Clone Sequence Records
BO05640.3prime Sequence
807 bp (806 high quality bases) assembled on 2005-12-02
> BO05640.3prime
ATGGTCTAGAAAGCTTGCTTGGCGCTGTTGAGCGTTACTGATGAACTCGC
CGTGCTTTTGCACCACATCGGCCACGATGGGCTCCTCGATCTCGAGTCCT
TGCAGCGTCTGTTCGCGAGTCAAATGCAGCTCGTAGGAATCTGTGGGCGT
GACGAACACCACGCGATGCTTGCGTGTCTGCAGCACATTGGCAATGACCA
GCTTGTGCTTGTATTTGTTGAGACTGTCACGTGCCTTCACAATCAATAGG
CTCTCGTCCGTTTCCAGTTTAAAGGACACCACAAAGGCGTGCGGGACCCA
CAAACTGGCGAGGGGGGCCAGCATTTTTGGCACCAGCTGCAGCGAAATCG
TCGGCGCTCCATCTCCTGATTGCATTTTGTGGGTGGGCATCATGTCCTCG
GGTATGTAGAAATCGGATACGGCTGCGGCTAGGTAGAGCACGGCTCGCTC
CTCGAAGGCGGCCAGGCACTCGCAGGCGGCGCGGAGCAGCCACATGTAGT
CCACCACGCTGGTGAAGTTCACGTACAGGATCATCTGCGTTTCGCGGGCT
ATCTTGTATTTGGCCAGCACCGGAGCAAACACGTCCACCGAATCCGGTTT
GATGGCTATCGTCGAACTCTGGCTGTTGTCCGCAATGTCCAGCATGTCGA
AGAACTGCTGGCCGGTGAAGTGGCGCGTGAAGGGCTCCAGCGACTTGTGG
CGATGCATGAAAATCACGGCATAGTCGTGGTCGAGGAAGTATTCCGCCGA
GGCGGAGCCACGCGTTCCAGCACTAAAATTGTCCACAAACCGCACCGTAT
TGTGCTC
BO05640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5629-PA | 942 | CG5629-RA | 151..939 | 807..19 | 3945 | 100 | Minus |
CG5629-PB | 942 | CG5629-RB | 151..939 | 807..19 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 801..1589 | 807..19 | 3945 | 100 | Minus |
Ppcs-RC | 4134 | CG5629-RC | 801..1589 | 807..19 | 3945 | 100 | Minus |
Ppcs-RA | 4134 | CG5629-RA | 801..1589 | 807..19 | 3945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145900 | 388..807 | 2100 | 100 | Plus |
3R | 32079331 | 3R | 19142088..19142274 | 202..388 | 935 | 100 | Plus |
3R | 32079331 | 3R | 19141879..19142020 | 62..203 | 710 | 100 | Plus |
3R | 32079331 | 3R | 19141599..19141644 | 19..64 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:21:53 has no hits.
BO05640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:28 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PA | 151..942 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:22 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PB | 151..942 | 16..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:19 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 801..1589 | 19..807 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:49 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 801..1589 | 19..807 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:49 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19141599..19141643 | 19..63 | 100 | <- | Plus |
3R | 19141881..19142018 | 64..201 | 100 | <- | Plus |
3R | 19142088..19142273 | 202..387 | 100 | <- | Plus |
3R | 19145481..19145900 | 388..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:19 Download gff for
BO05640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967321..14967365 | 19..63 | 100 | <- | Plus |
arm_3R | 14967603..14967740 | 64..201 | 100 | <- | Plus |
arm_3R | 14967810..14967995 | 202..387 | 100 | <- | Plus |
arm_3R | 14971203..14971622 | 388..807 | 100 | | Plus |
BO05640.5prime Sequence
908 bp (793 high quality bases) assembled on 2005-12-02
> BO05640.5prime
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATG
BO05640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5629-PA | 942 | CG5629-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
CG5629-PB | 942 | CG5629-RB | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 649..1542 | 15..908 | 4470 | 100 | Plus |
Ppcs-RC | 4134 | CG5629-RC | 649..1542 | 15..908 | 4470 | 100 | Plus |
Ppcs-RA | 4134 | CG5629-RA | 649..1542 | 15..908 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145925 | 586..142 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 19142088..19142274 | 772..586 | 935 | 100 | Minus |
3R | 32079331 | 3R | 19141883..19142020 | 908..771 | 690 | 100 | Minus |
3R | 32079331 | 3R | 19147135..19147262 | 142..15 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:34:44 has no hits.
BO05640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:29 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PA | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:23 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-PB | 1..892 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:36 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 637..1542 | 2..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:34 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 637..1542 | 2..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:34 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19141883..19142018 | 773..908 | 100 | <- | Minus |
3R | 19142088..19142273 | 587..772 | 100 | <- | Minus |
3R | 19145481..19145924 | 143..586 | 100 | <- | Minus |
3R | 19147135..19147274 | 2..142 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:36 Download gff for
BO05640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967605..14967740 | 773..908 | 100 | <- | Minus |
arm_3R | 14967810..14967995 | 587..772 | 100 | <- | Minus |
arm_3R | 14971203..14971646 | 143..586 | 100 | <- | Minus |
arm_3R | 14972857..14972996 | 2..142 | 96 | | Minus |
BO05640.complete Sequence
973 bp (973 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630110
> BO05640.complete
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATGTGGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGC
GCCAAGCAAGCTTTCTAGACCAT
BO05640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 942 | CG5629-PD | 1..939 | 17..955 | 4695 | 100 | Plus |
Ppcs-RC | 1122 | CG5629-PC | 1..939 | 17..955 | 4695 | 100 | Plus |
Ppcs-RA | 942 | CG5629-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-RD | 2192 | CG5629-RD | 649..1589 | 15..955 | 4705 | 100 | Plus |
Ppcs-RC | 4134 | CG5629-RC | 649..1589 | 15..955 | 4705 | 100 | Plus |
Ppcs-RA | 4134 | CG5629-RA | 649..1589 | 15..955 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19145481..19145925 | 586..142 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 19142088..19142274 | 772..586 | 935 | 100 | Minus |
3R | 32079331 | 3R | 19141879..19142020 | 912..771 | 710 | 100 | Minus |
3R | 32079331 | 3R | 19147135..19147262 | 142..15 | 640 | 100 | Minus |
3R | 32079331 | 3R | 19141599..19141644 | 955..910 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:57:42 has no hits.
BO05640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:31 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 1..942 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:45 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 634..1586 | 2..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:26 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 651..1589 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:31 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5629-RB | 634..1586 | 2..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:43 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcs-RA | 651..1589 | 17..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:43 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19141595..19141643 | 911..957 | 95 | <- | Minus |
3R | 19141881..19142018 | 773..910 | 100 | <- | Minus |
3R | 19142088..19142273 | 587..772 | 100 | <- | Minus |
3R | 19145481..19145924 | 143..586 | 100 | <- | Minus |
3R | 19147135..19147260 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:26 Download gff for
BO05640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14967317..14967365 | 911..957 | 95 | <- | Minus |
arm_3R | 14967603..14967740 | 773..910 | 100 | <- | Minus |
arm_3R | 14967810..14967995 | 587..772 | 100 | <- | Minus |
arm_3R | 14971203..14971646 | 143..586 | 100 | <- | Minus |
arm_3R | 14972857..14972982 | 17..142 | 100 | | Minus |
BO05640.pep Sequence
Translation from 16 to 973
> BO05640.pep
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQASFLDH
BO05640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcs-PD | 313 | CG5629-PD | 1..313 | 1..313 | 1625 | 100 | Plus |
Ppcs-PA | 313 | CG5629-PA | 1..313 | 1..313 | 1625 | 100 | Plus |
Ppcs-PC | 373 | CG5629-PC | 1..313 | 1..313 | 1625 | 100 | Plus |