Clone Sequence Records
BO05645.3prime Sequence
906 bp (770 high quality bases) assembled on 2005-12-02
> BO05645.3prime
ATGGTCTAGAAAGCTTGCTTGTTGCTCCTGCTGATGCGTCACCAGTCCCA
TGTCCTCCTGCACTTTCAAGGGCAGAGGCAGTGGTCTCTGTGGCCAAGTG
CGTCGCTGGAGCAGCATTTCCGCCCTGGCCAACTGGCGCTGCAGTGCCTC
GATGGTGGGATAAATGTGCTGCTCCACAAACTCCGTCACCGTGTACTCGT
CGTATACCTCCCACAGCAGCTGCTGTGCCTCCCTCGCCATCGCCCGCAGC
TCCTCGATCAACATCGGCGTCCTCGCAGTCAGTTCGCGCACCCTCAGCGG
CGAACTGAAGTTGTGCCGAACATTGTAGTCGGAGAGCCAGGCGCTCTGGT
CCCGGGTCTGCTGCAAATAGAGTCGGATCTCGGCCAGCTTGTCAAACAGG
CGCAGGGCATATTTGAAGACCAGGTGACCCGGATAGTTGCAGACAGCAAA
GAGCTGACTGTGATGGGCATTCGGATGCAGTTCCAGCCAGGGTCGACCCG
ATCGCCGACTGTCCGGCTGGAAGACGCACTGCAGCACACGCAGCAGCTCA
TTGTCCCGCGGATTAGTGCTGAAGTAGCCCTTGGAGACGGTCGACAGCGA
CGTCATCAGACTGGGAATGCCTACTGGCAGAAGTTCACAGAGTACTGCGA
AATGATCATACCGCTGCCATCCGGTCAGTGCCAGACCTCTTAATCCCTTT
GAAAAGCGTCCGCCTTCCTTGGCGATCACTGCCAGCCATCGGATGTTGTT
CTCAAGATGATGCTGCAGCGGCGGCACCAACAAGCTCTCACCAAAGGCTC
CCTTTAAAGCCGACGCCGTCCAGGCGCTGGGAAAGACCTTGGCATAGGTA
ATCCACAGCTGTGGCTGAATGAATCGGTATATGTCACTGGCATACACCCA
AACCAT
BO05645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-PA | 2127 | CG7985-RA | 1237..2124 | 906..19 | 4365 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-RB | 2593 | CG7985-RB | 1357..2244 | 906..19 | 4395 | 99.7 | Minus |
| CG7985-RA | 2609 | CG7985-RA | 1373..2260 | 906..19 | 4395 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18213698..18214585 | 906..19 | 4395 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:31:04 has no hits.
BO05645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:37 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-PA | 1237..2127 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:37 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-PA | 1237..2127 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:04 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 1373..2260 | 19..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:22 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 1373..2260 | 19..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:22 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18213698..18214584 | 20..906 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:04 Download gff for
BO05645.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14039420..14040306 | 20..906 | 99 | -> | Minus |
BO05645.5prime Sequence
803 bp (801 high quality bases) assembled on 2005-12-02
> BO05645.5prime
GAAGTTATCAGTCGACATGCACTCAAATCTTTGGATATTTATTTGGCGCC
GGAAACTTTCCTTCCTGCTCGTCGTGTCTGGCCTGGTGCTTCTCGGCCTC
TGGACATGGGCCATACTAATCGATACGACAGCCTCAGCACAGCCTCCTGC
CGCCCCCATTTCCAATTCTGAGCGCCAGCAGCAGCAGCAGCAGTCCACGG
GTTACCAGCAGGTGCACATCATCCAGAAGCTTATCGAGCAGGCAAACCGG
GTGCTGCGTGCCGAGCGGCTCAAGGATAACGCTGTCGAGAAATCGCCATC
GCCAGTCCAGCGGCTGGGAAACGTGCGTTCCCTGCGACCCACACAGGCCA
AGAAGGCGCCGCTGCCCATGTCCGAGAGCTTCCTGTTCGAGCAGGAGCGC
CTCAAGATTCTGGAGCAGCAGCAGCGCCAGAGAAACGCCGGTATGGAGGA
ACTGAACGCCAATGCCGAGGACGAGCGAATGCTCAGTTCGGCGGAGCGAC
AGACTCAGTACGAGCACGAGCTTCAGAGGATGGGCGTGCCGGTGGTGGCT
GGCATCGGGCCGGATGGTCCGAGAGCTCCCGCCGAGCGTCTCGTTCATCT
GGACTTGAAGGGTGCTCCGCCTAAGCTAAGCTTTCTCAAGCAACTGCTGC
CCGTGCTGCGGGCACTGGGAGCCACTGGTCTGCTCATAGAGTACGAGGAC
ATGTTTCCCTACAGCGGAGTTCTTCAGCCGCTGGCCGCGCACAATGCCTA
CAAGGAGGACGAACTGCGGGACTTCCTCGAGTGCGCTGCCCTTCATGGAC
TGA
BO05645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-PA | 2127 | CG7985-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-RB | 2593 | CG7985-RB | 121..907 | 17..803 | 3935 | 100 | Plus |
| CG7985-RA | 2609 | CG7985-RA | 137..923 | 17..803 | 3935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18212409..18213162 | 17..770 | 3770 | 100 | Plus |
| 3R | 32079331 | 3R | 18213209..18213248 | 764..803 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:44:07 has no hits.
BO05645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:38 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:38 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:53 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..922 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:03 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..922 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:03 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18212405..18213161 | 11..769 | 99 | -> | Plus |
| 3R | 18213215..18213247 | 770..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:53 Download gff for
BO05645.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14038127..14038883 | 11..769 | 99 | -> | Plus |
| arm_3R | 14038937..14038969 | 770..802 | 100 | | Plus |
BO05645.complete Sequence
2158 bp assembled on 2008-08-14
GenBank Submission: FJ630113
> BO05645.complete
GAAGTTATCAGTCGACATGCACTCAAATCTTTGGATATTTATTTGGCGCC
GGAAACTTTCCTTCCTGCTCGTCGTGTCTGGCCTGGTGCTTCTCGGCCTC
TGGACATGGGCCATACTAATCGATACGACAGCCTCAGCACAGCCTCCTGC
CGCCCCCATTTCCAATTCTGAGCGCCAGCAGCAGCAGCAGCAGTCCACGG
GTTACCAGCAGGTGCACATCATCCAGAAGCTTATCGAGCAGGCAAACCGG
GTGCTGCGTGCCGAGCGGCTCAAGGATAACGCTGTCGAGAAATCGCCATC
GCCAGTCCAGCGGCTGGGAAACGTGCGTTCCCTGCGACCCACACAGGCCA
AGAAGGCGCCGCTGCCCATGTCCGAGAGCTTCCTGTTCGAGCAGGAGCGC
CTCAAGATTCTGGAGCAGCAGCAGCGCCAGAGAAACGCCGGTATGGAGGA
ACTGAACGCCAATGCCGAGGACGAGCGAATGCTCAGTTCGGCGGAGCGAC
AGACTCAGTACGAGCACGAGCTTCAGAGGATGGGCGTGCCGGTGGTGGCT
GGCATCGGGCCGGATGGTCCGAGAGCTCCCGCCGAGCGTCTCGTTCATCT
GGACTTGAAGGGTGCTCCGCCTAAGCTAAGCTTTCTCAAGCAACTGCTGC
CCGTGCTGCGGGCACTGGGAGCCACTGGTCTGCTCATAGAGTACGAGGAC
ATGTTTCCCTACAGCGGAGTTCTTCAGCCGCTGGCCGCGCACAATGCCTA
CAAGGAGGACGAACTGCGGGACTTCCTCGAGTGCGCTGCCCTTCATGGAC
TGAGCGTAATGCCTCTCGTTCAAACCTTTGGGCACATGGAATACGTCCTC
AAACTCTCGGGCTTCGAGCAGCTGCGTGAGCTGGCTGAGAGTCCACAGTC
GATTTGCCCCAGCCAGCCACAGAGCATGGCCCTGCTGGAGCAGATGCTCA
CCCAAGTGATCGAATTGCATTCGCAGTGCTTGGGTCAGGCGACGCCCGCC
ACCAACGTTCCCGTGGCGCGAATCAGGTTCACCCATATTCACATCGGTTG
TGACGAGGTGCAGCGCATGGGCGAGTGCACTACATGCCGCCAGAGGCTAC
GCAGTGAGCTCTTCCTCTCGCACGTGGTAAGCATGGCGCACTTCATTCGC
CGCCAGTGGCCGCACCTGGGTGTGGTAATCTGGGACGACCAGTTGCGATC
GATGTCCCTCAGCGAGCTGCAGCACTCGCAAGTGGGCAGCTACGTGGAGC
CGATGGTTTGGGTGTATGCCAGTGACATATACCGATTCATTCAGCCACAG
CTGTGGGATACCTATGCCAAGGTCTTTCCCAGCGCCTGGACGGCGTCGGC
TTTTAAGGGAGCCTTTGGTGAGAGCTTGTTGGTGCCGCCGCTGCAGCATC
ATCTTGAGAACAACATCCGATGGCTGGCAGTGATCGCCAAGGAAGGCGGA
CGCTTTTCAAAGGGATTAAGAGGTCTGGCACTGACCGGATGGCAGCGGTA
TGATCATTTCGCAGTACTCTGTGAACTTCTGCCAGTAGGCATTCCCAGTC
TGATGACGTCGCTGTCGACCGTCTCCAAGGGCTACTTCAGCACTAATCCG
CGGGACAATGAGCTGCTGCGTGTGCTGCAGTGCGTCTTCCAGCCGGACAG
TCGGCGATCGGGTCGACCCTGGCTGGAACTGCATCCGAATGCCCATCACA
GTCAGCTCTTTGCTGTCTGCAACTATCCGGGTCACCTGGTCTTCAAATAT
GCCCTGCGCCTGTTTGACAAGCTGGCCGAGATCCGACTCTATTTGCAGCA
GACCCGGGACCAGAGCGCCTGGCTCTCCGACTACAATGTTCGGCACAACT
TCAGTTCGCCGCTGAGGGTGCGCGAACTGACTGCGAGGACGCCGATGTTG
ATCGAGGAGCTGCGGGCGATGGCGAGGGAGGCACAGCAGCTGCTGTGGGA
GGTATACGACGAGTACACGGTGACGGAGTTTGTGGAGCAGCACATTTATC
CCACCATCGAGGCACTGCAGCGCCAGTTGGCCAGGGCGGAAATGCTGCTC
CAGCGACGCACTTGGCCACAGAGACCACTGCCTCTGCCCTTGAAAGTGCA
GGAGGACATGGGACTGGTGACGCATCAGCAGGAGCAACAAGCAAGCTTTC
TAGACCAT
BO05645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-RB | 2127 | CG7985-PB | 1..2124 | 17..2140 | 10620 | 100 | Plus |
| CG7985-RA | 2127 | CG7985-PA | 1..2124 | 17..2140 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-RB | 2593 | CG7985-RB | 121..2244 | 17..2140 | 10620 | 100 | Plus |
| CG7985-RA | 2609 | CG7985-RA | 137..2260 | 17..2140 | 10620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18213209..18214585 | 764..2140 | 6870 | 99.9 | Plus |
| 3R | 32079331 | 3R | 18212409..18213162 | 17..770 | 3770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:58 has no hits.
BO05645.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:59 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..2260 | 17..2140 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:28 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..2260 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:36 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..2260 | 17..2142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:35 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..2260 | 17..2142 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:35 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18212409..18213161 | 17..769 | 100 | -> | Plus |
| 3R | 18213215..18214585 | 770..2142 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:28 Download gff for
BO05645.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14038131..14038883 | 17..769 | 100 | -> | Plus |
| arm_3R | 14038937..14040307 | 770..2142 | 99 | | Plus |
BO05645.pep Sequence
Translation from 16 to 2158
> BO05645.pep
MHSNLWIFIWRRKLSFLLVVSGLVLLGLWTWAILIDTTASAQPPAAPISN
SERQQQQQQSTGYQQVHIIQKLIEQANRVLRAERLKDNAVEKSPSPVQRL
GNVRSLRPTQAKKAPLPMSESFLFEQERLKILEQQQRQRNAGMEELNANA
EDERMLSSAERQTQYEHELQRMGVPVVAGIGPDGPRAPAERLVHLDLKGA
PPKLSFLKQLLPVLRALGATGLLIEYEDMFPYSGVLQPLAAHNAYKEDEL
RDFLECAALHGLSVMPLVQTFGHMEYVLKLSGFEQLRELAESPQSICPSQ
PQSMALLEQMLTQVIELHSQCLGQATPATNVPVARIRFTHIHIGCDEVQR
MGECTTCRQRLRSELFLSHVVSMAHFIRRQWPHLGVVIWDDQLRSMSLSE
LQHSQVGSYVEPMVWVYASDIYRFIQPQLWDTYAKVFPSAWTASAFKGAF
GESLLVPPLQHHLENNIRWLAVIAKEGGRFSKGLRGLALTGWQRYDHFAV
LCELLPVGIPSLMTSLSTVSKGYFSTNPRDNELLRVLQCVFQPDSRRSGR
PWLELHPNAHHSQLFAVCNYPGHLVFKYALRLFDKLAEIRLYLQQTRDQS
AWLSDYNVRHNFSSPLRVRELTARTPMLIEELRAMAREAQQLLWEVYDEY
TVTEFVEQHIYPTIEALQRQLARAEMLLQRRTWPQRPLPLPLKVQEDMGL
VTHQQEQQASFLDH
BO05645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-PB | 708 | CG7985-PB | 1..708 | 1..708 | 3689 | 100 | Plus |
| CG7985-PA | 708 | CG7985-PA | 1..708 | 1..708 | 3689 | 100 | Plus |
