571..17674765 | 2131..1937 | 975 | 100 | Minus |
2R | 25286936 | 2R | 17678272..17678404 | 149..17 | 665 | 100 | Minus |
2R | 25286936 | 2R | 17677825..17677919 | 244..150 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:18 has no hits.
BO05637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:06 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RB | 393..2709 | 9..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:01 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 486..2795 | 17..2328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:36 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RB | 400..2709 | 17..2328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:57 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sema-1b-RA | 486..2795 | 17..2328 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:57 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17674311..17674508 | 2131..2328 | 98 | <- | Minus |
2R | 17674572..17674764 | 1938..2130 | 100 | <- | Minus |
2R | 17674827..17675837 | 927..1937 | 100 | <- | Minus |
2R | 17675911..17676593 | 244..926 | 100 | <- | Minus |
2R | 17677826..17677919 | 150..243 | 100 | <- | Minus |
2R | 17678272..17678404 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:01 Download gff for
BO05637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13561816..13562013 | 2131..2328 | 98 | <- | Minus |
arm_2R | 13562077..13562269 | 1938..2130 | 100 | <- | Minus |
arm_2R | 13562332..13563342 | 927..1937 | 100 | <- | Minus |
arm_2R | 13563416..13564098 | 244..926 | 100 | <- | Minus |
arm_2R | 13565331..13565424 | 150..243 | 100 | <- | Minus |
arm_2R | 13565777..13565909 | 17..149 | 100 | | Minus |
BO05637.pep Sequence
Translation from 16 to 2344
> BO05637.pep
MSSKSRPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVL
AHFIGNSTDYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDA
DRELCALKGKHEWDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEV
SSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATV
ADFSGGDPLIYRENLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSME
VMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYF
DEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEF
KSQKDSQSHWLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEA
VPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTK
FINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSD
GSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTK
TYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNV
GSSQGNQPSLEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVD
EIKYASTPSFMLLTTIVFFTFLVGGIAGICCVKAKSRLMEAQMDESHRNH
FGKPMQFKHQNTGKDINLLMGSNAYTTTQKTPNLDLEKDRSHECKNSTEH
LEKELPCKTSTLTKVKRTYIASFLDH
BO05637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sema-1b-PC | 770 | CG6446-PC | 1..770 | 1..770 | 4056 | 100 | Plus |
Sema-1b-PB | 770 | CG6446-PB | 1..770 | 1..770 | 4056 | 100 | Plus |
Sema-1b-PA | 770 | CG6446-PA | 1..770 | 1..770 | 4056 | 100 | Plus |
Sema-1a-PI | 817 | CG18405-PI | 52..597 | 19..545 | 1169 | 42.6 | Plus |
Sema-1a-PH | 820 | CG18405-PH | 52..597 | 19..545 | 1169 | 42.6 | Plus |