Clone BO05662 Report

Search the DGRC for BO05662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptwdb-RA
Protein status:BO05662.pep: validated full length
Sequenced Size:1606

Clone Sequence Records

BO05662.3prime Sequence

836 bp (819 high quality bases) assembled on 2005-12-02

> BO05662.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCGCCTTATCCTGTTTGATTTTCGCAT
TTGTGGTCGCAGGATTATTGTCGCCGCCGGCACCGCCGCTGGACAGGCTA
CCGCTGCTGCCGCTATTCGACTGCTGCTGATGAGAGTTCAGGCCAGCGGA
GCTGGGTGGCTGCAGGGACGTTGACGCCGCGGAAGCTGCGCTGTTCGATG
TCGTGGCGCTGCCGCCGGCGGTGCGCCCACTAGAACGATTGGATTCGAGT
TCGTGCAGTTTCTTCCACAGTTCCTCGCGGTCACGCTCACGTTTTTTTTC
CTTTTGCCGCTCCGCCTTGTAGCTGGAGGTAAGCTCGTCGAACAGTTTCG
AATTCATCTCCATGAACGTCTTCAAAACGTTGTATACGAGCGCCACGATA
GTTTGATTCCAGTGTTCCTTGCTGATGCGGTATAGGGCCGGGAACATGAT
CGGCATGATGACCGCATTGTTCTCCTCGATTAGCGACATGGCGTACTCAT
TGTTCCACAGATAAAGAGCTCGCTCAGCAACCTGAAAATGTGGACTCGAC
ACGCATTTTGCAATCTGACGGAATAGCGGCTCCTGAATCTTGACAAACTG
CGGCGGATCGATCACATCGAGGATCTCCTCAATCTCGCCCAGGAACATGA
CCTCCTTCTGGGAACACGTCTTGGGCCAGAACTTCAGCAGGCCACGCACC
ACCGGTTCGGTAAGGAATGGATCCTTCTCTAGGAATTGTACAATGCAATA
CGCCAGTTGAGCGTGGTAGAGCGACAGGCATTTGACTTTGTGCAGTGGCA
ATAGGACCTTAACCAGAAACTGTTTGTGTTCGGCCT

BO05662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5643-PB 1575 wdb-RB 755..1572 836..19 4090 100 Minus
CG5643-PD 1575 wdb-RD 755..1572 836..19 4090 100 Minus
CG5643-PF 1575 wdb-RF 755..1572 836..19 4090 100 Minus
CG5643-PG 1575 wdb-RG 755..1572 836..19 4090 100 Minus
CG5643-PA 1575 wdb-RA 755..1572 836..19 4090 100 Minus
CG5643-PC 1575 wdb-RC 755..1572 836..19 4090 100 Minus
CG5643-PE 1575 wdb-RE 755..1572 836..19 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 2372..3189 836..19 4090 100 Minus
wdb-RE 3635 CG5643-RE 2288..3105 836..19 4090 100 Minus
wdb-RC 6833 CG5643-RC 2119..2936 836..19 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27566205..27566511 530..836 1535 100 Plus
3R 32079331 3R 27565572..27565854 19..301 1415 100 Plus
3R 32079331 3R 27565917..27566152 301..536 1180 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:55:37 has no hits.

BO05662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:02 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-PC 755..1575 15..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:13 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5643-PE 755..1575 15..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:28 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 2119..2941 13..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:54 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 2119..2941 13..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:54 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27565567..27565854 13..301 99 <- Plus
3R 27565918..27566147 302..531 100 <- Plus
3R 27566207..27566511 532..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:28 Download gff for BO05662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23391289..23391576 13..301 99 <- Plus
arm_3R 23391640..23391869 302..531 100 <- Plus
arm_3R 23391929..23392233 532..836 100   Plus

BO05662.5prime Sequence

925 bp (875 high quality bases) assembled on 2005-11-29

> BO05662.5prime
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGGAGGATCCATTCCTTAACGA
ACCCGGTGGTGCGTGGCCTGCTGAA

BO05662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5643-PB 1575 wdb-RB 1..887 17..903 4385 99.7 Plus
CG5643-PD 1575 wdb-RD 1..887 17..903 4385 99.7 Plus
CG5643-PF 1575 wdb-RF 1..887 17..903 4385 99.7 Plus
CG5643-PG 1575 wdb-RG 1..887 17..903 4385 99.7 Plus
CG5643-PA 1575 wdb-RA 1..887 17..903 4385 99.7 Plus
CG5643-PC 1575 wdb-RC 1..887 17..903 4385 99.7 Plus
CG5643-PE 1575 wdb-RE 1..887 17..903 4385 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 1618..2525 17..925 4490 99.7 Plus
wdb-RE 3635 CG5643-RE 1534..2441 17..925 4490 99.7 Plus
wdb-RC 6833 CG5643-RC 1365..2272 17..925 4490 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27567152..27567353 355..154 1010 100 Minus
3R 32079331 3R 27566861..27567056 550..355 980 100 Minus
3R 32079331 3R 27566605..27566797 741..549 965 100 Minus
3R 32079331 3R 27566358..27566543 925..739 855 98.4 Minus
3R 32079331 3R 27567412..27567554 159..17 700 99.3 Minus
3R 32079331 3R 18175660..18175925 404..669 325 74.8 Plus
3R 32079331 3R 18176003..18176210 681..888 200 73.1 Plus
Blast to na_te.dros performed on 2015-02-13 05:54:14 has no hits.

BO05662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:03 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-PC 1..906 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:15 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5643-PE 1..906 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:19 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2272 17..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:06 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2272 17..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:06 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27566358..27566540 742..925 98 <- Minus
3R 27566605..27566795 551..741 100 <- Minus
3R 27566861..27567055 356..550 100 <- Minus
3R 27567152..27567351 156..355 100 <- Minus
3R 27567416..27567554 17..155 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:19 Download gff for BO05662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23392080..23392262 742..925 98 <- Minus
arm_3R 23392327..23392517 551..741 100 <- Minus
arm_3R 23392583..23392777 356..550 100 <- Minus
arm_3R 23392874..23393073 156..355 100 <- Minus
arm_3R 23393138..23393276 17..155 100   Minus

BO05662.complete Sequence

1606 bp (1606 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630124

> BO05662.complete
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTACCGA
ACCGGTGGTGCGTGGCCTGCTGAAGTTCTGGCCCAAGACGTGTTCCCAGA
AGGAGGTCATGTTCCTGGGCGAGATTGAGGAGATCCTCGATGTGATCGAT
CCGCCGCAGTTTGTCAAGATTCAGGAGCCGCTATTCCGTCAGATTGCAAA
ATGCGTGTCGAGTCCACATTTTCAGGTTGCTGAGCGAGCTCTTTATCTGT
GGAACAATGAGTACGCCATGTCGCTAATCGAGGAGAACAATGCGGTCATC
ATGCCGATCATGTTCCCGGCCCTATACCGCATCAGCAAGGAACACTGGAA
TCAAACTATCGTGGCGCTCGTATACAACGTTTTGAAGACGTTCATGGAGA
TGAATTCGAAACTGTTCGACGAGCTTACCTCCAGCTACAAGGCGGAGCGG
CAAAAGGAAAAAAAACGTGAGCGTGACCGCGAGGAACTGTGGAAGAAACT
GCACGAACTCGAATCCAATCGTTCTAGTGGGCGCACCGCCGGCGGCAGCG
CCACGACATCGAACAGCGCAGCTTCCGCGGCGTCAACGTCCCTGCAGCCA
CCCAGCTCCGCTGGCCTGAACTCTCATCAGCAGCAGTCGAATAGCGGCAG
CAGCGGTAGCCTGTCCAGCGGCGGTGCCGGCGGCGACAATAATCCTGCGA
CCACAAATGCGAAAATCAAACAGGATAAGGCGGACAACGCAAGCTTTCTA
GACCAT

BO05662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 1575 CG5643-PF 1..1572 17..1588 7860 100 Plus
wdb-RE 1575 CG5643-PE 1..1572 17..1588 7860 100 Plus
wdb-RC 1575 CG5643-PC 1..1572 17..1588 7860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-RF 7086 CG5643-RF 1618..3189 17..1588 7860 100 Plus
wdb-RE 3635 CG5643-RE 1534..3105 17..1588 7860 100 Plus
wdb-RC 6833 CG5643-RC 1365..2936 17..1588 7860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27566205..27566543 1077..739 1695 100 Minus
3R 32079331 3R 27565572..27565854 1588..1306 1415 100 Minus
3R 32079331 3R 27565917..27566152 1306..1071 1180 100 Minus
3R 32079331 3R 27567152..27567353 355..154 1010 100 Minus
3R 32079331 3R 27566861..27567056 550..355 980 100 Minus
3R 32079331 3R 27566605..27566797 741..549 965 100 Minus
3R 32079331 3R 27567412..27567554 159..17 700 99.3 Minus
3R 32079331 3R 18175660..18175925 404..669 325 74.8 Plus
3R 32079331 3R 18176003..18176210 681..888 215 73.6 Plus
Blast to na_te.dros performed on 2014-11-27 13:54:13 has no hits.

BO05662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:56 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1..1575 17..1592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:27 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1203..2779 17..1594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:10 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2936 17..1590 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:57 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RF 1203..2779 17..1594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:41 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
wdb-RC 1365..2936 17..1590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:41 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27566861..27567055 356..550 100 <- Minus
3R 27567152..27567351 156..355 100 <- Minus
3R 27567416..27567554 17..155 100   Minus
3R 27566605..27566795 551..741 100 <- Minus
3R 27565570..27565854 1306..1590 99 <- Minus
3R 27565918..27566147 1076..1305 100 <- Minus
3R 27566207..27566540 742..1075 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:10 Download gff for BO05662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23392874..23393073 156..355 100 <- Minus
arm_3R 23391292..23391576 1306..1590 99 <- Minus
arm_3R 23391640..23391869 1076..1305 100 <- Minus
arm_3R 23391929..23392262 742..1075 100 <- Minus
arm_3R 23392327..23392517 551..741 100 <- Minus
arm_3R 23392583..23392777 356..550 100 <- Minus
arm_3R 23393138..23393276 17..155 100   Minus

BO05662.pep Sequence

Translation from 16 to 1606

> BO05662.pep
MSSGTFVDRIDPFAKRSLKKKGKKSQGSSRYRNSQDVELQQLPPLKADCS
SLEQEELFIRKLRQCCVSFDFMDPVTDLKGKEIKRAALNDLSTYITHGRG
VLTEPVYPEIIRMISCNLFRTLPPSENPDFDPEEDDPTLEASWPHLQLVY
EVFLRFLESQDFQATIGKRVIDQKFVLQLLELFDSEDPRERDFLKTVLHR
IYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVGELLEILGSIINGFALP
LKAEHKQFLVKVLLPLHKVKCLSLYHAQLAYCIVQFLEKDPFLTEPVVRG
LLKFWPKTCSQKEVMFLGEIEEILDVIDPPQFVKIQEPLFRQIAKCVSSP
HFQVAERALYLWNNEYAMSLIEENNAVIMPIMFPALYRISKEHWNQTIVA
LVYNVLKTFMEMNSKLFDELTSSYKAERQKEKKRERDREELWKKLHELES
NRSSGRTAGGSATTSNSAASAASTSLQPPSSAGLNSHQQQSNSGSSGSLS
SGGAGGDNNPATTNAKIKQDKADNASFLDH

BO05662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
wdb-PF 524 CG5643-PF 1..524 1..524 2707 100 Plus
wdb-PE 524 CG5643-PE 1..524 1..524 2707 100 Plus
wdb-PC 524 CG5643-PC 1..524 1..524 2707 100 Plus
wdb-PA 524 CG5643-PA 1..524 1..524 2707 100 Plus
wdb-PD 524 CG5643-PD 1..524 1..524 2707 100 Plus