Clone BO05648 Report

Search the DGRC for BO05648

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG16936-RA
Protein status:BO05648.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO05648.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-02

> BO05648.3prime
ATGGTCTAGAAAGCTTGCCTTGCCACGGTTTTCTGCCAGCTTGGCCTTGA
AGATGCTCTTAAGCTCGTCAGCGCCGTCGCCGTTTACCTCCTGGTAGTAG
GGTAGCTCTGCCAGACGCTTCAGCCAGGCGTGCATCTTGGGAAACTTAAA
TTCATCGATGGGAGCGGTGTCGTTCACCGAGGTTACGGTGGCCACGGCGC
AAAAGTCTGCGATGGTTAGATCAGAACCACACAAATACGGCTGATCCTTG
AGGAATCCCTCTAGGATCTCCCAGCACTTCTGGATGTATGCGATCTTGTC
GATGGAGCAGTCCGTCGATCCATAATACAGGATGGGCTCGTAAAGGAAGC
GCAGGCGCGCGAAGAGGTGGCCGGAGTCCAGATGGAGCCGAGCATCCACG
TTGGCGCGCTGCACCAATTCCTTCGGATAGAGCTGCTGCTCCTTCTGGCC
ATACTTCTCCACCAGGTAGGCGCAGATGGCGTGCGAGTCAATGATAGTGG
CCTCGCCGTCGATCAGGGTCGGGATGGTGTGCTGGGGGTTCAGCTTGAGG
AATTCCGGAGTCAGATGCTCTCCCTTCAGCAGGTTAATTGGCCGTAGTTC
AAGGTCGAGTCCGATCGCCTTAGCCGTGAGGAGGACGGCGCGCGATGGGG
GACTTAGGGTGGCATAATACAGAGCTGGCTTTGACATGTCGACTGATAAC
T

BO05648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16936-PA 672 CG16936-RA 1..669 687..19 3345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1211 688..19 3350 100 Minus
GstE12-RB 1022 CG16936-RB 227..896 688..19 3350 100 Minus
GstE12-RD 907 CG16936-RD 138..807 688..19 3350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766844..24767418 19..593 2875 100 Plus
2R 25286936 2R 24767474..24767570 592..688 485 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:31:47 has no hits.

BO05648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:42 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:43 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 18..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:26:08 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 13..692 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:29 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 13..692 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:29 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24766839..24767417 13..592 99 <- Plus
2R 24767475..24767575 593..692 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:26:08 Download gff for BO05648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654362..20654940 13..592 99 <- Plus
arm_2R 20654998..20655098 593..692 98   Plus

BO05648.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-02

> BO05648.5prime
GAAGTTATCAGTCGACATGTCAAAGCCAGCTCTGTATTATGCCACCCTAA
GTCCCCCATCGCGCGCCGTCCTCCTCACGGCTAAGGCGATCGGACTCGAC
CTTGAACTACGGCCAATTAACCTGCTGAAGGGAGAGCATCTGACTCCGGA
ATTCCTCAAGCTGAACCCCCAGCACACCATCCCGACCCTGATCGACGGCG
AGGCCACTATCATTGACTCGCACGCCATCTGCGCCTACCTGGTGGAGAAG
TATGGCCAGAAGGAGCAGCAGCTCTATCCGAAGGAATTGGTGCAGCGCGC
CAACGTGGATGCTCGGCTCCATCTGGACTCCGGCCACCTCTTCGCGCGCC
TGCGCTTCCTTTACGAGCCCATCCTGTATTATGGATCGACGGACTGCTCC
ATCGACAAGATCGCATACATCCAGAAGTGCTGGGAGATCCTAGAGGGATT
CCTCAAGGATCAGCCGTATTTGTGTGGTTCTGATCTAACCATCGCAGACT
TTTGCGCCGTGGCCACCGTAACCTCGGTGAACGACACCGCTCCCATCGAT
GAATTTAAGTTTCCCAAGATGCACGCCTGGCTGAAGCGTCTGGCAGAGCT
ACCCTACTACCAGGAGGTAAACGGCGACGGCGCTGACGAGCTTAAGAGCA
TCTTCAAGGCCAAGCTGGCAGAAAACCGTGGCAAGGCAAGCTTTCTAGAC
C

BO05648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16936-PA 672 CG16936-RA 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1211 16..685 3350 100 Plus
GstE12-RB 1022 CG16936-RB 227..896 16..685 3350 100 Plus
GstE12-RD 907 CG16936-RD 138..807 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766844..24767418 685..111 2875 100 Minus
2R 25286936 2R 24767474..24767570 112..16 485 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:21:59 has no hits.

BO05648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:42 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:44 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16936-PA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:21 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 12..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:03 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 133..812 12..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:03 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24766839..24767417 112..691 99 <- Minus
2R 24767475..24767575 12..111 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:21 Download gff for BO05648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654362..20654940 112..691 99 <- Minus
arm_2R 20654998..20655098 12..111 98   Minus

BO05648.complete Sequence

703 bp (703 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630115

> BO05648.complete
GAAGTTATCAGTCGACATGTCAAAGCCAGCTCTGTATTATGCCACCCTAA
GTCCCCCATCGCGCGCCGTCCTCCTCACGGCTAAGGCGATCGGACTCGAC
CTTGAACTACGGCCAATTAACCTGCTGAAGGGAGAGCATCTGACTCCGGA
ATTCCTCAAGCTGAACCCCCAGCACACCATCCCGACCCTGATCGACGGCG
AGGCCACTATCATTGACTCGCACGCCATCTGCGCCTACCTGGTGGAGAAG
TATGGCCAGAAGGAGCAGCAGCTCTATCCGAAGGAATTGGTGCAGCGCGC
CAACGTGGATGCTCGGCTCCATCTGGACTCCGGCCACCTCTTCGCGCGCC
TGCGCTTCCTTTACGAGCCCATCCTGTATTATGGATCGACGGACTGCTCC
ATCGACAAGATCGCATACATCCAGAAGTGCTGGGAGATCCTAGAGGGATT
CCTCAAGGATCAGCCGTATTTGTGTGGTTCTGATCTAACCATCGCAGACT
TTTGCGCCGTGGCCACCGTAACCTCGGTGAACGACACCGCTCCCATCGAT
GAATTTAAGTTTCCCAAGATGCACGCCTGGCTGAAGCGTCTGGCAGAGCT
ACCCTACTACCAGGAGGTAAACGGCGACGGCGCTGACGAGCTTAAGAGCA
TCTTCAAGGCCAAGCTGGCAGAAAACCGTGGCAAGGCAAGCTTTCTAGAC
CAT

BO05648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 672 CG16936-PC 1..669 17..685 3345 100 Plus
GstE12-RB 672 CG16936-PB 1..669 17..685 3345 100 Plus
GstE12-RD 672 CG16936-PD 1..669 17..685 3345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-RC 1311 CG16936-RC 542..1211 16..685 3350 100 Plus
GstE12-RB 1022 CG16936-RB 227..896 16..685 3350 100 Plus
GstE12-RD 907 CG16936-RD 138..807 16..685 3350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24766844..24767418 685..111 2875 100 Minus
2R 25286936 2R 24767474..24767570 112..16 485 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:00:11 has no hits.

BO05648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:07 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 1..672 17..686 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:36 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 54..737 7..691 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:00 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 139..807 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:07 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
CG16936-RA 54..737 7..691 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:09 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
GstE12-RD 139..807 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:09 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24766842..24767417 112..687 99 <- Minus
2R 24767475..24767569 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:00 Download gff for BO05648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20654365..20654940 112..687 99 <- Minus
arm_2R 20654998..20655092 17..111 100   Minus

BO05648.pep Sequence

Translation from 16 to 703

> BO05648.pep
MSKPALYYATLSPPSRAVLLTAKAIGLDLELRPINLLKGEHLTPEFLKLN
PQHTIPTLIDGEATIIDSHAICAYLVEKYGQKEQQLYPKELVQRANVDAR
LHLDSGHLFARLRFLYEPILYYGSTDCSIDKIAYIQKCWEILEGFLKDQP
YLCGSDLTIADFCAVATVTSVNDTAPIDEFKFPKMHAWLKRLAELPYYQE
VNGDGADELKSIFKAKLAENRGKASFLDH

BO05648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
GstE12-PC 223 CG16936-PC 1..223 1..223 1169 100 Plus
GstE12-PB 223 CG16936-PB 1..223 1..223 1169 100 Plus
GstE12-PD 223 CG16936-PD 1..223 1..223 1169 100 Plus
GstE12-PA 223 CG16936-PA 1..223 1..223 1169 100 Plus
GstE11-PB 225 CG5224-PB 3..225 2..223 566 49.3 Plus