Clone BO05658 Report

Search the DGRC for BO05658

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptrtet-RA
Protein status:BO05658.pep: validated full length
Sequenced Size:1465

Clone Sequence Records

BO05658.3prime Sequence

890 bp (772 high quality bases) assembled on 2005-12-02

> BO05658.3prime
ATGGTCTAGAAAGCTTGCAATGCGAGCGCGTTGCAAGGCCATGGCTGGAT
AAATGAGCAGAAGTCCGCCGGCTATATAGGTGATCCTGGAGCCAACGCAC
CAGAAGGCAATGCATCCCACCACGGGGCCCAGAGCTCGAGCCAAAGCTCC
CAGTGAGCGGAATATGCCCAGTACTGAACCCTTCTGGTCATCGTTTCCGT
ATTTGGATACGAGGGTGGTCAGACAGGTGACAGCGAAGGCTGTGGAGATT
GCGAACAGGGTCATGCCGGCGTACAGCATCCGACTGCCCTCGGCTAGGCC
GACTACTACGAAGGCGGGTACAATCAGGTACAAACTGAAGATGGCATAGC
CTTTGATCTTCGCCTCGGGCAGCCGTCGGACCACCGATCCCTGCAGCAAA
GTCATGATTACACCCGTTGTCAAAAACATCTTCGCCTGATCCATCGAAGT
GTAACCGAATTTGTGGTACATCAGAAATGTGACGGTGAACTCCAAGCCGG
AATACAGAAAGAGATACAAGAAGTATACCAGGCCAATGGATCGCAGTGCC
GCAATGTCTTTCTTAGGCACATTTTTGATGGCAGCAAATCTAAATATGGC
CGAAAAATTGAGCAACTGCAGGCCATAAGACAGTGCAGATGATATCTCCT
TAACACGTTTCTCCTTGGGCAACGTTTCCCGCAGACAGCAGGCCAGGACC
ACAAGATCTCCAACTGCCAGGCCAAACGCCAGCAGAGAGGGCAACACAAA
CCAAGTACTTCCACTTTTATCGGAGAATATGGCGAACAGGGCTCCAATCA
TGGGCCCCACAATAAAGCCCAGCGAGAAGGCCACACCCACAAAGGCCATA
CCGCGTCCACGGGTCTTAACGCTGGGCACATCCGTAATGA

BO05658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5760-PA 1434 rtet-RA 560..1431 890..19 4310 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 721..1592 890..19 4330 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21110251..21110557 414..108 1535 100 Minus
3R 32079331 3R 21109362..21109589 890..663 1110 99.1 Minus
3R 32079331 3R 21110017..21110196 591..412 900 100 Minus
3R 32079331 3R 21110615..21110704 108..19 450 100 Minus
3R 32079331 3R 21109650..21109725 665..590 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:54:06 has no hits.

BO05658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:56 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-PA 561..1434 15..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:05 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5760-PA 561..1434 15..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:45 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 722..1596 14..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:47 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 722..1596 14..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:47 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21109363..21109588 664..889 99 -> Minus
3R 21109652..21109725 590..663 100 -> Minus
3R 21110019..21110194 414..589 100 -> Minus
3R 21110252..21110557 108..413 100 -> Minus
3R 21110616..21110708 14..107 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:45 Download gff for BO05658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16935085..16935310 664..889 99 -> Minus
arm_3R 16935374..16935447 590..663 100 -> Minus
arm_3R 16935741..16935916 414..589 100 -> Minus
arm_3R 16935974..16936279 108..413 100 -> Minus
arm_3R 16936338..16936430 14..107 97   Minus

BO05658.5prime Sequence

898 bp (817 high quality bases) assembled on 2005-11-29

> BO05658.5prime
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTG

BO05658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5760-PA 1434 rtet-RA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 162..1043 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21108607..21109050 17..460 2220 100 Plus
3R 32079331 3R 21109246..21109589 460..803 1720 100 Plus
3R 32079331 3R 21109650..21109725 801..876 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:54:26 has no hits.

BO05658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:27:57 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:06 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5760-PA 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:25 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 152..1043 7..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:21 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 152..1043 7..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:21 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21108597..21109050 7..460 99 -> Plus
3R 21109247..21109588 461..802 100 -> Plus
3R 21109652..21109725 803..876 100 -> Plus
3R 21110019..21110040 877..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:25 Download gff for BO05658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16934319..16934772 7..460 99 -> Plus
arm_3R 16934969..16935310 461..802 100 -> Plus
arm_3R 16935374..16935447 803..876 100 -> Plus
arm_3R 16935741..16935762 877..898 100   Plus

BO05658.complete Sequence

1465 bp (1465 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630122

> BO05658.complete
GAAGTTATCAGTCGACATGGCCGACCTACGGAGTCGCCACAATGGAACCG
CTGCCATGGAGAAGCAAAGCCACAGCCAAACCGGAAGCCACCATCACAAC
AACAATAAAGCGCTGGATAAGGAAGCATCGGAGAATGGAAAGCCGGAGAA
GAGTGATCCCATGATATACATAATCTTCGTATCGCTGCTCTTCGACTTAC
TGGCCTTCACCATCATTCTGCCGCTGCTGCCCTCGCTGTTGGAGCACTAT
CGCCAGAACGACAGCTCCGGCTTGTATGCCGTGCTCACGGATCGGGTGCG
CTGGTTCCAGCAGCTCCTGGGCGCCCCGGATCGCTACATATCGGTGCTAT
TCGGAGGCTTTCTCGGCTCCATGTTCAGCTTCCTGCAGTTCGTGGCCAGT
CCGATTGTCGGAGGACTCTCGGACTACTACGGACGGAAACCAGTCCTGCT
GGCTTGTGCGAGTGGTATTGCGTTATCCTATCTGATCTGGGCCTGCTCCA
GCAACTTTGCCCTGTTCGTTTTGGCCCGCTTCGTGGGCGGAATTAGCAAG
GGCAACATATCCCTGTGCATGTCCGTCATTACGGATGTGTCCAGCGTTAA
GACCCGTGGACGCGGTATGGCCCTTGTGGGTGTGGCCTTCTCGCTGGGCT
TTATTGTGGGGCCCATGATTGGAGCCCTGTTCGCCATATTCTCCGATAAA
AGTGGAAGTACTTGGTTTGTGTTGCCCTCTCTGCTGGCGTTTGGCCTGGC
AGTTGGAGATCTTGTGGTCCTGGCCTGCTGTCTGCGGGAAACGTTGCCCA
AGGAGAAACGTGTTAAGGAGATATCATCTGCACTGTCTTATGGCCTGCAG
TTGCTCAATTTTTCGGCCATATTTAGATTTGCTGCCATCAAAAATGTGCC
TAAGAAAGACATTGCGGCACTGCGATCCATTGGCCTGGTATACTTCTTGT
ATCTCTTTCTGTATTCCGGCTTGGAGTTCACCGTCACATTTCTGATGTAC
CACAAATTCGGTTACACTTCGATGGATCAGGCGAAGATGTTTTTGACAAC
GGGTGTAATCATGACTTTGCTGCAGGGATCGGTGGTCCGACGGCTGCCCG
AGGCGAAGATCAAAGGCTATGCCATCTTCAGTTTGTACCTGATTGTACCC
GCCTTCGTAGTAGTCGGCCTAGCCGAGGGCAGTCGGATGCTGTACGCCGG
CATGACCCTGTTCGCAATCTCCACAGCCTTCGCTGTCACCTGTCTGACCA
CCCTCGTATCCAAATACGGAAACGATGACCAGAAGGGTTCAGTACTGGGC
ATATTCCGCTCACTGGGAGCTTTGGCTCGAGCTCTGGGCCCCGTGGTGGG
ATGCATTGCCTTCTGGTGCGTTGGCTCCAGGATCACCTATATAGCCGGCG
GACTTCTGCTCATTTATCCAGCCATGGCCTTGCAACGCGCTCGCATTGCA
AGCTTTCTAGACCAT

BO05658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1434 CG5760-PA 1..1431 17..1447 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:31
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-RA 1722 CG5760-RA 162..1592 17..1447 7155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21108607..21109050 17..460 2220 100 Plus
3R 32079331 3R 21109246..21109589 460..803 1720 100 Plus
3R 32079331 3R 21110251..21110557 1052..1358 1535 100 Plus
3R 32079331 3R 21110017..21110196 875..1054 900 100 Plus
3R 32079331 3R 21110615..21110704 1358..1447 450 100 Plus
3R 32079331 3R 21109650..21109725 801..876 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:44:29 has no hits.

BO05658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:55 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 1..1434 17..1451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:25 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 150..1594 7..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:47 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 162..1592 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:55 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 150..1594 7..1452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:15 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
rtet-RA 162..1592 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:15 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21110019..21110194 877..1052 100 -> Plus
3R 21110252..21110557 1053..1358 100 -> Plus
3R 21110616..21110704 1359..1449 97   Plus
3R 21108607..21109050 17..460 100 -> Plus
3R 21109247..21109588 461..802 100 -> Plus
3R 21109652..21109725 803..876 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:47 Download gff for BO05658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16934329..16934772 17..460 100 -> Plus
arm_3R 16934969..16935310 461..802 100 -> Plus
arm_3R 16935374..16935447 803..876 100 -> Plus
arm_3R 16935741..16935916 877..1052 100 -> Plus
arm_3R 16935974..16936279 1053..1358 100 -> Plus
arm_3R 16936338..16936426 1359..1449 97   Plus

BO05658.pep Sequence

Translation from 16 to 1465

> BO05658.pep
MADLRSRHNGTAAMEKQSHSQTGSHHHNNNKALDKEASENGKPEKSDPMI
YIIFVSLLFDLLAFTIILPLLPSLLEHYRQNDSSGLYAVLTDRVRWFQQL
LGAPDRYISVLFGGFLGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASG
IALSYLIWACSSNFALFVLARFVGGISKGNISLCMSVITDVSSVKTRGRG
MALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFVLPSLLAFGLAVGDLV
VLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVPKKDIA
ALRSIGLVYFLYLFLYSGLEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMT
LLQGSVVRRLPEAKIKGYAIFSLYLIVPAFVVVGLAEGSRMLYAGMTLFA
ISTAFAVTCLTTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFW
CVGSRITYIAGGLLLIYPAMALQRARIASFLDH

BO05658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
rtet-PA 477 CG5760-PA 1..477 1..477 2409 100 Plus
CG5078-PA 447 CG5078-PA 59..376 111..450 182 23.3 Plus