Clone BO05641 Report

Search the DGRC for BO05641

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptVha26-RA
Protein status:BO05641.pep: Imported from assembly
Sequenced Size:712

Clone Sequence Records

BO05641.3prime Sequence

322 bp (304 high quality bases) assembled on 2005-12-02

> BO05641.3prime
ATGGTCTAGAAAGCTTGCGTCGGTGAATTTGCGATTGACGTTGCGGCCGA
AAAGTGCGTTACGAATCTCGGGCACCAGCTGCTGCGAAATGAGGTCTAAT
CTGGACTCCAGCGTATTGGGCACCTTGATGCGTCCGTTGAGGGCCAGCAG
CTCAACACCACCGCAGGTATCAGCAGAGAGGAAGTCTTTCTCGTCGATGA
ACAGCTCGACGTTCTGATTGATCTGGGCCTTGTATTGCTCCACAGCGGCA
GGCAGGACGTTACGTACCAGGGGGACGTCCACCTCGCGGCAGCGCAGGAT
CACCTTGGGCTCCATGATCTGG

BO05641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1088-PA 681 Vha26-RA 375..678 322..19 1520 100 Minus
CG1088-PB 681 Vha26-RB 375..678 322..19 1520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 618..921 322..19 1520 100 Minus
Vha26-RB 2171 CG1088-RB 520..823 322..19 1520 100 Minus
Vha26-RA 2269 CG1088-RA 618..921 322..19 1520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592987..5593188 322..121 1010 100 Minus
3R 32079331 3R 5593245..5593351 125..19 535 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:56:22 has no hits.

BO05641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:30 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-PA 375..681 15..322 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:25 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1088-PB 375..681 15..322 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:39 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 618..927 11..322 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:23 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 618..927 11..322 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:23 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5592987..5593185 124..322 100 -> Minus
3R 5593247..5593357 11..123 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:39 Download gff for BO05641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1418709..1418907 124..322 100 -> Minus
arm_3R 1418969..1419079 11..123 96   Minus

BO05641.5prime Sequence

399 bp (350 high quality bases) assembled on 2005-12-02

> BO05641.5prime
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCCAGCTCATCGTCCAGGGCCTGTTCCAGATCAT

BO05641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1088-PA 681 Vha26-RA 1..383 17..399 1890 99.7 Plus
CG1088-PB 681 Vha26-RB 1..383 17..399 1890 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 234..626 7..399 1920 99.2 Plus
Vha26-RB 2171 CG1088-RB 136..528 7..399 1920 99.2 Plus
Vha26-RA 2269 CG1088-RA 234..626 7..399 1920 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592565..5592784 47..266 1100 100 Plus
3R 32079331 3R 5592853..5592995 257..399 685 98.6 Plus
3R 32079331 3R 5591996..5592038 7..49 185 95.3 Plus
Blast to na_te.dros performed 2015-02-13 05:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 707..732 335..360 103 88.5 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 704..729 335..360 103 88.5 Plus

BO05641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:31 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-PA 1..383 17..399 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:26 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1088-PB 1..383 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:16 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 229..626 2..399 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:40 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 229..626 2..399 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:40 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5592568..5592780 50..262 100 -> Plus
3R 5592859..5592995 263..399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:16 Download gff for BO05641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1418290..1418502 50..262 100 -> Plus
arm_3R 1418581..1418717 263..399 99   Plus

BO05641.complete Sequence

712 bp assembled on 2008-08-15

GenBank Submission: FJ630111

> BO05641.complete
GAAGTTATCAGTCGACATGGCACTGAGCGATGCTGATGTACAAAAGCAGA
TCAAGCACATGATGGCGTTCATTGAGCAGGAGGCCAATGAGAAAGCCGAG
GAGATCGATGCCAAGGCCGAGGAGGAGTTCAACATTGAGAAGGGACGCCT
GGTCCAGCAGCAGCGTCTCAAGATCATGGAATACTACGAGAAGAAGGAGA
AGCAAGTTGAGCTGCAGAAGAAGATTCAGTCCTCCAACATGCTCAACCAG
GCTCGTCTGAAGGTGCTGAAAGTGCGCGAGGACCATGTGAGCAGCGTGCT
GGATGATGCCCGCAAGCGTCTCGGCGAGGTCACCAAGAATCAGTCCGAGT
ACGAGACTGTGCTGACCAAGCTCATCGTCCAGGGCCTGTTCCAGATCATG
GAGCCCAAGGTGATCCTGCGCTGCCGCGAGGTGGACGTCCCCCTGGTACG
TAACGTCCTGCCTGCCGCTGTGGAGCAATACAAGGCCCAGATCAATCAGA
ACGTCGAGCTGTTCATCGACGAGAAAGACTTCCTCTCTGCTGATACCTGC
GGTGGTGTTGAGCTGCTGGCCCTCAACGGACGCATCAAGGTGCCCAATAC
GCTGGAGTCCAGATTAGACCTCATTTCGCAGCAGCTGGTGCCCGAGATTC
GTAACGCACTTTTCGGCCGCAACGTCAATCGCAAATTCACCGACGCAAGC
TTTCTAGACCAT

BO05641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 681 CG1088-PC 1..678 17..694 3390 100 Plus
Vha26-RB 681 CG1088-PB 1..678 17..694 3390 100 Plus
Vha26-RA 681 CG1088-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-RC 2926 CG1088-RC 234..921 7..694 3410 99.7 Plus
Vha26-RB 2171 CG1088-RB 136..823 7..694 3410 99.7 Plus
Vha26-RA 2269 CG1088-RA 234..921 7..694 3410 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5592853..5593188 257..592 1665 99.7 Plus
3R 32079331 3R 5592565..5592784 47..266 1100 100 Plus
3R 32079331 3R 5593245..5593351 588..694 535 100 Plus
3R 32079331 3R 5591996..5592038 7..49 185 95.3 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:03 has no hits.

BO05641.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:33 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 163..861 2..702 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:29 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 244..921 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:11 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RB 178..855 17..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:40 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
Vha26-RA 244..921 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:40 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5592006..5592038 17..49 100 -> Plus
3R 5592568..5592780 50..262 100 -> Plus
3R 5592859..5593185 263..589 100 -> Plus
3R 5593247..5593351 590..696 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:29 Download gff for BO05641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1418290..1418502 50..262 100 -> Plus
arm_3R 1417728..1417760 17..49 100 -> Plus
arm_3R 1418581..1418907 263..589 100 -> Plus
arm_3R 1418969..1419073 590..696 98   Plus

BO05641.pep Sequence

Translation from 16 to 712

> BO05641.pep
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQR
LKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARK
RLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPA
AVEQYKAQINQNVELFIDEKDFLSADTCGGVELLALNGRIKVPNTLESRL
DLISQQLVPEIRNALFGRNVNRKFTDASFLDH

BO05641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vha26-PC 226 CG1088-PC 1..226 1..226 1117 100 Plus
Vha26-PB 226 CG1088-PB 1..226 1..226 1117 100 Plus
Vha26-PA 226 CG1088-PA 1..226 1..226 1117 100 Plus