Clone Sequence Records
BO05663.3prime Sequence
800 bp (798 high quality bases) assembled on 2005-12-02
> BO05663.3prime
ATGGTCTAGAAAGCTTGCACTGTTCGAGCGGGCCGCCTCCCGCTTGCCCT
GAATCCAGCTCTCAATTTCCTGCTTCAGAGCCTCGTTGGACTTGACCTTA
TCCATGGTGAGCGGTTCGCGGTTAAAGGGATCGGTCTGATCGCTCAGAAG
ATGACGGGCGATGGTGGAACGATCCACTGTTACCTTGGAGCTGGGCAGCA
CCACAGGGTCGGTCATAAGCGTTGAGATAATCGGATCGAGGTACTCTTCC
GGCGCATCAGCCAGCAGCTCCTGCTCCTCCTTGTATTGAGCACCCATACG
CGCTACCTTCACAGCAAACTCGGACATGTCGCCTATAAGTTGGCCGCCTC
CGATTCGGATCAGGATGTTCTCGGCATAGCTGAAGAGCTGTTCGCTGTAT
GAACGTCCATCCTGCGATACGGCCAAACAGAAGCTCTCATCGGAGCTTAG
GTTGATGTAGATGTGAGAGATCTCGATCACCGTCTGAGCCGGATCGAATT
CGAACTCCTTCTTGTCCTTTACCTTGAAGCGCTCCTTCTTTGGGCCAACC
AAATTCAGCAGAAAATAATTCAGCATGGCTGCCATGCGATCGACCATGCT
GTTGTGGCAGAAAATGCTTTTGATTTTCGAGGTGAGCAGCTTGAGGAGAT
TTATGGTGTCCCTACCGATAATGTTGTCAAATCGAGCTAGCATGCCCAGG
TGCTGGAGGTTCGTCATGTGCTGCTCACGCTCAGTGTGCGGTAGGCTTTC
CCACTCACCATTGTCCTGCGCCTGCTGAAGCTGTTTGATCTGCTCCAGAT
BO05663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-PA | 2982 | CG11070-RA | 2198..2979 | 800..19 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-RA | 3391 | CG11070-RA | 2273..3054 | 800..19 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6660915..6661696 | 800..19 | 3910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:54:13 has no hits.
BO05663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:04 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-PA | 2198..2982 | 16..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:16 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-PA | 2198..2982 | 16..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:02:37 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 2273..3054 | 19..800 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:15:38 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 2273..3054 | 19..800 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:15:38 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6660915..6661696 | 19..800 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:02:37 Download gff for
BO05663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6660915..6661696 | 19..800 | 100 | | Minus |
BO05663.5prime Sequence
883 bp (799 high quality bases) assembled on 2005-12-02
> BO05663.5prime
GAAGTTATCAGTCGACATGACAAGCATCGAGGAGAATCCGTTCGCGGCTC
TGCTGCAGGAGGGCGCCAACTCCGATGGCGTGCCGCACAAACTGGTCGAG
GAGGTGCTCCTCTTCACGCTGAACAAGGCGTCCTCTTCCGCGGTCCTGTG
CCTGGCCGACGTGGTGGTGGAGACCAGCGAGGAGATGCTAAGTGAGGACC
TGGTGGCCCACGCCCTCTTTGAGCGCCTGATGCTGGCCGAGACCAGCCAG
TATGCAGCGGGCAATGCCAGTGAAATGGCCATGGAGCGGCGAGCTATGCG
TTACCTTAAAGGTGCCTTCACGCGATGCGGACTCATTCAGGCGGAGAGGA
AAATCGATTGCTCCAAGATACTAGCGCTTATCCTAAACAATGCCAGCACC
TGCATGCGCCAGCCGGACCTCTTTGCACCGCAATCCTTCGGTGCCCAGTG
GATGGAGATGTTCGAGCAGGATGAGGATGAGCACGATACCAGCACGCAGG
AGTTTTTGATACGCGTCACCTGCAAGGTGATGGAGGAGGTGGAGCCGATT
GAGGCCCTGGGCGCCCTAAAGGCCATCTTCTACCCTGTGCTCACCGAGCT
GCAGAAGAACATCGCCAAGCTGAACCTCATTACAATGAAGAAGAACACAT
TCTGGATCCTCGGATATTTCGTGCGCGACAAGCGAGCAGCTGTTCTTGGA
GAGCTGCTAATTGACTACACCACTCCCAATCCCAGAGCTAGCGGTAGCGA
ATATATGGACACTTTGTTGGGCAGTCTACTGTGCATCTCAATCCTGCCCA
AGACCCAAACAGGCAAATACGAGTTTTTCCAGGAGCTGTCAATAAACCAA
ACTGACGAAGCTCTGTGGGCTCTATTGTCGCAT
BO05663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-PA | 2982 | CG11070-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-RA | 3391 | CG11070-RA | 76..942 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6658592..6659321 | 17..746 | 3650 | 100 | Plus |
| 2L | 23513712 | 2L | 6659378..6659518 | 743..883 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:54:25 has no hits.
BO05663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:05 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:17 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:02:39 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 74..942 | 13..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:15:40 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 74..942 | 13..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:15:40 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6658590..6659318 | 13..743 | 99 | -> | Plus |
| 2L | 6659379..6659518 | 744..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:02:39 Download gff for
BO05663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6658590..6659318 | 13..743 | 99 | -> | Plus |
| arm_2L | 6659379..6659518 | 744..883 | 100 | | Plus |
BO05663.complete Sequence
3013 bp assembled on 2008-08-14
GenBank Submission: FJ630125
> BO05663.complete
GAAGTTATCAGTCGACATGACAAGCATCGAGGAGAATCCGTTCGCGGCTC
TGCTGCAGGAGGGCGCCAACTCCGATGGCGTGCCGCACAAACTGGTCGAG
GAGGTGCTCCTCTTCACGCTGAACAAGGCGTCCTCTTCCGCGGTCCTGTG
CCTGGCCGACGTGGTGGTGGAGACCAGCGAGGAGATGCTAAGTGAGGACC
TGGTGGCCCACGCCCTCTTTGAGCGCCTGATGCTGGCCGAGACCAGCCAG
TATGCAGCGGGCAATGCCAGTGAAATGGCCATGGAGCGGCGAGCTATGCG
TTACCTTAAAGGTGCCTTCACGCGATGCGGACTCATTCAGGCGGAGAGGA
AAATCGATTGCTCCAAGATACTAGCGCTTATCCTAAACAATGCCAGCACC
TGCATGCGCCAGCCGGACCTCTTTGCACCGCAATCCTTCGGTGCCCAGTG
GATGGAGATGTTCGAGCAGGATGAGGATGAGCACGATACCAGCACGCAGG
AGTTTTTGATACGCGTCACCTGCAAGGTGATGGAGGAGGTGGAGCCGATT
GAGGCCCTGGGCGCCCTAAAGGCCATCTTCTACCCTGTGCTCACCGAGCT
GCAGAAGAACATCGCCAAGCTGAACCTCATTACAATGAAGAAGAACACAT
TCTGGATCCTCGGATATTTCGTGCGCGACAAGCGAGCAGCTGTTCTTGGA
GAGCTGCTAATTGACTACACCACTCCCAATCCCAGAGCTAGCGGTAGCGA
ATATATGGACACTTTGTTGGGCAGTCTACTGTGCATCTCAATCCTGCCCA
AGACCCAAACAGGCAAATACGAGTTTTTCCAGGAGCTGTCAATAAACCAA
ACTGACGAAGCTCTGTGGGCTCTATTGTCGCATCACCAGCAGTCCATTTT
CCTGCTGGTCAAGCAACTCCTCGTACTCTCACCCGAAACAAAGAAAAAGA
CGCTTCAATGGGTAGGCAATTGCCTGGATGCAAATGTGCCGCGTGGTCAC
CTATGGAGCAGCATCAATGCCAGCCTGGAGCAAACAGCTCACAGCACGTC
AAGCGATGCCTTCATGACCAACCTGACTGCAGTTCTAGTTCGTCTCTGTG
CTCCCCTATGTATGCCCTCGTTAAAGGTTCTCCTGGTGGACCCTACATAT
TGTGCAGTTCCCAACAAAGATCGGCAGGCGAAGGGCGTTAGTATGCTAAG
GGCCCACGCCGAGACTTGCCTGCTCACCAGCGAAGAGGGCGAGGAGCGTT
TGACGGCCGAAAAGTACAATTTCGTGACGGAGATCTTCTACATGACACAC
AAATGCTTCGAGCTCTCCAATATTCCGTGCATTGAGCGCTTCGTTCGGGT
GCTGCGCGAGCTGCAAAACACGCAGATGGCGTACGGAGAGATCGTGAACA
GCGATCCGAATAGCGAGGTGGCCAAAAACCTATTTCGCATGATAAGGGAC
CAGATACAGCAAGTGCTGACCATCAAGAACACGCTCGCCGAGCCCACCAA
TGACATGTACCTGTTGAAATTCTTCGAAGCTTCGGCTATTTGGCTCACTG
AGATTGCCATGCTCCCGCGTGAGATTTACGAGCAGTGCCTGGACAAGCGC
GACTTTTCCCCACAGGTTTTCCGCAACATGGAGCTGCTCTCAGACACACC
GCCCTTTGTGGCACCCTATATGCAATCGGTGCCAGAGAGCATTATCGACA
ACATCTCGGCATTTTTGAATGCGGCCCGGAAACTAAACGGCGAACAATAC
ATCAATATATATTTCTCTGCCCATGATGCCTTTTTCAAGATGATAATTCT
ATTCATGGGCAGCTCAGCGCTGGTCAAGAATCCTCACCTTCGGGCCAAAC
TGGCTGAAGCATTGGAATTTCTCTTGCCCTCACGGATTATGGGAAGCCAT
CGCAAGACTTTTGTCAGCCATGTCTTCGACAACCATCCGGATCGGTTGAA
GGTGGTGCGCAGCCTGTTGAACGTTTTCGTAAGCATTGAGATGACTGGAC
AGTCAGTGCAATTCGAACAAAAATTCAACTATCGCCGGCCCATGTACGCT
ATAATGGAGTTCCTGTGGACCAAACCCGAGCACGTTCAGTGCTTTCGTGA
CCTGGCAGTCGAAGCGGAGCAGAATATGGATGCCATTGAGCCGCCCATAT
TTCTGCGCTTCATTAATCTGCTTATCAATGATGCCATCTTTCTGTTGGAC
GAGTCGTTGTCCAATCTGGAGCAGATCAAACAGCTTCAGCAGGCGCAGGA
CAATGGTGAGTGGGAAAGCCTACCGCACACTGAGCGTGAGCAGCACATGA
CGAACCTCCAGCACCTGGGCATGCTAGCTCGATTTGACAACATTATCGGT
AGGGACACCATAAATCTCCTCAAGCTGCTCACCTCGAAAATCAAAAGCAT
TTTCTGCCACAACAGCATGGTCGATCGCATGGCAGCCATGCTGAATTATT
TTCTGCTGAATTTGGTTGGCCCAAAGAAGGAGCGCTTCAAGGTAAAGGAC
AAGAAGGAGTTCGAATTCGATCCGGCTCAGACGGTGATCGAGATCTCTCA
CATCTACATCAACCTAAGCTCCGATGAGAGCTTCTGTTTGGCCGTATCGC
AGGATGGACGTTCATACAGCGAACAGCTCTTCAGCTATGCCGAGAACATC
CTGATCCGAATCGGAGGCGGCCAACTTATAGGCGACATGTCCGAGTTTGC
TGTGAAGGTAGCGCGTATGGGTGCTCAATACAAGGAGGAGCAGGAGCTGC
TGGCTGATGCGCCGGAAGAGTACCTCGATCCGATTATCTCAACGCTTATG
ACCGACCCTGTGGTGCTGCCCAGCTCCAAGGTAACAGTGGATCGTTCCAC
CATCGCCCGTCATCTTCTGAGCGATCAGACCGATCCCTTTAACCGCGAAC
CGCTCACCATGGATAAGGTCAAGTCCAACGAGGCTCTGAAGCAGGAAATT
GAGAGCTGGATTCAGGGCAAGCGGGAGGCGGCCCGCTCGAACAGTGCAAG
CTTTCTAGACCAT
BO05663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-RA | 2982 | CG11070-PA | 1..2979 | 17..2995 | 14895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-RA | 3391 | CG11070-RA | 76..3054 | 17..2995 | 14895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6659826..6661696 | 1125..2995 | 9355 | 100 | Plus |
| 2L | 23513712 | 2L | 6658592..6659321 | 17..746 | 3650 | 100 | Plus |
| 2L | 23513712 | 2L | 6659378..6659763 | 743..1128 | 1930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:28:16 has no hits.
BO05663.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:53 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 47..3027 | 13..2995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:14 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 76..3054 | 17..2997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:42 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 49..3027 | 17..2997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:26 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11070-RA | 76..3054 | 17..2997 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:26 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6658592..6659318 | 17..743 | 100 | -> | Plus |
| 2L | 6659379..6659761 | 744..1126 | 100 | -> | Plus |
| 2L | 6659828..6661696 | 1127..2997 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:14 Download gff for
BO05663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6658592..6659318 | 17..743 | 100 | -> | Plus |
| arm_2L | 6659379..6659761 | 744..1126 | 100 | -> | Plus |
| arm_2L | 6659828..6661696 | 1127..2997 | 99 | | Plus |
BO05663.pep Sequence
Translation from 16 to 3013
> BO05663.pep
MTSIEENPFAALLQEGANSDGVPHKLVEEVLLFTLNKASSSAVLCLADVV
VETSEEMLSEDLVAHALFERLMLAETSQYAAGNASEMAMERRAMRYLKGA
FTRCGLIQAERKIDCSKILALILNNASTCMRQPDLFAPQSFGAQWMEMFE
QDEDEHDTSTQEFLIRVTCKVMEEVEPIEALGALKAIFYPVLTELQKNIA
KLNLITMKKNTFWILGYFVRDKRAAVLGELLIDYTTPNPRASGSEYMDTL
LGSLLCISILPKTQTGKYEFFQELSINQTDEALWALLSHHQQSIFLLVKQ
LLVLSPETKKKTLQWVGNCLDANVPRGHLWSSINASLEQTAHSTSSDAFM
TNLTAVLVRLCAPLCMPSLKVLLVDPTYCAVPNKDRQAKGVSMLRAHAET
CLLTSEEGEERLTAEKYNFVTEIFYMTHKCFELSNIPCIERFVRVLRELQ
NTQMAYGEIVNSDPNSEVAKNLFRMIRDQIQQVLTIKNTLAEPTNDMYLL
KFFEASAIWLTEIAMLPREIYEQCLDKRDFSPQVFRNMELLSDTPPFVAP
YMQSVPESIIDNISAFLNAARKLNGEQYINIYFSAHDAFFKMIILFMGSS
ALVKNPHLRAKLAEALEFLLPSRIMGSHRKTFVSHVFDNHPDRLKVVRSL
LNVFVSIEMTGQSVQFEQKFNYRRPMYAIMEFLWTKPEHVQCFRDLAVEA
EQNMDAIEPPIFLRFINLLINDAIFLLDESLSNLEQIKQLQQAQDNGEWE
SLPHTEREQHMTNLQHLGMLARFDNIIGRDTINLLKLLTSKIKSIFCHNS
MVDRMAAMLNYFLLNLVGPKKERFKVKDKKEFEFDPAQTVIEISHIYINL
SSDESFCLAVSQDGRSYSEQLFSYAENILIRIGGGQLIGDMSEFAVKVAR
MGAQYKEEQELLADAPEEYLDPIISTLMTDPVVLPSSKVTVDRSTIARHL
LSDQTDPFNREPLTMDKVKSNEALKQEIESWIQGKREAARSNSASFLDH
BO05663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11070-PA | 993 | CG11070-PA | 1..993 | 1..993 | 5071 | 100 | Plus |
| CG9934-PB | 1217 | CG9934-PB | 498..1211 | 240..986 | 609 | 27.3 | Plus |
| CG9934-PA | 1217 | CG9934-PA | 498..1211 | 240..986 | 609 | 27.3 | Plus |
