Clone BO05637 Report

Search the DGRC for BO05637

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptSema-1b-RA
Protein status:BO05637.pep: Imported from assembly
Sequenced Size:2344

Clone Sequence Records

BO05637.3prime Sequence

915 bp (789 high quality bases) assembled on 2005-12-02

> BO05637.3prime
ATGGTCTAGAAAGCTTGCGATGTAAGTGCGTTTCACTTTTGTCAGCGTTG
ACGTTTTGCAGGGCAGCTCTTTTTCCAAATGTTCCGTGGAGTTTTTGCAC
TCATGACTGCGATCCTTTTCTAAATCCAGATTAGGTGTTTTTTGTGTGGT
CGTATAGGCATTGGAGCCCATTAACAGGTTGATGTCTTTGCCAGTATTTT
GATGTTTAAATTGCATTGGCTTGCCGAAATGATTGCGGTGACTTTCATCC
ATTTGGGCCTCCATCAGGCGGCTCTTAGCCTTCACACAGCATATTCCTGC
GATTCCACCCACAAGGAAGGTAAAGAAAACGATAGTTGTAAGTAGCATGA
AGCTGGGCGTTGAAGCATATTTGATTTCATCTACACTGGCCGTAGACTTT
TGGGGATCGTTCAAATTCGGCATAATATCGTCGGGATCCATGGACGTAAG
GGTGATCTTGTTCAAACCAAAGTCATCGCCACCAGTTGGCTGTTGTTCCA
AGCTTGGCTGATTGCCCTGCGACGAGCCCACATTGGAGTACAAAAGCTTC
TGCTCCTCTGTTGGCGGTGGAGCCATGGTAACAAAGCTTACTGTTTCCGC
ACCGGGTGCATCTCGGGGAATATGAGGACATAGCAAGGCAGCGGCTTTCT
TGGTGCTATTCAAGCTTTGCAAATAAGTCTTTGTTCCGAACTTGTGCTGA
CTCGTAGCCAGGTTCTTGCATTCGTGTGTCTGTAAGTCCCAGGCGCAAAT
GGGATCCTGGAGACTTAAGCAGCCCAGACAGTCGACAATGTGAGAGCAGT
GGTGCANGGGCACGCTAACCAAGCTGCCATCGCTAACCACAACCAACGAG
TTTTTCGAAGTGGAGATCACCAATTCCCTAATTGGGCGTTCCAAGTGGAA
GGACCTGCTTCTCTG

BO05637.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6446-PA 2313 Sema-1b-RA 1444..2310 885..19 4316 99.8 Minus
CG6446-PB 2313 Sema-1b-RB 1444..2310 885..19 4316 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1b-RC 3910 CG6446-RC 1989..2884 915..19 4434 99.7 Minus
Sema-1b-RB 4262 CG6446-RB 1893..2788 915..19 4434 99.7 Minus
Sema-1b-RA 4269 CG6446-RA 1900..2795 915..19 4434 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17674827..17675333 408..915 2464 99.4 Plus
2R 25286936 2R 17674313..17674508 19..214 980 100 Plus
2R 25286936 2R 17674571..17674765 214..408 975 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:45:55 has no hits.

BO05637.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:22 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6446-PB 1415..2313 18..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:14 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6446-PB 1415..2313 18..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:08 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 1900..2795 19..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:41:35 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 1900..2795 19..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:41:35 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17674313..17674508 19..214 100 <- Plus
2R 17674572..17674764 215..407 100 <- Plus
2R 17674827..17675333 408..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:08 Download gff for BO05637.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13561818..13562013 19..214 100 <- Plus
arm_2R 13562077..13562269 215..407 100 <- Plus
arm_2R 13562332..13562838 408..915 99   Plus

BO05637.5prime Sequence

885 bp (820 high quality bases) assembled on 2005-12-02

> BO05637.5prime
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGGGTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAG
AGTTGGACTTCCTTCCTTAANGCGCGACTCAACTG

BO05637.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6446-PA 2313 Sema-1b-RA 1..869 17..885 4326 99.8 Plus
CG6446-PB 2313 Sema-1b-RB 1..869 17..885 4326 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1b-RC 3910 CG6446-RC 575..1443 17..885 4334 99.9 Plus
Sema-1b-RB 4262 CG6446-RB 479..1347 17..885 4334 99.9 Plus
Sema-1b-RA 4269 CG6446-RA 486..1354 17..885 4334 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17675952..17676593 885..244 3199 99.8 Minus
2R 25286936 2R 17678272..17678404 149..17 665 100 Minus
2R 25286936 2R 17677825..17677919 244..150 475 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:15 has no hits.

BO05637.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:23 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6446-PB 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:15 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6446-PB 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:27 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 479..1354 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:14 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 479..1354 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:14 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17675952..17676593 244..885 99 <- Minus
2R 17677826..17677919 150..243 100 <- Minus
2R 17678272..17678411 9..149 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:27 Download gff for BO05637.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13565777..13565916 9..149 97   Minus
arm_2R 13563457..13564098 244..885 99 <- Minus
arm_2R 13565331..13565424 150..243 100 <- Minus

BO05637.complete Sequence

2344 bp assembled on 2008-08-14

GenBank Submission: FJ630107

> BO05637.complete
GAAGTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGA
TGTTAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTG
ACGATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAA
ACAAGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCA
AGATTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTC
ATCTACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTG
GCACAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACG
AGTGGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGC
GAGGTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTA
CACGCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCC
ATGCCATGCGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGC
CCCTACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTT
GTACAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACA
GGGAGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCG
GACTTTGTTGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCG
CGAACTCTCAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCG
TCGCCAGGGTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAG
AGTTGGACTTCCTTCCTTAAGGCGCGACTCAACTGCTCGGTGCCCGGCGA
GTTTCCGTTCTATTTTGACGAAATCCAGGCCATTAGTCCGATTGTGGAGA
GCGGATCCAAGTCACTGATTTATGCTGTCTTCACAACCTCTGTGAATGCC
ATTCCTGGCTCGGCCGTATGCGCATTTAACGTAGACGATATACTGGCCGC
CTTTGATGGAGAGTTCAAGTCGCAGAAAGATTCACAGTCCCATTGGCTGC
CAGTGGAGCGTGAGCAAGTGCCGAAACCACGTCCAGGACAGTGCGTTGAG
GACTCTAGAACTCTGACCAGCATCGCGGTTAATTTCATTAAGAACCATCC
CTTGATGGAGGAGGCTGTGCCAGCAGTGCACGGTCGTCCGCTGCTGACCA
AGGTGAATCTGCACCACCGACTTACTGCGATCGCAGTGCATCCGCAGGTA
AAGTCCCTAAGTGGAGCTTACTACGATGTTATATACAGTGGCACCGATGA
CGGCAAGGTGACCAAGTTCATCAATATACTGAGCACTCACCCGAACTCAA
CTGTTGATCGCCTGAAGACAGTGGTTATATCAGAGATGCAGGTCCTTCCA
CTTGGAACGCCAATTAGGGAATTGGTGATCTCCACTTCGAAAAACTCGTT
GGTTGTGGTTAGCGATGGCAGCTTGGTTAGCGTGCCCCTGCACCACTGCT
CTCACATTGTCGACTGTCTGGGCTGCTTAAGTCTCCAGGATCCCATTTGC
GCCTGGGACTTACAGACACACGAATGCAAGAACCTGGCTACGAGTCAGCA
CAAGTTCGGAACAAAGACTTATTTGCAAAGCTTGAATAGCACCAAGAAAG
CCGCTGCCTTGCTATGTCCTCATATTCCCCGAGATGCACCCGGTGCGGAA
ACAGTAAGCTTTGTTACCATGGCTCCACCGCCAACAGAGGAGCAGAAGCT
TTTGTACTCCAATGTGGGCTCGTCGCAGGGCAATCAGCCAAGCTTGGAAC
AACAGCCAACTGGTGGCGATGACTTTGGTTTGAACAAGATCACCCTTACG
TCCATGGATCCCGACGATATTATGCCGAATTTGAACGATCCCCAAAAGTC
TACGGCCAGTGTAGATGAAATCAAATATGCTTCAACGCCCAGCTTCATGC
TACTTACAACTATCGTTTTCTTTACCTTCCTTGTGGGTGGAATCGCAGGA
ATATGCTGTGTGAAGGCTAAGAGCCGCCTGATGGAGGCCCAAATGGATGA
AAGTCACCGCAATCATTTCGGCAAGCCAATGCAATTTAAACATCAAAATA
CTGGCAAAGACATCAACCTGTTAATGGGCTCCAATGCCTATACGACCACA
CAAAAAACACCTAATCTGGATTTAGAAAAGGATCGCAGTCATGAGTGCAA
AAACTCCACGGAACATTTGGAAAAAGAGCTGCCCTGCAAAACGTCAACGC
TGACAAAAGTGAAACGCACTTACATCGCAAGCTTTCTAGACCAT

BO05637.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1b-RC 2313 CG6446-PC 1..2310 17..2326 11550 100 Plus
Sema-1b-RB 2313 CG6446-PB 1..2310 17..2326 11550 100 Plus
Sema-1b-RA 2313 CG6446-PA 1..2310 17..2326 11550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1b-RC 3910 CG6446-RC 575..2884 17..2326 11550 100 Plus
Sema-1b-RB 4262 CG6446-RB 479..2788 17..2326 11550 100 Plus
Sema-1b-RA 4269 CG6446-RA 486..2795 17..2326 11550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17674827..17675837 1937..927 5055 100 Minus
2R 25286936 2R 17675911..17676593 926..244 3415 100 Minus
2R 25286936 2R 17674313..17674508 2326..2131 980 100 Minus
2R 25286936 2R 17674571..17674765 2131..1937 975 100 Minus
2R 25286936 2R 17678272..17678404 149..17 665 100 Minus
2R 25286936 2R 17677825..17677919 244..150 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:18 has no hits.

BO05637.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:06 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RB 393..2709 9..2326 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:01 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 486..2795 17..2328 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:36 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RB 400..2709 17..2328 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:57 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
Sema-1b-RA 486..2795 17..2328 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:57 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17674311..17674508 2131..2328 98 <- Minus
2R 17674572..17674764 1938..2130 100 <- Minus
2R 17674827..17675837 927..1937 100 <- Minus
2R 17675911..17676593 244..926 100 <- Minus
2R 17677826..17677919 150..243 100 <- Minus
2R 17678272..17678404 17..149 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:01 Download gff for BO05637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13561816..13562013 2131..2328 98 <- Minus
arm_2R 13562077..13562269 1938..2130 100 <- Minus
arm_2R 13562332..13563342 927..1937 100 <- Minus
arm_2R 13563416..13564098 244..926 100 <- Minus
arm_2R 13565331..13565424 150..243 100 <- Minus
arm_2R 13565777..13565909 17..149 100   Minus

BO05637.pep Sequence

Translation from 16 to 2344

> BO05637.pep
MSSKSRPSSAAMLVNAIPMILLITLSGLTIVAGWMPDVKPDLQTKQDKVL
AHFIGNSTDYFKILDHNDEFVLVGAKDVIYNVSLNGLKEIARLEWHSTDA
DRELCALKGKHEWDCHNYLRVYALRPNGEVLLCGTNSYKPRCRHYTPVEV
SSEEAGSAGHAHAMRYEVSRDVEAQGLCPYSPAHNSTYAFADGHLYSATV
ADFSGGDPLIYRENLRTEQYDLKQLNQPDFVGAIERNGYVLFFFRELSME
VMNFGKAVYSRVARVCKNDRGGPYSHGKSWTSFLKARLNCSVPGEFPFYF
DEIQAISPIVESGSKSLIYAVFTTSVNAIPGSAVCAFNVDDILAAFDGEF
KSQKDSQSHWLPVEREQVPKPRPGQCVEDSRTLTSIAVNFIKNHPLMEEA
VPAVHGRPLLTKVNLHHRLTAIAVHPQVKSLSGAYYDVIYSGTDDGKVTK
FINILSTHPNSTVDRLKTVVISEMQVLPLGTPIRELVISTSKNSLVVVSD
GSLVSVPLHHCSHIVDCLGCLSLQDPICAWDLQTHECKNLATSQHKFGTK
TYLQSLNSTKKAAALLCPHIPRDAPGAETVSFVTMAPPPTEEQKLLYSNV
GSSQGNQPSLEQQPTGGDDFGLNKITLTSMDPDDIMPNLNDPQKSTASVD
EIKYASTPSFMLLTTIVFFTFLVGGIAGICCVKAKSRLMEAQMDESHRNH
FGKPMQFKHQNTGKDINLLMGSNAYTTTQKTPNLDLEKDRSHECKNSTEH
LEKELPCKTSTLTKVKRTYIASFLDH

BO05637.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Sema-1b-PC 770 CG6446-PC 1..770 1..770 4056 100 Plus
Sema-1b-PB 770 CG6446-PB 1..770 1..770 4056 100 Plus
Sema-1b-PA 770 CG6446-PA 1..770 1..770 4056 100 Plus
Sema-1a-PI 817 CG18405-PI 52..597 19..545 1169 42.6 Plus
Sema-1a-PH 820 CG18405-PH 52..597 19..545 1169 42.6 Plus