Clone BO05646 Report

Search the DGRC for BO05646

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptAppl-RA
Protein status:BO05646.pep: Imported from assembly
Sequenced Size:2695

Clone Sequence Records

BO05646.3prime Sequence

917 bp (817 high quality bases) assembled on 2005-12-02

> BO05646.3prime
ATGGTCTAGAAAGCTTGCCTCTTTCACTTCGAAATACTTGTAGGTCGGAT
TCTCGTACCCATTGATCTGCATGTTGGGCACGATCTTCTCCTCGCGCACA
ATGGGATGGTGTGTTGTGACGTTCTGGTCGACCTCGATGAAGCCCTGGGC
GTGCGGCGAGCGCGATGTTCGCCATTTGGCCACGGCCACGCCAACGAAAA
CGGCCGCCATCAGGGCGATCCCGGCGAAGGAGAGCGTGAAGTAGACGTTG
CGGCCCTCTTTGGCCGCGTGTGCATGTTGCGCGAACTCGCGGCGCAGCGA
GAAGCTCGATTCGCGGTGGCCCAGGTCGTGGGTCATGAAGTGCTGCACCT
GCGGCTCGGCCTCCTGGTGGGCGACGGCGGCGGCTACGTCCTCCACTGCC
CGCTGGACGGCATCGTCGTCGACCGTTGGCAGCACGGTCTGCACCTTGGT
GCTGCTCACTGTTGCCTCCCCATACTCAGTGTCCGACAGATCCTTCTCGC
TTTTGGTGGTCTCTAGGTTGGGATTGGCCGCTGTGACCAGAGCTGCGTCG
GGACCCAGCTCCTTGCCGGGAAGGCTCTTTTCCTGCTGCTGCTGCTGCGC
CTGCGATTGGGTTGACGACTGGGTCGGCTGGGACTGCTGCTCGGCCACCT
GTGACTTGAGCATGTCGTCCACCTTTTTGGCCTCCAGGCGCAGCTTCTCC
TCGCGCAGTTTTTCCCGCTCAGCGGCACGCTGCTCCTTGCGCTGCTTCTC
CGCCAGCCGTAGTCGCTCTTTCTCGGCCACCTTGCGCTCGATCTCGACGC
GGTACTTGTCCAGAATGCCGGCCTCCGCCTCCTCGCTCATTCCAGCGAGG
AGGCGGGAATGTCATCCTTGCTGCGCAGTGCCAGAATGTAGTCATTCATC
AGCTGGGCAATCTTGGG

BO05646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7727-PA 2664 Appl-RA 1837..2661 843..19 4125 100 Minus
CG7727-PA 2664 Appl-RA 1763..1837 916..842 350 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RF 5425 CG7727-RF 1972..2870 916..19 4455 99.8 Minus
Appl-RE 6324 CG7727-RE 1957..2855 916..19 4455 99.8 Minus
Appl-RD 5425 CG7727-RD 1972..2870 916..19 4455 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 574416..574878 916..455 2250 99.6 Minus
X 23542271 X 575167..575350 307..124 920 100 Minus
X 23542271 X 574940..575089 456..307 750 100 Minus
X 23542271 X 575466..575575 128..19 550 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:44:16 has no hits.

BO05646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:40 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-PA 1761..2664 15..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:40 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7727-PA 1761..2664 15..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:32 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RD 2001..2906 13..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:37 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RD 1970..2875 13..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:37 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
X 575168..575350 124..306 100 -> Minus
X 575471..575580 13..123 98   Minus
X 574414..574878 455..917 99 -> Minus
X 574942..575089 307..454 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:32 Download gff for BO05646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 468975..469122 307..454 100 -> Minus
arm_X 468447..468911 455..917 99 -> Minus
arm_X 469201..469383 124..306 100 -> Minus
arm_X 469504..469613 13..123 98   Minus

BO05646.5prime Sequence

909 bp (819 high quality bases) assembled on 2005-12-02

> BO05646.5prime
GAAGTTATCAGTCGACATGTGCGCCGCGCTGCGTCGTAATTTGTTGCTGA
GGAGCCTCTGGGTCGTCCTGGCCATTGGCACTGCTCAGGTTCAGGCCGCA
TCGCCGCGATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAAT
CTACCAGCCGCAGTATCTTTCCGAGGAGGGACGCTGGGTGACGGACCTTA
GCAAGAAGACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTT
GATTACTGCAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGA
GTCGTCCCACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGA
ATGCGGCTAAGTGCAAGGGATCCCACCGATGGATCAAGCCATTCCGCTGT
CTCGGACCATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTT
CGACCACATCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACC
AAACCGGAGCAGCCGCTTGCCAGGAGCGCGGAATGCAGATGCGCAGCTTC
GCCATGCTTCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGT
CTGCTGTCCCAAGCACTTCAAAACCGATGAAATTCATGTAAAGAAGACCG
ACTTGCCGGTGATGCCGGCAGCTCAGATCAATAGCGCCAATGACGAGCTG
GTGATGAATGACGAAGACGACAGCAACGACTCGAACTACTCGAAGGATGC
CAATGAAGACGATCTGGACGATGAGGATGATTTGATGGGTGATGATGAGG
AGGACGATATGGTGGCGGATGAGGCAGCTACCGCAGGCGGAAGCCCCACA
CCGGTTCCTCAGGTGACTCAAATAGCGGATCTTTGGATGACATAAATGCG
GAGTACGAT

BO05646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7727-PA 2664 Appl-RA 1..832 17..848 4160 100 Plus
CG7727-PA 2664 Appl-RA 833..894 848..909 310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RE 6324 CG7727-RE 207..1100 17..909 4445 99.9 Plus
Appl-RB 6331 CG7727-RB 193..1086 17..909 4445 99.9 Plus
Appl-RA 5422 CG7727-RA 207..1100 17..909 4445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 571427..571713 624..909 1385 99.7 Plus
X 23542271 X 571133..571352 404..623 1100 100 Plus
X 23542271 X 560601..560777 90..266 885 100 Plus
X 23542271 X 570860..571001 264..405 710 100 Plus
X 23542271 X 531799..531877 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:31:25 has no hits.

BO05646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:40 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:41 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7727-PA 1..894 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:06 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 228..1131 10..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:26 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 197..1100 10..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:26 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
X 571427..571713 624..909 99   Plus
X 531789..531876 10..94 96 -> Plus
X 560606..560776 95..265 100 -> Plus
X 570862..571000 266..404 100 -> Plus
X 571134..571352 405..623 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:06 Download gff for BO05646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 425822..425909 10..94 96 -> Plus
arm_X 454639..454809 95..265 100 -> Plus
arm_X 464895..465033 266..404 100 -> Plus
arm_X 465167..465385 405..623 100 -> Plus
arm_X 465460..465746 624..909 99   Plus

BO05646.complete Sequence

2695 bp assembled on 2008-08-14

GenBank Submission: FJ630114

> BO05646.complete
GAAGTTATCAGTCGACATGTGCGCCGCGCTGCGTCGTAATTTGTTGCTGA
GGAGCCTCTGGGTCGTCCTGGCCATTGGCACTGCTCAGGTTCAGGCCGCA
TCGCCGCGATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAAT
CTACCAGCCGCAGTATCTTTCCGAGGAGGGACGCTGGGTGACGGACCTTA
GCAAGAAGACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTT
GATTACTGCAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGA
GTCGTCCCACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGA
ATGCGGCTAAGTGCAAGGGATCCCACCGATGGATCAAGCCATTCCGCTGT
CTCGGACCATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTT
CGACCACATCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACC
AAACCGGAGCAGCCGCTTGCCAGGAGCGCGGAATGCAGATGCGCAGCTTC
GCCATGCTTCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGT
CTGCTGTCCCAAGCACTTCAAAACCGATGAAATTCATGTAAAGAAGACCG
ACTTGCCGGTGATGCCGGCAGCTCAGATCAATAGCGCCAATGACGAGCTG
GTGATGAATGACGAAGACGACAGCAACGACTCGAACTACTCGAAGGATGC
CAATGAAGACGATCTGGACGATGAGGATGATTTGATGGGTGATGATGAGG
AGGACGATATGGTGGCGGATGAGGCAGCTACCGCAGGCGGAAGCCCCAAC
ACCGGTTCCTCAGGTGACTCAAATAGCGGATCTTTGGATGACATAAATGC
GGAGTACGATAGCGGAGAGGAGGGTGACAACTACGAGGAGGACGGTGCTG
GTTCCGAAAGCGAGGCTGAGGTTGAGGCCTCCTGGGATCAGAGCGGAGGG
GCGAAGGTTGTGTCCCTAAAAAGCGATTCCTCATCCCCGTCTAGCGCTCC
GGTTGCTCCCGCCCCCGAGAAGGCACCTGTGAAGTCCGAATCGGTCACGA
GCACTCCTCAGCTGTCTGCCTCTGCCGCTGCTTTTGTAGCTGCCAATTCT
GGAAACTCGGGAACCGGAGCCGGAGCACCACCATCCACTGCACAACCCAC
ATCGGATCCCTACTTCACCCATTTTGATCCGCACTACGAGCACCAGAGCT
ACAAAGTAAGTCAGAAACGCCTTGAGGAATCGCACCGCGAGAAGGTCACG
CGCGTTATGAAGGACTGGTCCGATCTCGAGGAGAAGTACCAGGACATGCG
CCTAGCGGATCCCAAGGCAGCCCAGTCATTTAAGCAGCGGATGACGGCTC
GCTTCCAGACTTCTGTTCAGGCACTCGAGGAAGAAGGCAACGCCGAGAAG
CACCAGCTGGCCGCCATGCACCAGCAGCGCGTTTTGGCCCACATCAACCA
GCGGAAGCGCGAGGCCATGACCTGCTACACCCAGGCCCTGACTGAGCAGC
CCCCGAATGCCCACCACGTTGAGAAGTGTCTACAGAAGCTGCTGCGCGCC
CTGCACAAGGACCGGGCCCACGCCTTGGCCCACTACCGGCACCTATTGAA
CTCTGGAGGACCTGGTGGACTAGAAGCAGCTGCTTCGGAGCGTCCACGCA
CGCTGGAGCGCCTAATCGACATCGATAGAGCCGTAAACCAGTCGATGACC
ATGCTCAAGCGCTATCCGGAGCTCTCCGCCAAGATTGCCCAGCTGATGAA
TGACTACATTCTGGCACTGCGCAGCAAGGATGACATTCCCGGCTCCTCGC
TGGGAATGAGCGAGGAGGCGGAGGCCGGCATTCTGGACAAGTACCGCGTC
GAGATCGAGCGCAAGGTGGCCGAGAAAGAGCGACTACGGCTGGCGGAGAA
GCAGCGCAAGGAGCAGCGTGCCGCTGAGCGGGAAAAACTGCGCGAGGAGA
AGCTGCGCCTGGAGGCCAAAAAGGTGGACGACATGCTCAAGTCACAGGTG
GCCGAGCAGCAGTCCCAGCCGACCCAGTCGTCAACCCAATCGCAGGCGCA
GCAGCAGCAGCAGGAAAAGAGCCTTCCCGGCAAGGAGCTGGGTCCCGACG
CAGCTCTGGTCACAGCGGCCAATCCCAACCTAGAGACCACCAAAAGCGAG
AAGGATCTGTCGGACACTGAGTATGGGGAGGCAACAGTGAGCAGCACCAA
GGTGCAGACCGTGCTGCCAACGGTCGACGACGATGCCGTCCAGCGGGCAG
TGGAGGACGTAGCCGCCGCCGTCGCCCACCAGGAGGCCGAGCCGCAGGTG
CAGCACTTCATGACCCACGACCTGGGCCACCGCGAATCGAGCTTCTCGCT
GCGCCGCGAGTTCGCGCAACATGCACACGCGGCCAAAGAGGGCCGCAACG
TCTACTTCACGCTCTCCTTCGCCGGGATCGCCCTGATGGCGGCCGTTTTC
GTTGGCGTGGCCGTGGCCAAATGGCGAACATCGCGCTCGCCGCACGCCCA
GGGCTTCATCGAGGTCGACCAGAACGTCACAACACACCATCCCATTGTGC
GCGAGGAGAAGATCGTGCCCAACATGCAGATCAATGGGTACGAGAATCCG
ACCTACAAGTATTTCGAAGTGAAAGAGGCAAGCTTTCTAGACCAT

BO05646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RA 2664 CG7727-PA 1..2661 17..2677 13305 100 Plus
Appl-RF 2667 CG7727-PF 1..2664 17..2677 13135 99.6 Plus
Appl-RE 2652 CG7727-PE 1..2649 17..2677 13090 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-RA 5422 CG7727-RA 207..2867 17..2677 13305 100 Plus
Appl-RF 5425 CG7727-RF 207..2870 17..2677 13135 99.6 Plus
Appl-RE 6324 CG7727-RE 207..2855 17..2677 13090 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 574196..574878 1559..2241 3415 100 Plus
X 23542271 X 571427..572070 624..1267 3220 100 Plus
X 23542271 X 571133..571352 404..623 1100 100 Plus
X 23542271 X 575167..575350 2389..2572 920 100 Plus
X 23542271 X 560601..560777 90..266 885 100 Plus
X 23542271 X 573851..574003 1407..1559 765 100 Plus
X 23542271 X 574940..575089 2240..2389 750 100 Plus
X 23542271 X 570860..571001 264..405 710 100 Plus
X 23542271 X 572149..572289 1268..1408 705 100 Plus
X 23542271 X 575466..575575 2568..2677 550 100 Plus
X 23542271 X 531799..531877 17..95 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:47:59 has no hits.

BO05646.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:59 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 171..2846 10..2683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:14 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 238..2898 17..2679 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:05 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 181..2841 17..2679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:02 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
Appl-RA 207..2867 17..2679 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:02 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
X 575168..575350 2390..2572 100 -> Plus
X 575471..575575 2573..2679 98   Plus
X 531799..531876 17..94 100 -> Plus
X 560606..560776 95..265 100 -> Plus
X 570862..571000 266..404 100 -> Plus
X 571134..571352 405..623 100 -> Plus
X 571427..572070 624..1267 100 -> Plus
X 572149..572289 1268..1408 100 -> Plus
X 573853..574002 1409..1558 100 -> Plus
X 574196..574878 1559..2241 100 -> Plus
X 574942..575089 2242..2389 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:14 Download gff for BO05646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 425832..425909 17..94 100 -> Plus
arm_X 454639..454809 95..265 100 -> Plus
arm_X 464895..465033 266..404 100 -> Plus
arm_X 465167..465385 405..623 100 -> Plus
arm_X 465460..466103 624..1267 100 -> Plus
arm_X 466182..466322 1268..1408 100 -> Plus
arm_X 467886..468035 1409..1558 100 -> Plus
arm_X 468229..468911 1559..2241 100 -> Plus
arm_X 468975..469122 2242..2389 100 -> Plus
arm_X 469201..469383 2390..2572 100 -> Plus
arm_X 469504..469608 2573..2679 98   Plus

BO05646.pep Sequence

Translation from 16 to 2695

> BO05646.pep
MCAALRRNLLLRSLWVVLAIGTAQVQAASPRWEPQIAVLCEAGQIYQPQY
LSEEGRWVTDLSKKTTGPTCLRDKMDLLDYCKKAYPNRDITNIVESSHYQ
KIGGWCRQGALNAAKCKGSHRWIKPFRCLGPFQSDALLVPEGCLFDHIHN
ASRCWPFVRWNQTGAAACQERGMQMRSFAMLLPCGISVFSGVEFVCCPKH
FKTDEIHVKKTDLPVMPAAQINSANDELVMNDEDDSNDSNYSKDANEDDL
DDEDDLMGDDEEDDMVADEAATAGGSPNTGSSGDSNSGSLDDINAEYDSG
EEGDNYEEDGAGSESEAEVEASWDQSGGAKVVSLKSDSSSPSSAPVAPAP
EKAPVKSESVTSTPQLSASAAAFVAANSGNSGTGAGAPPSTAQPTSDPYF
THFDPHYEHQSYKVSQKRLEESHREKVTRVMKDWSDLEEKYQDMRLADPK
AAQSFKQRMTARFQTSVQALEEEGNAEKHQLAAMHQQRVLAHINQRKREA
MTCYTQALTEQPPNAHHVEKCLQKLLRALHKDRAHALAHYRHLLNSGGPG
GLEAAASERPRTLERLIDIDRAVNQSMTMLKRYPELSAKIAQLMNDYILA
LRSKDDIPGSSLGMSEEAEAGILDKYRVEIERKVAEKERLRLAEKQRKEQ
RAAEREKLREEKLRLEAKKVDDMLKSQVAEQQSQPTQSSTQSQAQQQQQE
KSLPGKELGPDAALVTAANPNLETTKSEKDLSDTEYGEATVSSTKVQTVL
PTVDDDAVQRAVEDVAAAVAHQEAEPQVQHFMTHDLGHRESSFSLRREFA
QHAHAAKEGRNVYFTLSFAGIALMAAVFVGVAVAKWRTSRSPHAQGFIEV
DQNVTTHHPIVREEKIVPNMQINGYENPTYKYFEVKEASFLDH

BO05646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Appl-PA 887 CG7727-PA 1..887 1..887 4608 100 Plus
Appl-PF 888 CG7727-PF 1..888 1..887 4583 99.5 Plus
Appl-PB 890 CG7727-PB 1..890 1..887 4577 99.4 Plus
Appl-PE 883 CG7727-PE 1..883 1..887 4575 99.5 Plus
Appl-PD 888 CG7727-PD 1..888 1..887 4548 99 Plus