Clone BO05650 Report

Search the DGRC for BO05650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptLim1-RA
Protein status:BO05650.pep: full length peptide match
Sequenced Size:1549

Clone Sequence Records

BO05650.3prime Sequence

867 bp (812 high quality bases) assembled on 2005-12-02

> BO05650.3prime
ATGGTCTAGAAAGCTTGCCCAAACGAGCCCTTCATTTTGCATATTCTGCG
GTTCGCTGAAATTCGCCGAGCTCATGAACTCCGGCGAATTGGTGCGGGGG
CCATTTTGTTGCTGCTGCTGCTGCGTCTGATTCGCCGCTTGTTGCGCATT
CTGCTGTTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTGCTGCTGTTGCG
CCGCCTGTTGCTGCGCCGCTGCCGCTGCGGCGGCCATCAAGTGCTCGGCG
CTCGGCGGCGGCGGCGGTGGCGGCGGTCCGACGGCCGACTGCAGTTGCAT
TGGCGGACCGCCCGCCTGCCCAAGGAACGTCGCCTCCGGCGTCAGTCCGA
ACTCGTTCACCATCGGAATGGGTCCGCTGTGGTCCATGGGGCCACCTGGC
GCATTGAAGGGCATCGGTCCGCCGGGATGTCCGGGAAAGTAGGGTCCGTC
GTGCGGGTGAAAGGGTCCGCCGTAGCCGAACTCGAACTTGGCGTCCGCCG
CGAAGTAGGGAAAGCCGGGTCCGTCGTCCAGTCCGCCGGGCGAGAGGTTC
ATGGGGAAGCCCCTCATTTTCCGGGCGCCACCGAAAAAGGGCGGGCGGCC
CATGCTGGTGATTTGTTTCATGCGTCGCTCCTTCGACCGTTTATTCTGGA
ACCACACCTGTATGACTCGCATGGGCAGCCCGGTCTCCTTGGCCAGTTGC
TCCCTGATGTGGCGTGTCGGCTTCGGCGTCTGATTGAAGGCCGTCTTGAG
CACCTCCAGCTGTTTGGCCTTGATGGTGGTGCGCGGACCGCGTCGCTTCG
ATCCGTTGGCATCGTCGGGACTTTTGTTCTCCGCCTGGGAATCGCCACGT
CCATCCGGATCGCGGTC

BO05650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 671..1515 863..19 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RB 2708 CG11354-RB 371..1219 867..19 4230 99.9 Minus
Lim1-RA 3081 CG11354-RA 1465..2313 867..19 4230 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8758028..8758406 19..397 1895 100 Plus
X 23542271 X 8758692..8758959 393..660 1340 100 Plus
X 23542271 X 8768053..8768265 655..867 1050 99.5 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:04 has no hits.

BO05650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:45 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-PA 667..1518 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:48 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 667..1518 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:18 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1465..2316 15..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:49 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1465..2316 15..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:49 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8768056..8768265 658..867 99   Plus
X 8758025..8758404 15..395 99 <- Plus
X 8758695..8758956 396..657 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:18 Download gff for BO05650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8652058..8652437 15..395 99 <- Plus
arm_X 8652728..8652989 396..657 100 <- Plus
arm_X 8662089..8662298 658..867 99   Plus

BO05650.5prime Sequence

799 bp (777 high quality bases) assembled on 2005-12-02

> BO05650.5prime
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTG

BO05650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11354-PA 1518 Lim1-RA 1..783 17..799 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 3081 CG11354-RA 799..1581 17..799 3915 100 Plus
Lim1-RB 2708 CG11354-RB 170..487 482..799 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8787610..8787839 482..253 1150 100 Minus
X 23542271 X 8788734..8788930 255..59 985 100 Minus
X 23542271 X 8768751..8768943 674..482 965 100 Minus
X 23542271 X 8768149..8768278 799..670 650 100 Minus
X 23542271 X 8804962..8805006 61..17 225 100 Minus
Blast to na_te.dros performed 2015-02-12 23:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 240..325 502..590 122 62.9 Plus
TART-A 13424 TART-A 13424bp 11418..11503 502..590 122 62.9 Plus

BO05650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:46 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:51:50 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11354-PA 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:24 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1581 9..799 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:39 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 793..1581 9..799 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:39 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8768752..8768942 483..673 100 <- Minus
X 8787610..8787836 256..482 100 <- Minus
X 8788734..8788929 60..255 100 <- Minus
X 8804964..8805012 9..59 92   Minus
X 8768149..8768274 674..799 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:24 Download gff for BO05650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8662182..8662307 674..799 100 <- Minus
arm_X 8662785..8662975 483..673 100 <- Minus
arm_X 8681643..8681869 256..482 100 <- Minus
arm_X 8682767..8682962 60..255 100 <- Minus
arm_X 8698997..8699045 9..59 92   Minus

BO05650.complete Sequence

1549 bp (1549 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630117

> BO05650.complete
GAAGTTATCAGTCGACATGGCGTTCGGGGCGGTACTACACACCAGCCAGC
ACAATATCGGTCGCAGTGAACCGCCGGTGGGCGTGGGCGATCCCTGCGCC
GGATGCAACAAGCCCATCCTGGACAAGTTCCTGCTGAATGTCCTGGAACG
CGCCTGGCACGCCTCCTGCGTCCGCTGCTGTGAATGCCTCCAACCGCTCA
CCGACAAATGCTTCAGCCGCGAATCGAAGCTCTACTGTCGCAACGATTTC
TTCAGACGTTACGGCACCAAGTGCAGTGGGTGTGGCCAGGGTATCGCGCC
ATCGGATCTAGTGCGAAAGCCCAGGGACAAGGTCTTCCACCTAAACTGCT
TCACCTGCTGCATCTGCCGCAAGCAATTGAGCACAGGTGAGCAGCTCTAC
GTGCTGGACGACAATAAGTTCATCTGCAAGGACGACTATCTGCTGGGCAA
GGCGCCATCCTGCGGCCACAATTCGCTGAGCGATTCATTAATGGGCTCGG
CGAGCGAAGACGATGACGACGATGATCCGCCGCATTTGCGGGCCACGGCA
CTCGGATTGGGCGTACTGGGGCCCAACGGACCCGACTCAGCGGGCGGACC
TCTGGGCACATCGGATATATCAGTACAAAGCATGAGCACCGATAGCAAAA
ATACCCATGACGATTCCGATCAGGGCTCCTTGGACGGCGATCCGGATGGA
CGTGGCGATTCCCAGGCGGAGAACAAAAGTCCCGACGATGCCAACGGATC
GAAGCGACGCGGTCCGCGCACCACCATCAAGGCCAAACAGCTGGAGGTGC
TCAAGACGGCCTTCAATCAGACGCCGAAGCCGACACGCCACATCAGGGAG
CAACTGGCCAAGGAGACCGGGCTGCCCATGCGAGTCATACAGGTGTGGTT
CCAGAATAAACGGTCGAAGGAGCGACGCATGAAACAAATCACCAGCATGG
GCCGCCCGCCCTTTTTCGGTGGCGCCCGGAAAATGAGGGGCTTCCCCATG
AACCTCTCGCCCGGCGGACTGGACGACGGACCCGGCTTTCCCTACTTCGC
GGCGGACGCCAAGTTCGAGTTCGGCTACGGCGGACCCTTTCACCCGCACG
ACGGACCCTACTTTCCCGGACATCCCGGCGGACCGATGCCCTTCAATGCG
CCAGGTGGCCCCATGGACCACAGCGGACCCATTCCGATGGTGAACGAGTT
CGGACTGACGCCGGAGGCGACGTTCCTTGGGCAGGCGGGCGGTCCGCCAA
TGCAACTGCAGTCGGCCGTCGGACCGCCGCCACCGCCGCCGCCGCCGAGC
GCCGAGCACTTGATGGCCGCCGCAGCGGCAGCGGCGCAGCAACAGGCGGC
GCAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACAGCAGA
ATGCGCAACAAGCGGCGAATCAGACGCAGCAGCAGCAGCAACAAAATGGC
CCCCGCACCAATTCGCCGGAGTTCATGAGCTCGGCGAATTTCAGCGAACC
GCAGAATATGCAAAATGAAGGGCTCGTTTGGGCAAGCTTTCTAGACCAT

BO05650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 1518 CG11354-PA 1..1515 17..1531 7575 100 Plus
Lim1-RB 1044 CG11354-PB 1..1041 491..1531 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-RA 3081 CG11354-RA 799..2313 17..1531 7575 100 Plus
Lim1-RB 2708 CG11354-RB 170..1219 482..1531 5250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8758028..8758406 1531..1153 1895 100 Minus
X 23542271 X 8758692..8758959 1157..890 1340 100 Minus
X 23542271 X 8787610..8787839 482..253 1150 100 Minus
X 23542271 X 8768053..8768278 895..670 1130 100 Minus
X 23542271 X 8788734..8788930 255..59 985 100 Minus
X 23542271 X 8768751..8768943 674..482 965 100 Minus
X 23542271 X 8804962..8805006 61..17 225 100 Minus
Blast to na_te.dros performed 2014-11-28 08:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 240..325 502..590 122 62.9 Plus
TART-A 13424 TART-A 13424bp 11418..11503 502..590 122 62.9 Plus

BO05650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:30:08 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:30 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 770..2284 17..1533 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:09 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 799..2313 17..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:30:08 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 764..2287 9..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:57 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
Lim1-RA 799..2313 17..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:57 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
X 8768056..8768274 674..892 100 <- Minus
X 8768752..8768942 483..673 100 <- Minus
X 8758695..8758956 893..1154 100 <- Minus
X 8758026..8758404 1155..1533 99 <- Minus
X 8787610..8787836 256..482 100 <- Minus
X 8788734..8788929 60..255 100 <- Minus
X 8804964..8805006 17..59 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:09 Download gff for BO05650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8698997..8699039 17..59 100   Minus
arm_X 8681643..8681869 256..482 100 <- Minus
arm_X 8652059..8652437 1155..1533 99 <- Minus
arm_X 8652728..8652989 893..1154 100 <- Minus
arm_X 8662089..8662307 674..892 100 <- Minus
arm_X 8662785..8662975 483..673 100 <- Minus
arm_X 8682767..8682962 60..255 100 <- Minus

BO05650.pep Sequence

Translation from 16 to 1549

> BO05650.pep
MAFGAVLHTSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLERAWHAS
CVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVR
KPRDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCG
HNSLSDSLMGSASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSD
ISVQSMSTDSKNTHDDSDQGSLDGDPDGRGDSQAENKSPDDANGSKRRGP
RTTIKAKQLEVLKTAFNQTPKPTRHIREQLAKETGLPMRVIQVWFQNKRS
KERRMKQITSMGRPPFFGGARKMRGFPMNLSPGGLDDGPGFPYFAADAKF
EFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMVNEFGLTPE
ATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQ
QQQQQQQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSEPQNMQN
EGLVWASFLDH

BO05650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Lim1-PA 505 CG11354-PA 1..505 1..505 2759 100 Plus
Lim1-PB 347 CG11354-PB 1..347 159..505 1871 100 Plus
Lim3-PE 405 CG10699-PE 7..126 27..146 405 53.3 Plus
Lim3-PA 440 CG10699-PA 42..161 27..146 405 53.3 Plus
tup-PB 465 CG10619-PB 54..337 27..339 404 30.2 Plus
Lim3-PE 405 CG10699-PE 6..221 85..332 260 30.9 Plus
Lim3-PA 440 CG10699-PA 41..256 85..332 260 30.9 Plus