Clone Sequence Records
BO05658.3prime Sequence
890 bp (772 high quality bases) assembled on 2005-12-02
> BO05658.3prime
ATGGTCTAGAAAGCTTGCAATGCGAGCGCGTTGCAAGGCCATGGCTGGAT
AAATGAGCAGAAGTCCGCCGGCTATATAGGTGATCCTGGAGCCAACGCAC
CAGAAGGCAATGCATCCCACCACGGGGCCCAGAGCTCGAGCCAAAGCTCC
CAGTGAGCGGAATATGCCCAGTACTGAACCCTTCTGGTCATCGTTTCCGT
ATTTGGATACGAGGGTGGTCAGACAGGTGACAGCGAAGGCTGTGGAGATT
GCGAACAGGGTCATGCCGGCGTACAGCATCCGACTGCCCTCGGCTAGGCC
GACTACTACGAAGGCGGGTACAATCAGGTACAAACTGAAGATGGCATAGC
CTTTGATCTTCGCCTCGGGCAGCCGTCGGACCACCGATCCCTGCAGCAAA
GTCATGATTACACCCGTTGTCAAAAACATCTTCGCCTGATCCATCGAAGT
GTAACCGAATTTGTGGTACATCAGAAATGTGACGGTGAACTCCAAGCCGG
AATACAGAAAGAGATACAAGAAGTATACCAGGCCAATGGATCGCAGTGCC
GCAATGTCTTTCTTAGGCACATTTTTGATGGCAGCAAATCTAAATATGGC
CGAAAAATTGAGCAACTGCAGGCCATAAGACAGTGCAGATGATATCTCCT
TAACACGTTTCTCCTTGGGCAACGTTTCCCGCAGACAGCAGGCCAGGACC
ACAAGATCTCCAACTGCCAGGCCAAACGCCAGCAGAGAGGGCAACACAAA
CCAAGTACTTCCACTTTTATCGGAGAATATGGCGAACAGGGCTCCAATCA
TGGGCCCCACAATAAAGCCCAGCGAGAAGGCCACACCCACAAAGGCCATA
CCGCGTCCACGGGTCTTAACGCTGGGCACATCCGTAATGA
BO05658.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5760-PA | 1434 | rtet-RA | 560..1431 | 890..19 | 4310 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 721..1592 | 890..19 | 4330 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21110251..21110557 | 414..108 | 1535 | 100 | Minus |
3R | 32079331 | 3R | 21109362..21109589 | 890..663 | 1110 | 99.1 | Minus |
3R | 32079331 | 3R | 21110017..21110196 | 591..412 | 900 | 100 | Minus |
3R | 32079331 | 3R | 21110615..21110704 | 108..19 | 450 | 100 | Minus |
3R | 32079331 | 3R | 21109650..21109725 | 665..590 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:54:06 has no hits.
BO05658.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:56 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-PA | 561..1434 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:05 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5760-PA | 561..1434 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:45 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 722..1596 | 14..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:47 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 722..1596 | 14..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:47 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21109363..21109588 | 664..889 | 99 | -> | Minus |
3R | 21109652..21109725 | 590..663 | 100 | -> | Minus |
3R | 21110019..21110194 | 414..589 | 100 | -> | Minus |
3R | 21110252..21110557 | 108..413 | 100 | -> | Minus |
3R | 21110616..21110708 | 14..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:45 Download gff for
BO05658.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16935085..16935310 | 664..889 | 99 | -> | Minus |
arm_3R | 16935374..16935447 | 590..663 | 100 | -> | Minus |
arm_3R | 16935741..16935916 | 414..589 | 100 | -> | Minus |
arm_3R | 16935974..16936279 | 108..413 | 100 | -> | Minus |
arm_3R | 16936338..16936430 | 14..107 | 97 | | Minus |
BO05658.5prime Sequence
898 bp (817 high quality bases) assembled on 2005-11-29
> BO05658.5prime
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTG
BO05658.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5760-PA | 1434 | rtet-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 162..1043 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21108607..21109050 | 17..460 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 21109246..21109589 | 460..803 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21109650..21109725 | 801..876 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:54:26 has no hits.
BO05658.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:57 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:06 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5760-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:25 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 152..1043 | 7..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:21 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 152..1043 | 7..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:21 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21108597..21109050 | 7..460 | 99 | -> | Plus |
3R | 21109247..21109588 | 461..802 | 100 | -> | Plus |
3R | 21109652..21109725 | 803..876 | 100 | -> | Plus |
3R | 21110019..21110040 | 877..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:25 Download gff for
BO05658.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16934319..16934772 | 7..460 | 99 | -> | Plus |
arm_3R | 16934969..16935310 | 461..802 | 100 | -> | Plus |
arm_3R | 16935374..16935447 | 803..876 | 100 | -> | Plus |
arm_3R | 16935741..16935762 | 877..898 | 100 | | Plus |
BO05658.complete Sequence
1465 bp (1465 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630122
> BO05658.complete
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGATCCATTGGCCTGGTATACTTCTTGT
ATCTCTTTCTGTATTCCGGCTTGGAGTTCACCGTCACATTTCTGATGTAC
CACAAATTCGGTTACACTTCGATGGATCAGGCGAAGATGTTTTTGACAAC
GGGTGTAATCATGACTTTGCTGCAGGGATCGGTGGTCCGACGGCTGCCCG
AGGCGAAGATCAAAGGCTATGCCATCTTCAGTTTGTACCTGATTGTACCC
GCCTTCGTAGTAGTCGGCCTAGCCGAGGGCAGTCGGATGCTGTACGCCGG
CATGACCCTGTTCGCAATCTCCACAGCCTTCGCTGTCACCTGTCTGACCA
CCCTCGTATCCAAATACGGAAACGATGACCAGAAGGGTTCAGTACTGGGC
ATATTCCGCTCACTGGGAGCTTTGGCTCGAGCTCTGGGCCCCGTGGTGGG
ATGCATTGCCTTCTGGTGCGTTGGCTCCAGGATCACCTATATAGCCGGCG
GACTTCTGCTCATTTATCCAGCCATGGCCTTGCAACGCGCTCGCATTGCA
AGCTTTCTAGACCAT
BO05658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1434 | CG5760-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-RA | 1722 | CG5760-RA | 162..1592 | 17..1447 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21108607..21109050 | 17..460 | 2220 | 100 | Plus |
3R | 32079331 | 3R | 21109246..21109589 | 460..803 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21110251..21110557 | 1052..1358 | 1535 | 100 | Plus |
3R | 32079331 | 3R | 21110017..21110196 | 875..1054 | 900 | 100 | Plus |
3R | 32079331 | 3R | 21110615..21110704 | 1358..1447 | 450 | 100 | Plus |
3R | 32079331 | 3R | 21109650..21109725 | 801..876 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:44:29 has no hits.
BO05658.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:55 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 1..1434 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:25 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 150..1594 | 7..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:47 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 162..1592 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:55 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 150..1594 | 7..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:15 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtet-RA | 162..1592 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:15 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21110019..21110194 | 877..1052 | 100 | -> | Plus |
3R | 21110252..21110557 | 1053..1358 | 100 | -> | Plus |
3R | 21110616..21110704 | 1359..1449 | 97 | | Plus |
3R | 21108607..21109050 | 17..460 | 100 | -> | Plus |
3R | 21109247..21109588 | 461..802 | 100 | -> | Plus |
3R | 21109652..21109725 | 803..876 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:47 Download gff for
BO05658.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16934329..16934772 | 17..460 | 100 | -> | Plus |
arm_3R | 16934969..16935310 | 461..802 | 100 | -> | Plus |
arm_3R | 16935374..16935447 | 803..876 | 100 | -> | Plus |
arm_3R | 16935741..16935916 | 877..1052 | 100 | -> | Plus |
arm_3R | 16935974..16936279 | 1053..1358 | 100 | -> | Plus |
arm_3R | 16936338..16936426 | 1359..1449 | 97 | | Plus |
BO05658.pep Sequence
Translation from 16 to 1465
> BO05658.pep
MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI
YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL
LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG
IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG
MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV
VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA
ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT
LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA
ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW
CVGSRITYIAGGLLLIYPAMALQRARIASFLDH
BO05658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtet-PA | 477 | CG5760-PA | 1..477 | 1..477 | 2409 | 100 | Plus |
CG5078-PA | 447 | CG5078-PA | 59..376 | 111..450 | 182 | 23.3 | Plus |