Clone BO05640 Report

Search the DGRC for BO05640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptPpcs-RA
Protein status:BO05640.pep: validated full length
Sequenced Size:973

Clone Sequence Records

BO05640.3prime Sequence

807 bp (806 high quality bases) assembled on 2005-12-02

> BO05640.3prime
ATGGTCTAGAAAGCTTGCTTGGCGCTGTTGAGCGTTACTGATGAACTCGC
CGTGCTTTTGCACCACATCGGCCACGATGGGCTCCTCGATCTCGAGTCCT
TGCAGCGTCTGTTCGCGAGTCAAATGCAGCTCGTAGGAATCTGTGGGCGT
GACGAACACCACGCGATGCTTGCGTGTCTGCAGCACATTGGCAATGACCA
GCTTGTGCTTGTATTTGTTGAGACTGTCACGTGCCTTCACAATCAATAGG
CTCTCGTCCGTTTCCAGTTTAAAGGACACCACAAAGGCGTGCGGGACCCA
CAAACTGGCGAGGGGGGCCAGCATTTTTGGCACCAGCTGCAGCGAAATCG
TCGGCGCTCCATCTCCTGATTGCATTTTGTGGGTGGGCATCATGTCCTCG
GGTATGTAGAAATCGGATACGGCTGCGGCTAGGTAGAGCACGGCTCGCTC
CTCGAAGGCGGCCAGGCACTCGCAGGCGGCGCGGAGCAGCCACATGTAGT
CCACCACGCTGGTGAAGTTCACGTACAGGATCATCTGCGTTTCGCGGGCT
ATCTTGTATTTGGCCAGCACCGGAGCAAACACGTCCACCGAATCCGGTTT
GATGGCTATCGTCGAACTCTGGCTGTTGTCCGCAATGTCCAGCATGTCGA
AGAACTGCTGGCCGGTGAAGTGGCGCGTGAAGGGCTCCAGCGACTTGTGG
CGATGCATGAAAATCACGGCATAGTCGTGGTCGAGGAAGTATTCCGCCGA
GGCGGAGCCACGCGTTCCAGCACTAAAATTGTCCACAAACCGCACCGTAT
TGTGCTC

BO05640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5629-PA 942 CG5629-RA 151..939 807..19 3945 100 Minus
CG5629-PB 942 CG5629-RB 151..939 807..19 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 801..1589 807..19 3945 100 Minus
Ppcs-RC 4134 CG5629-RC 801..1589 807..19 3945 100 Minus
Ppcs-RA 4134 CG5629-RA 801..1589 807..19 3945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145900 388..807 2100 100 Plus
3R 32079331 3R 19142088..19142274 202..388 935 100 Plus
3R 32079331 3R 19141879..19142020 62..203 710 100 Plus
3R 32079331 3R 19141599..19141644 19..64 230 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:21:53 has no hits.

BO05640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:28 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PA 151..942 16..807 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:22 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PB 151..942 16..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:19 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 801..1589 19..807 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:49 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 801..1589 19..807 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:49 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19141599..19141643 19..63 100 <- Plus
3R 19141881..19142018 64..201 100 <- Plus
3R 19142088..19142273 202..387 100 <- Plus
3R 19145481..19145900 388..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:19 Download gff for BO05640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967321..14967365 19..63 100 <- Plus
arm_3R 14967603..14967740 64..201 100 <- Plus
arm_3R 14967810..14967995 202..387 100 <- Plus
arm_3R 14971203..14971622 388..807 100   Plus

BO05640.5prime Sequence

908 bp (793 high quality bases) assembled on 2005-12-02

> BO05640.5prime
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATG

BO05640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5629-PA 942 CG5629-RA 1..892 17..908 4460 100 Plus
CG5629-PB 942 CG5629-RB 1..892 17..908 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 649..1542 15..908 4470 100 Plus
Ppcs-RC 4134 CG5629-RC 649..1542 15..908 4470 100 Plus
Ppcs-RA 4134 CG5629-RA 649..1542 15..908 4470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145925 586..142 2225 100 Minus
3R 32079331 3R 19142088..19142274 772..586 935 100 Minus
3R 32079331 3R 19141883..19142020 908..771 690 100 Minus
3R 32079331 3R 19147135..19147262 142..15 640 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:34:44 has no hits.

BO05640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:29 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PA 1..892 17..908 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:23 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5629-PB 1..892 17..908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:54:36 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 637..1542 2..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:34 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 637..1542 2..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:34 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19141883..19142018 773..908 100 <- Minus
3R 19142088..19142273 587..772 100 <- Minus
3R 19145481..19145924 143..586 100 <- Minus
3R 19147135..19147274 2..142 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:54:36 Download gff for BO05640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967605..14967740 773..908 100 <- Minus
arm_3R 14967810..14967995 587..772 100 <- Minus
arm_3R 14971203..14971646 143..586 100 <- Minus
arm_3R 14972857..14972996 2..142 96   Minus

BO05640.complete Sequence

973 bp (973 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630110

> BO05640.complete
GAAGTTATCAGTCGACATGACGCACTGGGAGGACTTCTACAACACGCACC
TGCCGCCCGCGGACTTCGAGGACAATCGCTCCCTGCTCAAGGAGTTCTGC
GAACGGCACAACAAGCTCCAGAATCGCATCGTCCTCGTCACGTCCGGTGG
CACCACAGTTCCCCTGGAGCACAATACGGTGCGGTTTGTGGACAATTTTA
GTGCTGGAACGCGTGGCTCCGCCTCGGCGGAATACTTCCTCGACCACGAC
TATGCCGTGATTTTCATGCATCGCCACAAGTCGCTGGAGCCCTTCACGCG
CCACTTCACCGGCCAGCAGTTCTTCGACATGCTGGACATTGCGGACAACA
GCCAGAGTTCGACGATAGCCATCAAACCGGATTCGGTGGACGTGTTTGCT
CCGGTGCTGGCCAAATACAAGATAGCCCGCGAAACGCAGATGATCCTGTA
CGTGAACTTCACCAGCGTGGTGGACTACATGTGGCTGCTCCGCGCCGCCT
GCGAGTGCCTGGCCGCCTTCGAGGAGCGAGCCGTGCTCTACCTAGCCGCA
GCCGTATCCGATTTCTACATACCCGAGGACATGATGCCCACCCACAAAAT
GCAATCAGGAGATGGAGCGCCGACGATTTCGCTGCAGCTGGTGCCAAAAA
TGCTGGCCCCCCTCGCCAGTTTGTGGGTCCCGCACGCCTTTGTGGTGTCC
TTTAAACTGGAAACGGACGAGAGCCTATTGATTGTGAAGGCACGTGACAG
TCTCAACAAATACAAGCACAAGCTGGTCATTGCCAATGTGCTGCAGACAC
GCAAGCATCGCGTGGTGTTCGTCACGCCCACAGATTCCTACGAGCTGCAT
TTGACTCGCGAACAGACGCTGCAAGGACTCGAGATCGAGGAGCCCATCGT
GGCCGATGTGGTGCAAAAGCACGGCGAGTTCATCAGTAACGCTCAACAGC
GCCAAGCAAGCTTTCTAGACCAT

BO05640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 942 CG5629-PD 1..939 17..955 4695 100 Plus
Ppcs-RC 1122 CG5629-PC 1..939 17..955 4695 100 Plus
Ppcs-RA 942 CG5629-PA 1..939 17..955 4695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-RD 2192 CG5629-RD 649..1589 15..955 4705 100 Plus
Ppcs-RC 4134 CG5629-RC 649..1589 15..955 4705 100 Plus
Ppcs-RA 4134 CG5629-RA 649..1589 15..955 4705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19145481..19145925 586..142 2225 100 Minus
3R 32079331 3R 19142088..19142274 772..586 935 100 Minus
3R 32079331 3R 19141879..19142020 912..771 710 100 Minus
3R 32079331 3R 19147135..19147262 142..15 640 100 Minus
3R 32079331 3R 19141599..19141644 955..910 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:57:42 has no hits.

BO05640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:31 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 1..942 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:45 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 634..1586 2..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:26 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 651..1589 17..957 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:31 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
CG5629-RB 634..1586 2..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:43 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcs-RA 651..1589 17..957 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:43 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19141595..19141643 911..957 95 <- Minus
3R 19141881..19142018 773..910 100 <- Minus
3R 19142088..19142273 587..772 100 <- Minus
3R 19145481..19145924 143..586 100 <- Minus
3R 19147135..19147260 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:26 Download gff for BO05640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14967317..14967365 911..957 95 <- Minus
arm_3R 14967603..14967740 773..910 100 <- Minus
arm_3R 14967810..14967995 587..772 100 <- Minus
arm_3R 14971203..14971646 143..586 100 <- Minus
arm_3R 14972857..14972982 17..142 100   Minus

BO05640.pep Sequence

Translation from 16 to 973

> BO05640.pep
MTHWEDFYNTHLPPADFEDNRSLLKEFCERHNKLQNRIVLVTSGGTTVPL
EHNTVRFVDNFSAGTRGSASAEYFLDHDYAVIFMHRHKSLEPFTRHFTGQ
QFFDMLDIADNSQSSTIAIKPDSVDVFAPVLAKYKIARETQMILYVNFTS
VVDYMWLLRAACECLAAFEERAVLYLAAAVSDFYIPEDMMPTHKMQSGDG
APTISLQLVPKMLAPLASLWVPHAFVVSFKLETDESLLIVKARDSLNKYK
HKLVIANVLQTRKHRVVFVTPTDSYELHLTREQTLQGLEIEEPIVADVVQ
KHGEFISNAQQRQASFLDH

BO05640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcs-PD 313 CG5629-PD 1..313 1..313 1625 100 Plus
Ppcs-PA 313 CG5629-PA 1..313 1..313 1625 100 Plus
Ppcs-PC 373 CG5629-PC 1..313 1..313 1625 100 Plus