Clone Sequence Records
BO05662.3prime Sequence
836 bp (819 high quality bases) assembled on 2005-12-02
> BO05662.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCGCCTTATCCTGTTTGATTTTCGCAT
TTGTGGTCGCAGGATTATTGTCGCCGCCGGCACCGCCGCTGGACAGGCTA
CCGCTGCTGCCGCTATTCGACTGCTGCTGATGAGAGTTCAGGCCAGCGGA
GCTGGGTGGCTGCAGGGACGTTGACGCCGCGGAAGCTGCGCTGTTCGATG
TCGTGGCGCTGCCGCCGGCGGTGCGCCCACTAGAACGATTGGATTCGAGT
TCGTGCAGTTTCTTCCACAGTTCCTCGCGGTCACGCTCACGTTTTTTTTC
CTTTTGCCGCTCCGCCTTGTAGCTGGAGGTAAGCTCGTCGAACAGTTTCG
AATTCATCTCCATGAACGTCTTCAAAACGTTGTATACGAGCGCCACGATA
GTTTGATTCCAGTGTTCCTTGCTGATGCGGTATAGGGCCGGGAACATGAT
CGGCATGATGACCGCATTGTTCTCCTCGATTAGCGACATGGCGTACTCAT
TGTTCCACAGATAAAGAGCTCGCTCAGCAACCTGAAAATGTGGACTCGAC
ACGCATTTTGCAATCTGACGGAATAGCGGCTCCTGAATCTTGACAAACTG
CGGCGGATCGATCACATCGAGGATCTCCTCAATCTCGCCCAGGAACATGA
CCTCCTTCTGGGAACACGTCTTGGGCCAGAACTTCAGCAGGCCACGCACC
ACCGGTTCGGTAAGGAATGGATCCTTCTCTAGGAATTGTACAATGCAATA
CGCCAGTTGAGCGTGGTAGAGCGACAGGCATTTGACTTTGTGCAGTGGCA
ATAGGACCTTAACCAGAAACTGTTTGTGTTCGGCCT
BO05662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5643-PB | 1575 | wdb-RB | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PD | 1575 | wdb-RD | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PF | 1575 | wdb-RF | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PG | 1575 | wdb-RG | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PA | 1575 | wdb-RA | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PC | 1575 | wdb-RC | 755..1572 | 836..19 | 4090 | 100 | Minus |
CG5643-PE | 1575 | wdb-RE | 755..1572 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 2372..3189 | 836..19 | 4090 | 100 | Minus |
wdb-RE | 3635 | CG5643-RE | 2288..3105 | 836..19 | 4090 | 100 | Minus |
wdb-RC | 6833 | CG5643-RC | 2119..2936 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27566205..27566511 | 530..836 | 1535 | 100 | Plus |
3R | 32079331 | 3R | 27565572..27565854 | 19..301 | 1415 | 100 | Plus |
3R | 32079331 | 3R | 27565917..27566152 | 301..536 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:55:37 has no hits.
BO05662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:02 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-PC | 755..1575 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:13 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5643-PE | 755..1575 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:28 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 2119..2941 | 13..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:54 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 2119..2941 | 13..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:54 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27565567..27565854 | 13..301 | 99 | <- | Plus |
3R | 27565918..27566147 | 302..531 | 100 | <- | Plus |
3R | 27566207..27566511 | 532..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:28 Download gff for
BO05662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23391289..23391576 | 13..301 | 99 | <- | Plus |
arm_3R | 23391640..23391869 | 302..531 | 100 | <- | Plus |
arm_3R | 23391929..23392233 | 532..836 | 100 | | Plus |
BO05662.5prime Sequence
925 bp (875 high quality bases) assembled on 2005-11-29
> BO05662.5prime
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGGAGGATCCATTCCTTAACGA
ACCCGGTGGTGCGTGGCCTGCTGAA
BO05662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5643-PB | 1575 | wdb-RB | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PD | 1575 | wdb-RD | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PF | 1575 | wdb-RF | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PG | 1575 | wdb-RG | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PA | 1575 | wdb-RA | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PC | 1575 | wdb-RC | 1..887 | 17..903 | 4385 | 99.7 | Plus |
CG5643-PE | 1575 | wdb-RE | 1..887 | 17..903 | 4385 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 1618..2525 | 17..925 | 4490 | 99.7 | Plus |
wdb-RE | 3635 | CG5643-RE | 1534..2441 | 17..925 | 4490 | 99.7 | Plus |
wdb-RC | 6833 | CG5643-RC | 1365..2272 | 17..925 | 4490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27567152..27567353 | 355..154 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 27566861..27567056 | 550..355 | 980 | 100 | Minus |
3R | 32079331 | 3R | 27566605..27566797 | 741..549 | 965 | 100 | Minus |
3R | 32079331 | 3R | 27566358..27566543 | 925..739 | 855 | 98.4 | Minus |
3R | 32079331 | 3R | 27567412..27567554 | 159..17 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 18175660..18175925 | 404..669 | 325 | 74.8 | Plus |
3R | 32079331 | 3R | 18176003..18176210 | 681..888 | 200 | 73.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:54:14 has no hits.
BO05662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:03 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-PC | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:15 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5643-PE | 1..906 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:57:19 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2272 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:06 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2272 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:06 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27566358..27566540 | 742..925 | 98 | <- | Minus |
3R | 27566605..27566795 | 551..741 | 100 | <- | Minus |
3R | 27566861..27567055 | 356..550 | 100 | <- | Minus |
3R | 27567152..27567351 | 156..355 | 100 | <- | Minus |
3R | 27567416..27567554 | 17..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:57:19 Download gff for
BO05662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23392080..23392262 | 742..925 | 98 | <- | Minus |
arm_3R | 23392327..23392517 | 551..741 | 100 | <- | Minus |
arm_3R | 23392583..23392777 | 356..550 | 100 | <- | Minus |
arm_3R | 23392874..23393073 | 156..355 | 100 | <- | Minus |
arm_3R | 23393138..23393276 | 17..155 | 100 | | Minus |
BO05662.complete Sequence
1606 bp (1606 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630124
> BO05662.complete
GAAGTTATCAGTCGACATGTCATCGGGCACGTTTGTGGATCGAATCGACC
CGTTCGCCAAACGTTCGCTCAAGAAGAAGGGTAAAAAGAGTCAAGGTTCC
TCGCGCTACAGAAATTCTCAGGATGTTGAGCTGCAGCAATTGCCGCCGCT
GAAAGCTGATTGCTCCAGCCTAGAACAGGAGGAGCTGTTCATAAGGAAGC
TGCGCCAGTGTTGCGTGTCCTTTGACTTTATGGATCCCGTGACGGACTTG
AAGGGCAAGGAGATCAAACGGGCCGCGCTCAATGACCTATCCACCTATAT
AACACATGGGCGCGGCGTGCTTACGGAACCGGTTTATCCGGAAATAATTC
GTATGATTTCTTGCAACCTATTTCGCACGTTGCCGCCCAGTGAGAACCCT
GATTTCGATCCCGAGGAGGACGATCCGACACTGGAGGCGTCCTGGCCACA
CCTCCAACTGGTGTACGAGGTCTTCTTGCGGTTTCTGGAGTCGCAGGATT
TCCAAGCAACTATCGGCAAGCGTGTGATCGATCAAAAGTTTGTCTTGCAG
CTTTTGGAACTTTTCGACTCGGAGGATCCCAGGGAGCGGGACTTTCTGAA
GACGGTATTGCATCGTATATATGGAAAATTCTTAGGACTGCGGGCTTTTA
TACGAAAACAGATTAACAACATATTCTTGCGATTCATTTACGAAACGGAG
CACTTTAATGGAGTCGGTGAGCTCTTGGAAATCCTTGGCAGTATCATCAA
CGGATTCGCCTTGCCCCTGAAGGCCGAACACAAACAGTTTCTGGTTAAGG
TCCTATTGCCACTGCACAAAGTCAAATGCCTGTCGCTCTACCACGCTCAA
CTGGCGTATTGCATTGTACAATTCCTAGAGAAGGATCCATTCCTTACCGA
ACCGGTGGTGCGTGGCCTGCTGAAGTTCTGGCCCAAGACGTGTTCCCAGA
AGGAGGTCATGTTCCTGGGCGAGATTGAGGAGATCCTCGATGTGATCGAT
CCGCCGCAGTTTGTCAAGATTCAGGAGCCGCTATTCCGTCAGATTGCAAA
ATGCGTGTCGAGTCCACATTTTCAGGTTGCTGAGCGAGCTCTTTATCTGT
GGAACAATGAGTACGCCATGTCGCTAATCGAGGAGAACAATGCGGTCATC
ATGCCGATCATGTTCCCGGCCCTATACCGCATCAGCAAGGAACACTGGAA
TCAAACTATCGTGGCGCTCGTATACAACGTTTTGAAGACGTTCATGGAGA
TGAATTCGAAACTGTTCGACGAGCTTACCTCCAGCTACAAGGCGGAGCGG
CAAAAGGAAAAAAAACGTGAGCGTGACCGCGAGGAACTGTGGAAGAAACT
GCACGAACTCGAATCCAATCGTTCTAGTGGGCGCACCGCCGGCGGCAGCG
CCACGACATCGAACAGCGCAGCTTCCGCGGCGTCAACGTCCCTGCAGCCA
CCCAGCTCCGCTGGCCTGAACTCTCATCAGCAGCAGTCGAATAGCGGCAG
CAGCGGTAGCCTGTCCAGCGGCGGTGCCGGCGGCGACAATAATCCTGCGA
CCACAAATGCGAAAATCAAACAGGATAAGGCGGACAACGCAAGCTTTCTA
GACCAT
BO05662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 1575 | CG5643-PF | 1..1572 | 17..1588 | 7860 | 100 | Plus |
wdb-RE | 1575 | CG5643-PE | 1..1572 | 17..1588 | 7860 | 100 | Plus |
wdb-RC | 1575 | CG5643-PC | 1..1572 | 17..1588 | 7860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-RF | 7086 | CG5643-RF | 1618..3189 | 17..1588 | 7860 | 100 | Plus |
wdb-RE | 3635 | CG5643-RE | 1534..3105 | 17..1588 | 7860 | 100 | Plus |
wdb-RC | 6833 | CG5643-RC | 1365..2936 | 17..1588 | 7860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27566205..27566543 | 1077..739 | 1695 | 100 | Minus |
3R | 32079331 | 3R | 27565572..27565854 | 1588..1306 | 1415 | 100 | Minus |
3R | 32079331 | 3R | 27565917..27566152 | 1306..1071 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 27567152..27567353 | 355..154 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 27566861..27567056 | 550..355 | 980 | 100 | Minus |
3R | 32079331 | 3R | 27566605..27566797 | 741..549 | 965 | 100 | Minus |
3R | 32079331 | 3R | 27567412..27567554 | 159..17 | 700 | 99.3 | Minus |
3R | 32079331 | 3R | 18175660..18175925 | 404..669 | 325 | 74.8 | Plus |
3R | 32079331 | 3R | 18176003..18176210 | 681..888 | 215 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:13 has no hits.
BO05662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:56 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1..1575 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:27 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1203..2779 | 17..1594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:10 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2936 | 17..1590 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:57 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RF | 1203..2779 | 17..1594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:41 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wdb-RC | 1365..2936 | 17..1590 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:41 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27566861..27567055 | 356..550 | 100 | <- | Minus |
3R | 27567152..27567351 | 156..355 | 100 | <- | Minus |
3R | 27567416..27567554 | 17..155 | 100 | | Minus |
3R | 27566605..27566795 | 551..741 | 100 | <- | Minus |
3R | 27565570..27565854 | 1306..1590 | 99 | <- | Minus |
3R | 27565918..27566147 | 1076..1305 | 100 | <- | Minus |
3R | 27566207..27566540 | 742..1075 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:10 Download gff for
BO05662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23392874..23393073 | 156..355 | 100 | <- | Minus |
arm_3R | 23391292..23391576 | 1306..1590 | 99 | <- | Minus |
arm_3R | 23391640..23391869 | 1076..1305 | 100 | <- | Minus |
arm_3R | 23391929..23392262 | 742..1075 | 100 | <- | Minus |
arm_3R | 23392327..23392517 | 551..741 | 100 | <- | Minus |
arm_3R | 23392583..23392777 | 356..550 | 100 | <- | Minus |
arm_3R | 23393138..23393276 | 17..155 | 100 | | Minus |
BO05662.pep Sequence
Translation from 16 to 1606
> BO05662.pep
MSSGTFVDRIDPFAKRSLKKKGKKSQGSSRYRNSQDVELQQLPPLKADCS
SLEQEELFIRKLRQCCVSFDFMDPVTDLKGKEIKRAALNDLSTYITHGRG
VLTEPVYPEIIRMISCNLFRTLPPSENPDFDPEEDDPTLEASWPHLQLVY
EVFLRFLESQDFQATIGKRVIDQKFVLQLLELFDSEDPRERDFLKTVLHR
IYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVGELLEILGSIINGFALP
LKAEHKQFLVKVLLPLHKVKCLSLYHAQLAYCIVQFLEKDPFLTEPVVRG
LLKFWPKTCSQKEVMFLGEIEEILDVIDPPQFVKIQEPLFRQIAKCVSSP
HFQVAERALYLWNNEYAMSLIEENNAVIMPIMFPALYRISKEHWNQTIVA
LVYNVLKTFMEMNSKLFDELTSSYKAERQKEKKRERDREELWKKLHELES
NRSSGRTAGGSATTSNSAASAASTSLQPPSSAGLNSHQQQSNSGSSGSLS
SGGAGGDNNPATTNAKIKQDKADNASFLDH
BO05662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wdb-PF | 524 | CG5643-PF | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PE | 524 | CG5643-PE | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PC | 524 | CG5643-PC | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PA | 524 | CG5643-PA | 1..524 | 1..524 | 2707 | 100 | Plus |
wdb-PD | 524 | CG5643-PD | 1..524 | 1..524 | 2707 | 100 | Plus |