Clone Sequence Records
BO05664.3prime Sequence
955 bp (746 high quality bases) assembled on 2005-12-02
> BO05664.3prime
ATGGTCTAGAAAGCTTGCGTGCATAAGGATCTCCAGCTGGACGAGCCGCT
GGTTGGTGGTCGATGGCATTCGGTATGGAACGCTGGCAGCCATGTTGGTG
AATGCCTTGGCCCTGTCTCGCAAATGTTTCACGGCGGGCTCCTTATTGAC
GCACTTGCTTTCATCAAAGAAACCGGAAGCTGTTTCATTCGAGTCCATTA
GCTTCACATACTCCTGGTATACAATGTCCATGGACGCCAGCAGGATATCG
GGCAGCACTTTAATGACCTCGGGACCCATCCGCTTTATGTTCGTCACACA
CTCGTCCACTTCCAATGAGCTGGCGGGTATCAGATGATTGTTGGTCAGGA
TTTCTAATGCCGAACGCAATGCGCCTTCGTGATAGTGGTCAAAGAACTTC
ATGACCTTTGTCAGCACCGTATATGTGACAACAACTTGAACCTCTACGTC
CGATTTACGCACGACCAGCGCCGCATCTAGTCGATTGATAATATCGCCCA
GCCGGTTACGCACGCTTCCATTCTGCGTTGGTTGGTGGACCACCTGTGCC
AGTAGCGAGTTCACCAAACGCAGTGCCTTGTCCAGCTGGCCACCAATAAA
GTAGAGCTCGATGGCCAATTCGTAGTCGCCGCGTTTCGACAACTCATCGC
CCACCATTTCGGCCAGAGAGTACTTATCGCATTCATGAATTTGAAATTCC
GCATATATGCCGCCATAGCGCAAGCCGTTTTTCTTATCCTCCGTCCCGAA
NATCAGCTCTAGCATTTCGTCGTCGCATTTCTCAACTAGCAGATCGCAGA
CGCAGGTGAGCATCACGTTGCCGCGTCCGTTCTCGGATTTAAAGTTGCGC
AACAGGTAATAGTAATGCAGCGCCTGCGTGGTGTCCGTTCTCTCAAAGCA
CTTGGTGTACTTGACGATCAGACGCACAAGATTGATTCGTTTCATTGGTT
TTTGG
BO05664.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11092-PA | 2472 | CG11092-RA | 1536..2469 | 952..19 | 4601 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-RA | 2786 | CG11092-RA | 1637..2570 | 952..19 | 4629 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13825000..13825694 | 713..19 | 3475 | 100 | Minus |
| X | 23542271 | X | 13824677..13824916 | 952..713 | 1159 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:44:20 has no hits.
BO05664.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:06 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-PA | 1533..2472 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:18 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-PA | 1533..2472 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:29:54 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 1657..2600 | 10..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:55 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 1634..2577 | 10..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:55 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13824674..13824916 | 713..955 | 98 | -> | Minus |
| X | 13825001..13825701 | 10..712 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:29:54 Download gff for
BO05664.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13718707..13718949 | 713..955 | 98 | -> | Minus |
| arm_X | 13719034..13719734 | 10..712 | 99 | | Minus |
BO05664.5prime Sequence
844 bp (804 high quality bases) assembled on 2005-12-02
> BO05664.5prime
GAAGTTATCAGTCGACATGGATCTGATGGAACTGCTGAAGCAGGCCCAGC
GCCTGACGAACGAGACCAATACGGACACGGAGGTGCCGGGCGTGGAACGG
ACCATGTCCCAGGTTCTGCAGGCAACCAAGGAGTTTCACTCGCGTGTCAC
CCAAATGGGCACCAATGATCTGCAGGCCCACATACTGCTCGGCTCTAAGG
GCGTGGACCTGCCCAAGCTTACACAGAAGCTGGAGTCGCTCAGCGCCCGC
CAAACCTTCGAGCCGATTGATCCGGTGACGGAGACCAATGTGCAGGCCTA
TCTGAAGAACGAGCGGGAGAACGCCATACTCTCAGTTATCGATGAGACGA
ATCGCAGTATATTTAAATCTGTGGAGCGACAGAAGTGGCGTTGCATCTAC
TCGGAGTGGGGCGAGGAGAAGGAAGCGCTGCTAAACGCTCTGGTCGGACC
AAACCAACAGGACTTCCCCGACGTCCAGTTTCAGATAGTGCCCACGGCCA
TGGCTGATGAGCCCACTCCGTACTCCCAACTGAATGGCCATGAGCAGATG
TACGCTGAACAGATCGCCATCCACAACCAGTCGATCATCCTGGGCAGACG
CCCTAACTTGCTGTCGACCCTTGCCCACGTGGTCCAAGACTCCTTCAACG
ATGAGTCCGTAGCCGAGATGTGGAATGTATTGCAGTTTATGACCGCGTTG
CCGCCAGTCTCGAGCACCATCGATCCAATCAAGAATCGTCAGACATCACC
GCAATTCGTTGAGCAGGCCCGCACGTACTTGGAGCGCAGATATAGGACGT
ATATGAGAAAGTTTATCGTCGCGATTTTGGCCAAAGCGCGGCGG
BO05664.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11092-PA | 2472 | CG11092-RA | 1..828 | 17..844 | 4115 | 99.8 | Plus |
| CG7262-PA | 2391 | CG7262-RA | 157..203 | 173..219 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-RA | 2786 | CG11092-RA | 98..929 | 13..844 | 4145 | 99.9 | Plus |
| Nup93-2-RA | 2497 | CG7262-RA | 179..420 | 110..351 | 400 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13823411..13823896 | 359..844 | 2415 | 99.8 | Plus |
| X | 23542271 | X | 13823151..13823331 | 178..358 | 905 | 100 | Plus |
| X | 23542271 | X | 13822923..13823087 | 13..177 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 14897895..14898067 | 351..179 | 310 | 78.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:57:32 has no hits.
BO05664.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:07 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:19 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:45 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 113..952 | 1..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:38 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 90..929 | 1..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:38 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13822915..13823087 | 1..177 | 97 | -> | Plus |
| X | 13823151..13823331 | 178..358 | 100 | -> | Plus |
| X | 13823411..13823896 | 359..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:45 Download gff for
BO05664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13716948..13717120 | 1..177 | 97 | -> | Plus |
| arm_X | 13717184..13717364 | 178..358 | 100 | -> | Plus |
| arm_X | 13717444..13717929 | 359..844 | 99 | | Plus |
BO05664.complete Sequence
2503 bp assembled on 2008-08-14
GenBank Submission: FJ630126
> BO05664.complete
GAAGTTATCAGTCGACATGGATCTGATGGAACTGCTGAAGCAGGCCCAGC
GCCTGACGAACGAGACCAATACGGACACGGAGGTGCCGGGCGTGGAACGG
ACCATGTCCCAGGTTCTGCAGGCAACCAAGGAGTTTCACTCGCGTGTCAC
CCAAATGGGCACCAATGATCTGCAGGCCCACATACTGCTCGGCTCTAAGG
GCGTGGACCTGCCCAAGCTTACACAGAAGCTGGAGTCGCTCAGCGCCCGC
CAAACCTTCGAGCCGATTGATCCGGTGACGGAGACCAATGTGCAGGCCTA
TCTGAAGAACGAGCGGGAGAACGCCATACTCTCAGTTATCGATGAGACGA
ATCGCAGTATATTTAAATCTGTGGAGCGACAGAAGTGGCGTTGCATCTAC
TCGGAGTGGGGCGAGGAGAAGGAAGCGCTGCTAAACGCTCTGGTCGGACC
AAACCAACAGGACTTCCCCGACGTCCAGTTTCAGATAGTGCCCACGGCCA
TGGCTGATGAGCCCACTCCGTACTCCCAACTGAATGGCCATGAGCAGATG
TACGCTGAACAGATCGCCATCCACAACCAGTCGATCATCCTGGGCAGACG
CCCTAACTTGCTGTCGACCCTTGCCCACGTGGTCCAAGACTCCTTCAACG
ATGAGTCCGTAGCCGAGATGTGGAATGTATTGCAGTTTATGACCGCGTTG
CCGCCAGTCTCGAGCACCATCGATCCAATCAAGAATCGTCAGACATCACC
GCAATTCGTTGAGCAGGCCCGCACGTACTTGGAGCGCAGATATAGGACGT
ATATGAGAAAGTTTATCGTCGCGAATTTGGCCAAAGCGCGGCGGGGAGGA
ATCCCCAGCGTGTACCATATGGTCCGCTCCTATGTGGGCGTTACTCTCCA
GGGGCAGCGAGCCCTCTACGGGCTGCATGACGTGAACAATGGCCAGCCAT
TGTGGCCACATGTTTACTATAGCTTGCGGAGTGGCGATATGGACGCGGCT
GCGTTGTATCTCAAGGAATCGGGAACCTGCCCCGACCTGCTTACGCTATT
GACGTTGCGAAAGAACGGCGATAGGGACAACTTGATGGTAAAGCTTGAGG
GTCAGCTAAAGTTGGAGTACAACAGTAGACTGCGCGCCTGTACGGATCCC
TACAAAAAGGCGGTATACGTCGTATTGTTGGCGTGTGATCCGCACTTCAC
TCACGTAGAACTAATGCGCAGCATCGACGACTTCCTGTGGATGCAACTGT
CCATTCTGCGCAGGTCGGACCAAAGCGACAGCAACACGGAGCAGCTAACG
TTCAGCGGCCTGCAATCGCTCATTTTAGAAAAGTACGGCGAGAACTACTT
CAATGCGCGCGAGAAGGCGGCGCTATACTTCCAGGTGCTGACGCTTACCG
GCCAATTTGAGGCCGCCATTGAATTCCTCGCCCGCACCGAGAAAAATCGA
ACGCACGCTATCCACATGGCCATTGCCCTAAACGAGATATCCATGCTGGG
AACACCACGTTCCGTGGAACAATCCCTTCTGAGCTCCGACCCTGACGACC
CAAAACCAATGAAACGACTCAATCTTGTGCGTCTGATCGTCATGTACACC
AAGTGCTTTGAGAGAACGGACACCACGCAGGCGCTGCATTACTATTACCT
GTTGCGCAACTTTAAATCCGAGAACGGACGCGGCAACGTGATGCTCACCT
GCGTCTGCGATCTGCTAGTTGAGAAATGCGACGACGAAATGCTAGAGCTG
ATTTTCGGGACGGAGGATAAGAAAAACGGCTTGCGCTATGGCGGCATATA
TGCGGAATTTCAAATTCATGAATGCGATAAGTACTCTCTGGCCGAAATGG
TGGGCGATGAGTTGTCGAAACGCGGCGACTACGAATTGGCCATCGAGCTC
TACTTTATTGGTGGCCAGCTGGACAAGGCACTGCGTTTGGTGAACTCGCT
ACTGGCACAGGTGGTCCACCAACCAACGCAGAATGGAAGCGTGCGTAACC
GGCTGGGCGATATTATCAATCGACTAGATGCGGCGCTGGTCGTGCGTAAA
TCGGACGTAGAGGTTCAAGTTGTTGTCACATATACGGTGCTGACAAAGGT
CATGAAGTTCTTTGACCACTATCACGAAGGCGCATTGCGTTCGGCATTAG
AAATCCTGACCAACAATCATCTGATACCCGCCAGCTCATTGGAAGTGGAC
GAGTGTGTGACGAACATAAAGCGGATGGGTCCCGAGGTCATTAAAGTGCT
GCCCGATATCCTGCTGGCGTCCATGGACATTGTATACCAGGAGTATGTGA
AGCTAATGGACTCGAATGAAACAGCTTCCGGTTTCTTTGATGAAAGCAAG
TGCGTCAATAAGGAGCCCGCCGTGAAACATTTGCGAGACAGGGCCAAGGC
ATTCACCAACATGGCTGCCAGCGTTCCATACCGAATGCCATCGACCACCA
ACCAGCGGCTCGTCCAGCTGGAGATCCTTATGCACGCAAGCTTTCTAGAC
CAT
BO05664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-RA | 2472 | CG11092-PA | 1..2469 | 17..2485 | 12345 | 100 | Plus |
| Nup93-2-RA | 2391 | CG7262-PA | 94..335 | 110..351 | 400 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-RA | 2786 | CG11092-RA | 98..2570 | 13..2485 | 12365 | 100 | Plus |
| Nup93-2-RA | 2497 | CG7262-RA | 179..420 | 110..351 | 400 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13823411..13824216 | 359..1164 | 4030 | 100 | Plus |
| X | 23542271 | X | 13825000..13825694 | 1791..2485 | 3475 | 100 | Plus |
| X | 23542271 | X | 13824287..13824916 | 1162..1791 | 3150 | 100 | Plus |
| X | 23542271 | X | 13823151..13823331 | 178..358 | 905 | 100 | Plus |
| X | 23542271 | X | 13822923..13823087 | 13..177 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 14897895..14898067 | 351..179 | 310 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:52:47 has no hits.
BO05664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:30 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-RA | 113..2600 | 1..2494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:09 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 125..2593 | 17..2487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:58 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-RA | 125..2593 | 17..2487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:14 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 102..2570 | 17..2487 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:14 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13822927..13823087 | 17..177 | 100 | -> | Plus |
| X | 13823151..13823331 | 178..358 | 100 | -> | Plus |
| X | 13823411..13824214 | 359..1162 | 100 | -> | Plus |
| X | 13824288..13824916 | 1163..1791 | 100 | -> | Plus |
| X | 13825001..13825694 | 1792..2487 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:09 Download gff for
BO05664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13716960..13717120 | 17..177 | 100 | -> | Plus |
| arm_X | 13717184..13717364 | 178..358 | 100 | -> | Plus |
| arm_X | 13717444..13718247 | 359..1162 | 100 | -> | Plus |
| arm_X | 13718321..13718949 | 1163..1791 | 100 | -> | Plus |
| arm_X | 13719034..13719727 | 1792..2487 | 99 | | Plus |
BO05664.pep Sequence
Translation from 16 to 2503
> BO05664.pep
MDLMELLKQAQRLTNETNTDTEVPGVERTMSQVLQATKEFHSRVTQMGTN
DLQAHILLGSKGVDLPKLTQKLESLSARQTFEPIDPVTETNVQAYLKNER
ENAILSVIDETNRSIFKSVERQKWRCIYSEWGEEKEALLNALVGPNQQDF
PDVQFQIVPTAMADEPTPYSQLNGHEQMYAEQIAIHNQSIILGRRPNLLS
TLAHVVQDSFNDESVAEMWNVLQFMTALPPVSSTIDPIKNRQTSPQFVEQ
ARTYLERRYRTYMRKFIVANLAKARRGGIPSVYHMVRSYVGVTLQGQRAL
YGLHDVNNGQPLWPHVYYSLRSGDMDAAALYLKESGTCPDLLTLLTLRKN
GDRDNLMVKLEGQLKLEYNSRLRACTDPYKKAVYVVLLACDPHFTHVELM
RSIDDFLWMQLSILRRSDQSDSNTEQLTFSGLQSLILEKYGENYFNAREK
AALYFQVLTLTGQFEAAIEFLARTEKNRTHAIHMAIALNEISMLGTPRSV
EQSLLSSDPDDPKPMKRLNLVRLIVMYTKCFERTDTTQALHYYYLLRNFK
SENGRGNVMLTCVCDLLVEKCDDEMLELIFGTEDKKNGLRYGGIYAEFQI
HECDKYSLAEMVGDELSKRGDYELAIELYFIGGQLDKALRLVNSLLAQVV
HQPTQNGSVRNRLGDIINRLDAALVVRKSDVEVQVVVTYTVLTKVMKFFD
HYHEGALRSALEILTNNHLIPASSLEVDECVTNIKRMGPEVIKVLPDILL
ASMDIVYQEYVKLMDSNETASGFFDESKCVNKEPAVKHLRDRAKAFTNMA
ASVPYRMPSTTNQRLVQLEILMHASFLDH
BO05664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-PA | 823 | CG11092-PA | 1..823 | 1..823 | 4228 | 100 | Plus |
| Nup93-2-PA | 796 | CG7262-PA | 1..796 | 1..823 | 1725 | 44.5 | Plus |
