Clone Sequence Records
BO05641.3prime Sequence
322 bp (304 high quality bases) assembled on 2005-12-02
> BO05641.3prime
ATGGTCTAGAAAGCTTGCGTCGGTGAATTTGCGATTGACGTTGCGGCCGA
AAAGTGCGTTACGAATCTCGGGCACCAGCTGCTGCGAAATGAGGTCTAAT
CTGGACTCCAGCGTATTGGGCACCTTGATGCGTCCGTTGAGGGCCAGCAG
CTCAACACCACCGCAGGTATCAGCAGAGAGGAAGTCTTTCTCGTCGATGA
ACAGCTCGACGTTCTGATTGATCTGGGCCTTGTATTGCTCCACAGCGGCA
GGCAGGACGTTACGTACCAGGGGGACGTCCACCTCGCGGCAGCGCAGGAT
CACCTTGGGCTCCATGATCTGG
BO05641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1088-PA | 681 | Vha26-RA | 375..678 | 322..19 | 1520 | 100 | Minus |
CG1088-PB | 681 | Vha26-RB | 375..678 | 322..19 | 1520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 618..921 | 322..19 | 1520 | 100 | Minus |
Vha26-RB | 2171 | CG1088-RB | 520..823 | 322..19 | 1520 | 100 | Minus |
Vha26-RA | 2269 | CG1088-RA | 618..921 | 322..19 | 1520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592987..5593188 | 322..121 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 5593245..5593351 | 125..19 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:56:22 has no hits.
BO05641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:30 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-PA | 375..681 | 15..322 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:25 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1088-PB | 375..681 | 15..322 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:39 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 618..927 | 11..322 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:23 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 618..927 | 11..322 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:23 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592987..5593185 | 124..322 | 100 | -> | Minus |
3R | 5593247..5593357 | 11..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:39 Download gff for
BO05641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1418709..1418907 | 124..322 | 100 | -> | Minus |
arm_3R | 1418969..1419079 | 11..123 | 96 | | Minus |
BO05641.5prime Sequence
399 bp (350 high quality bases) assembled on 2005-12-02
> BO05641.5prime
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCCAGCTCATCGTCCAGGGCCTGTTCCAGATCAT
BO05641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1088-PA | 681 | Vha26-RA | 1..383 | 17..399 | 1890 | 99.7 | Plus |
CG1088-PB | 681 | Vha26-RB | 1..383 | 17..399 | 1890 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 234..626 | 7..399 | 1920 | 99.2 | Plus |
Vha26-RB | 2171 | CG1088-RB | 136..528 | 7..399 | 1920 | 99.2 | Plus |
Vha26-RA | 2269 | CG1088-RA | 234..626 | 7..399 | 1920 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592565..5592784 | 47..266 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 5592853..5592995 | 257..399 | 685 | 98.6 | Plus |
3R | 32079331 | 3R | 5591996..5592038 | 7..49 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2015-02-13 05:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 707..732 | 335..360 | 103 | 88.5 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 704..729 | 335..360 | 103 | 88.5 | Plus |
BO05641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:31 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-PA | 1..383 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:26 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1088-PB | 1..383 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:16 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 229..626 | 2..399 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:40 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 229..626 | 2..399 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:40 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592568..5592780 | 50..262 | 100 | -> | Plus |
3R | 5592859..5592995 | 263..399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:16 Download gff for
BO05641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1418290..1418502 | 50..262 | 100 | -> | Plus |
arm_3R | 1418581..1418717 | 263..399 | 99 | | Plus |
BO05641.complete Sequence
712 bp assembled on 2008-08-15
GenBank Submission: FJ630111
> BO05641.complete
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCTGTTCCAGATCATG
GAGCCCAAGGTGATCCTGCGCTGCCGCGAGGTGGACGTCCCCCTGGTACG
TAACGTCCTGCCTGCCGCTGTGGAGCAATACAAGGCCCAGATCAATCAGA
ACGTCGAGCTGTTCATCGACGAGAAAGACTTCCTCTCTGCTGATACCTGC
GGTGGTGTTGAGCTGCTGGCCCTCAACGGACGCATCAAGGTGCCCAATAC
GCTGGAGTCCAGATTAGACCTCATTTCGCAGCAGCTGGTGCCCGAGATTC
GTAACGCACTTTTCGGCCGCAACGTCAATCGCAAATTCACCGACGCAAGC
TTTCTAGACCAT
BO05641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 681 | CG1088-PC | 1..678 | 17..694 | 3390 | 100 | Plus |
Vha26-RB | 681 | CG1088-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
Vha26-RA | 681 | CG1088-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-RC | 2926 | CG1088-RC | 234..921 | 7..694 | 3410 | 99.7 | Plus |
Vha26-RB | 2171 | CG1088-RB | 136..823 | 7..694 | 3410 | 99.7 | Plus |
Vha26-RA | 2269 | CG1088-RA | 234..921 | 7..694 | 3410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5592853..5593188 | 257..592 | 1665 | 99.7 | Plus |
3R | 32079331 | 3R | 5592565..5592784 | 47..266 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 5593245..5593351 | 588..694 | 535 | 100 | Plus |
3R | 32079331 | 3R | 5591996..5592038 | 7..49 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:03 has no hits.
BO05641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:33 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RB | 163..861 | 2..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:29 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 244..921 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:11 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RB | 178..855 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:40 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha26-RA | 244..921 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:40 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5592006..5592038 | 17..49 | 100 | -> | Plus |
3R | 5592568..5592780 | 50..262 | 100 | -> | Plus |
3R | 5592859..5593185 | 263..589 | 100 | -> | Plus |
3R | 5593247..5593351 | 590..696 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:29 Download gff for
BO05641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1418290..1418502 | 50..262 | 100 | -> | Plus |
arm_3R | 1417728..1417760 | 17..49 | 100 | -> | Plus |
arm_3R | 1418581..1418907 | 263..589 | 100 | -> | Plus |
arm_3R | 1418969..1419073 | 590..696 | 98 | | Plus |
BO05641.pep Sequence
Translation from 16 to 712
> BO05641.pep
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTDASFLDH
BO05641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha26-PC | 226 | CG1088-PC | 1..226 | 1..226 | 1117 | 100 | Plus |
Vha26-PB | 226 | CG1088-PB | 1..226 | 1..226 | 1117 | 100 | Plus |
Vha26-PA | 226 | CG1088-PA | 1..226 | 1..226 | 1117 | 100 | Plus |