Clone BO05665 Report

Search the DGRC for BO05665

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptAats-cys-RA
Protein status:BO05665.pep: Imported from assembly
Sequenced Size:2257

Clone Sequence Records

BO05665.3prime Sequence

869 bp (773 high quality bases) assembled on 2005-12-02

> BO05665.3prime
ATGGTCTAGAAAGCTTGCGGCTTTCTCAATTGATGCCAAATACTCATTGT
AACGCTGTTCCTGCTGCTGTTGGAGTTTCTGCAGCTTCTTGATCTGTCCT
TTACTGACTTCTTTGCCCTCCTTGTCGTGAGTGGGAAGGCCATTTTCGTC
GAACGCTGAGTACTTTTCGGTTTCGGCCAGGAACATTTCCTTGGGATTCA
CACGTCGCTGGGCTTCTTTCGCAGCTGCAGCCTCCGCAGCCGCCTGCTTC
TTGCGCTCCTTTTCTGCTGCCTTCTCCGCTTCGGCGGCCAGCTTTGCCTC
CCGTTCTCGTAAAAGTGAGTCGCGGTCGACTAGCTTTACGGCATACTTTC
CAATATCCTTGTCCTCCAGTCGCACGCCCAAATTGGGCAGCACATTGTCG
CGTAGATCATCGCAGAGCTTCAGGATGTCGAAGGCCTTCAGAGTTTTGGC
TTGCTCCCGCACCAAGTAGCGGAATTCAGCCAGCGATTGAACGTAAGGCA
AAACCGTAGTTTCTAAATCCGCGCCGGCAGCTTGTGCTCCCGAGCCACCA
CTAACGGGGAAGCCAATGCCACCGCGAGGACCAGATATTGCGCCAAACAC
GTGCAACAGATCGGTGATATATGTGGCTACGTTTCGGAGCAGCAGACTGT
TGAGTCTAGTCTTATTGTCGCGAATGTAGACATTGGACACGGATACCAGC
TCTCGAATGGCGTCAAGGGCGCTGCGAGTATCAATGTTGTCACACAAGCT
GGCGTGTACTTGGACCTGAGCATTTGAGAATTTCTTCTGCAAAGCCGCCT
CAACTTCTGTCCAGGCATCAAACTGCCGGCGGGGCTCTTCGGAGAGCACA
TGCCGCGTCAAATCCTTGA

BO05665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8431-PA 2226 Aats-cys-RA 1373..2223 869..19 4230 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-RA 2453 CG8431-RA 1462..2312 869..19 4240 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16144979..16145579 741..141 3005 100 Minus
2R 25286936 2R 16144789..16144917 869..741 630 99.2 Minus
2R 25286936 2R 16145643..16145765 141..19 615 100 Minus
Blast to na_te.dros performed 2015-02-13 15:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6791 114..54 110 68.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6812 114..54 110 68.9 Minus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4497..4561 114..50 109 63.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6770 89..54 108 77.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2326..2361 89..54 108 77.8 Minus

BO05665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:08 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8431-PA 1374..2226 16..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:21 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8431-PA 1374..2226 16..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:38 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1463..2312 19..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:01 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 1463..2312 19..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:01 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16144790..16144917 741..868 99 -> Minus
2R 16144980..16145578 142..740 100 -> Minus
2R 16145643..16145765 19..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:38 Download gff for BO05665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12033148..12033270 19..141 100   Minus
arm_2R 12032295..12032422 741..868 99 -> Minus
arm_2R 12032485..12033083 142..740 100 -> Minus

BO05665.5prime Sequence

890 bp (729 high quality bases) assembled on 2005-12-02

> BO05665.5prime
GAAGTTATCAGTCGACATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTC
CCGAGGCGGTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGA
CAGAAGGAGGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAG
CTGCGGACCCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTT
ACATTTCCTTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTAC
AACATTCACTATGTGATGAACATTACGGACATCGACGACAAGATCATAAG
GCGTGCGCGGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAA
AGCTGCCACTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGG
TTTCAGGATACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCT
CGACAAGACACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGG
CCGTTGGCAAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTAC
CTAAACGAAGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGG
TGCTCAGATCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGG
AAGACCAGTTCCACAACGACATGAAATCGCTAAATATTCTCCCGCCAGAT
GTTTTAACTCGCGTTTCGGAGTACGTGCCACAAATCGTCACCTTTATTCA
AAAGATTATCGACAATGGCTTGGCCTATGCAGCCAACAACTCCGTTTATT
TCGATGTAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTG
GTGCCAGAAGCATATGGCGACACCAAGTCCCTGCAAGAAG

BO05665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8431-PA 2226 Aats-cys-RA 1..874 17..890 4370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-RA 2453 CG8431-RA 90..963 17..890 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16143480..16143971 194..685 2460 100 Plus
2R 25286936 2R 16144027..16144231 686..890 1025 100 Plus
2R 25286936 2R 16143236..16143414 17..195 895 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:03:17 has no hits.

BO05665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:09 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8431-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:22 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8431-PA 1..874 17..890 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:35 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 90..963 17..890 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:01 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 90..963 17..890 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:01 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16143236..16143414 17..195 100 -> Plus
2R 16143482..16143971 196..685 100 -> Plus
2R 16144027..16144231 686..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:35 Download gff for BO05665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12030741..12030919 17..195 100 -> Plus
arm_2R 12030987..12031476 196..685 100 -> Plus
arm_2R 12031532..12031736 686..890 100   Plus

BO05665.complete Sequence

2257 bp assembled on 2008-08-14

GenBank Submission: FJ630127

> BO05665.complete
GAAGTTATCAGTCGACATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTC
CCGAGGCGGTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGA
CAGAAGGAGGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAG
CTGCGGACCCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTT
ACATTTCCTTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTAC
AACATTCACTATGTGATGAACATTACGGACATCGACGACAAGATCATAAG
GCGTGCGCGGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAA
AGCTGCCACTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGG
TTTCAGGATACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCT
CGACAAGACACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGG
CCGTTGGCAAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTAC
CTAAACGAAGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGG
TGCTCAGATCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGG
AAGACCAGTTCCACAACGACATGAAATCGCTAAATATTCTCCCGCCAGAT
GTTTTAACTCGCGTTTCGGAGTACGTGCCACAAATCGTCACCTTTATTCA
AAAGATTATCGACAATGGCTTGGCCTATGCAGCCAACAACTCCGTTTATT
TCGATGTAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTG
GTGCCAGAAGCATATGGCGACACCAAGTCCCTGCAAGAAGGTGAAGGCGA
TCTGTCCATCGCAGAGGATCGTCTCTCCGAGAAGCGTTCTGCCAATGACT
TTGCCTTGTGGAAGGCGAGCAAAGCCGGCGAACCCTGGTGGGATAGCCCT
TGGGGCAAGGGCCGTCCAGGCTGGCACATTGAATGCTCGGCCATGGCCTC
GGATATCTTTGGGCCCACGTTTGATATACACACTGGCGGTGTGGACTTAA
AGTTCCCTCATCACGACAACGAGCTTGCCCAATCGGAGGCCGCTTTTAAT
GAGTCGGAGTGGGTTAAGTACTTCCTGCACACGGGTCACCTCACCATAGC
TGGCTGCAAGATGTCCAAGTCGCTGAAGAACTTTGTCACCATCCAGGAAG
CTCTTAAAAAGCATTCCGCCACCCAGCTGCGACTGGCGTTCCTGCTACAC
TCGTGGAAGGATACTCTTGACTACTCAGAAAACACCATGGAAATGGCCAC
CCAATACGAAAAGTTCCTCAATGAGTTCTTCCTGAATGTCAAGGATCTGA
CGCGGCATGTGCTCTCCGAAGAGCCCCGCCGGCAGTTTGATGCCTGGACA
GAAGTTGAGGCGGCTTTGCAGAAGAAATTCTCAAATGCTCAGGTCCAAGT
ACACGCCAGCTTGTGTGACAACATTGATACTCGCAGCGCCCTTGACGCCA
TTCGAGAGCTGGTATCCGTGTCCAATGTCTACATTCGCGACAATAAGACT
AGACTCAACAGTCTGCTGCTCCGAAACGTAGCCACATATATCACCGATCT
GTTGCACGTGTTTGGCGCAATATCTGGTCCTCGCGGTGGCATTGGCTTCC
CCGTTAGTGGTGGCTCGGGAGCACAAGCTGCCGGCGCGGATTTAGAAACT
ACGGTTTTGCCTTACGTTCAATCGCTGGCTGAATTCCGCTACTTGGTGCG
GGAGCAAGCCAAAACTCTGAAGGCCTTCGACATCCTGAAGCTCTGCGATG
ATCTACGCGACAATGTGCTGCCCAATTTGGGCGTGCGACTGGAGGACAAG
GATATTGGAAAGTATGCCGTAAAGCTAGTCGACCGCGACTCACTTTTACG
AGAACGGGAGGCAAAGCTGGCCGCCGAAGCGGAGAAGGCAGCAGAAAAGG
AGCGCAAGAAGCAGGCGGCTGCGGAGGCTGCAGCTGCGAAAGAAGCCCAG
CGACGTGTGAATCCCAAGGAAATGTTCCTGGCCGAAACCGAAAAGTACTC
AGCGTTCGACGAAAATGGCCTTCCCACTCACGACAAGGAGGGCAAAGAAG
TCAGTAAAGGACAGATCAAGAAGCTGCAGAAACTCCAACAGCAGCAGGAA
CAGCGTTACAATGAGTATTTGGCATCAATTGAGAAAGCCGCAAGCTTTCT
AGACCAT

BO05665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-RA 2226 CG8431-PA 1..2223 17..2239 11115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-RA 2453 CG8431-RA 90..2312 17..2239 11115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16144027..16144714 686..1373 3440 100 Plus
2R 25286936 2R 16144979..16145579 1517..2117 3005 100 Plus
2R 25286936 2R 16143480..16143971 194..685 2460 100 Plus
2R 25286936 2R 16143236..16143414 17..195 895 100 Plus
2R 25286936 2R 16144773..16144917 1373..1517 725 100 Plus
2R 25286936 2R 16145643..16145765 2117..2239 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:37:56 has no hits.

BO05665.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:46 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 87..2309 17..2239 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:23 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 90..2312 17..2241 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:43 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 87..2309 17..2241 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:17 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-cys-RA 90..2312 17..2241 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:17 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16144773..16144917 1373..1517 100 -> Plus
2R 16143236..16143414 17..195 100 -> Plus
2R 16143482..16143971 196..685 100 -> Plus
2R 16144027..16144713 686..1372 100 -> Plus
2R 16144980..16145578 1518..2116 100 -> Plus
2R 16145643..16145765 2117..2241 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:23 Download gff for BO05665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12032278..12032422 1373..1517 100 -> Plus
arm_2R 12030741..12030919 17..195 100 -> Plus
arm_2R 12030987..12031476 196..685 100 -> Plus
arm_2R 12031532..12032218 686..1372 100 -> Plus
arm_2R 12032485..12033083 1518..2116 100 -> Plus
arm_2R 12033148..12033270 2117..2241 98   Plus

BO05665.pep Sequence

Translation from 16 to 2257

> BO05665.pep
MSKRGQPAWQAPEAVDRPKLKLFNSLTRQKEDFVPLDGNNVTWYSCGPTV
YDASHMGHARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQN
HLFDEYAAEAQKLPLDELLGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQ
RMNDAVEALTKAVGKGDEREISEKRLLYLNEAKDPISDWLDSLKGAQIND
NAVFEALPRYWEDQFHNDMKSLNILPPDVLTRVSEYVPQIVTFIQKIIDN
GLAYAANNSVYFDVNGFDKREKHHYAKLVPEAYGDTKSLQEGEGDLSIAE
DRLSEKRSANDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASDIFGP
TFDIHTGGVDLKFPHHDNELAQSEAAFNESEWVKYFLHTGHLTIAGCKMS
KSLKNFVTIQEALKKHSATQLRLAFLLHSWKDTLDYSENTMEMATQYEKF
LNEFFLNVKDLTRHVLSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLC
DNIDTRSALDAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFG
AISGPRGGIGFPVSGGSGAQAAGADLETTVLPYVQSLAEFRYLVREQAKT
LKAFDILKLCDDLRDNVLPNLGVRLEDKDIGKYAVKLVDRDSLLREREAK
LAAEAEKAAEKERKKQAAAEAAAAKEAQRRVNPKEMFLAETEKYSAFDEN
GLPTHDKEGKEVSKGQIKKLQKLQQQQEQRYNEYLASIEKAASFLDH

BO05665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-cys-PA 741 CG8431-PA 1..741 1..741 3854 100 Plus
CG8257-PB 558 CG8257-PB 132..558 204..654 538 33.6 Plus
CG8257-PA 558 CG8257-PA 132..558 204..654 538 33.6 Plus
CG8257-PB 558 CG8257-PB 48..126 20..98 237 53.2 Plus
CG8257-PA 558 CG8257-PA 48..126 20..98 237 53.2 Plus