Clone Sequence Records
BO05666.3prime Sequence
954 bp (802 high quality bases) assembled on 2005-12-02
> BO05666.3prime
ATGGTCTAGAAAGCTTGCGATGTACTTGAAGCACTTTTGCTTGTCGTGCG
GGATGCGCGTCTTGAAGAGAATGGAGTCCGCTCGGTACTGGGTGTTCAGC
AGCGGCGTATAGCCGAACACCCGGCTAAAGAAATTGATGCACTTGTGCCG
CTCCTGGAAGTGAGTGTCATCCTCGCTGAGTGAAACAGGACAGCCGGGGC
AGCGGAATGTCCACCTGGAGGTGACTTTGACTGGTGGTTTTCTAGTTATA
TGCGATACGAGAAAATTCATGGCAATGTCCTCACAGTTCATGTACTCATC
CACCTTGTCCCTTATCGCCTGCGGCAGATGGTAGGTGTACAGGTAAAGAT
AGTACTTGTGTACAAACGCAGCTCCTGTCAGCACCATGCTCAGTTCGCAG
CTGTAATTGGAGTTGTAGTGCCACTGGCCATTGGGATTTCCCAAATCCCA
AGCGTGGTAACGTCCTGGGAAGCCTACAACTCTATCGCGATGCTCCCGCC
AAACACGGAATCCGAAGAGAATCTCATCATGACGCAGATGGGCATCGTCG
TCGACAGAGAGAACAGCCTCGGTTTCAATGACATCAAAAGGCAGAAATCG
GTTGTTTAACGAATTCCTGGGAGCCCGAAGGACGGCAACTGGTACTCCAA
TATCCGGCCACCTTAGGTCATCCAATGGTGGCTTCGGTGAGTTCCAAACC
ACCACGACTTTGTGCAGATACGGCAGACCATACAGTCTGCCCAATGAATC
CATGAGGACTTGTTCTCTTTCGTAGGTTAACATAACAATGGTGAACTGCT
CCCCGGGGTAATTGCCACCCAGTGACTCGCCGAATTCTTTCCCAGCTCCT
CCCAATCCTTACCTATCGGACAAAAGCCTGTATGCGAGCCCATAAACTTG
GTTTCCGAAGGCAACGCAGGATCAAAGGGCAGCTGGGGGGTAAGGTAAAA
GGGA
BO05666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15110-PA | 2919 | botv-RA | 2077..2916 | 858..19 | 4150 | 99.7 | Minus |
| CG15110-PA | 2919 | botv-RA | 1980..2077 | 954..857 | 390 | 95.9 | Minus |
| CG8433-PA | 2154 | Ext2-RA | 1854..1898 | 304..260 | 150 | 93.3 | Minus |
| CG8433-PB | 2154 | Ext2-RB | 1854..1898 | 304..260 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 2081..3017 | 954..19 | 4570 | 99.3 | Minus |
| Ext2-RB | 2694 | CG8433-RB | 1916..1960 | 304..260 | 180 | 93.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19132179..19133115 | 954..19 | 4545 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:04:21 has no hits.
BO05666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:09 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-PA | 1981..2919 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:24 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15110-PA | 1981..2919 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:39 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 2082..3017 | 19..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:34:12 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 2082..3017 | 19..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:34:12 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19132180..19133115 | 19..953 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:39 Download gff for
BO05666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15019685..15020620 | 19..953 | 99 | | Minus |
BO05666.5prime Sequence
932 bp (820 high quality bases) assembled on 2005-12-02
> BO05666.5prime
GAAGTTATCAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAG
AGGCGTACCAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGT
GCCCCGAACTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGAC
ATCCTGGATGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGA
TGCTGCTGTTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAG
CAAGATGCCCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGC
CTACGAAGATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCG
AGGAGATGGTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTG
GAGTCCCGTCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAA
GATCGAGGAGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGC
GCCTCAAGATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTT
CAGCGGAATACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACAC
ACTGCCAAGAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCG
AAATGCACAACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTT
CCTGTTTATCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTA
CGATATCGATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAGGATACA
ATGCTCATATAGTTAAGGATCCCAAGCATGCCTGCATATATCTAGTTCTG
GTGGGAGAGGCTCTGCTTGAGCAGGATCTATTGCGAAATAATCGCTATGC
GGCTCAGGAGGCGGAGCATCAGCAGCCCTCCA
BO05666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15110-PA | 2919 | botv-RA | 1..914 | 17..930 | 4570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..1015 | 16..930 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19131113 | 365..930 | 2815 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 16..246 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 245..370 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:04:52 has no hits.
BO05666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:11 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-PA | 1..914 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:25 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15110-PA | 1..914 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:11:43 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 101..1015 | 16..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:07 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 101..1015 | 16..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:07 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19129689..19129917 | 16..244 | 100 | -> | Plus |
| 2R | 19130368..19130493 | 245..370 | 100 | -> | Plus |
| 2R | 19130554..19131113 | 371..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:11:43 Download gff for
BO05666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15017194..15017422 | 16..244 | 100 | -> | Plus |
| arm_2R | 15017873..15017998 | 245..370 | 100 | -> | Plus |
| arm_2R | 15018059..15018618 | 371..931 | 99 | | Plus |
BO05666.complete Sequence
2950 bp assembled on 2008-08-14
GenBank Submission: FJ630128
> BO05666.complete
GAAGTTATCAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAG
AGGCGTACCAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGT
GCCCCGAACTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGAC
ATCCTGGATGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGA
TGCTGCTGTTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAG
CAAGATGCCCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGC
CTACGAAGATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCG
AGGAGATGGTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTG
GAGTCCCGTCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAA
GATCGAGGAGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGC
GCCTCAAGATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTT
CAGCGGAATACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACAC
ACTGCCAAGAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCG
AAATGCACAACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTT
CCTGTTTATCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTA
CGATATCGATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAGGATACA
ATGCTCATATAGTTAAGGATCCCAAGCATGCCTGCATATATCTAGTTCTG
GTGGGAGAGGCTCTGCTTGAGCAGGATCTATTGCGAAATAATCGCTATGC
GGCTCAGGAGGCGGAGCATCAGCAGCCCTCGACGCCCACTCTAGAAAATG
ACTGCCCCGTGGACATGGAGAAGCTTTACAGTCTGCCATATTGGGGCGGC
GATGGTCGCAATCATGTGCTGCTCAACTTGGCGAGAAGAGATCTCACATC
ACATCGTACGAATCCTCTCTACAGGCAGAACACTATGCGAGCAATTGTGG
TGCAAAGTGCTTTTGAAAGAGAACAGTTCCGTCCAGGTTATGACCTAATT
GTGCCTCCTATTCTGGGTCCTCCTGGAGGAGATGTGTGGCAGGAGTGCGC
GGAAATGGTGCCCGCCCGAAGGAAATACCTGCTTACCTACCAAGGTGAAC
TGAGGCCCAAACAGAGTAGTTTGAACCCCTTAGATGCGTTTATTCTGGAG
CACCTGGCGGATATGGCCAAGGGCGCAACGCAAGATCAGTTCGTTCTGCA
GTTCCAGTGCGTCCCAGCTACGGAACAGCAGGAGGGTGATTCCCTGCCAG
ATTGGACGCTATGTGGTTCGGATTCATCGCGCCGCCAATTGCTTAAGGAC
TCTACGTTTTCTCTGATTTTACCCCCGTTGAATGGCAGAGTTTCGTCGAC
ACTAATGCTTGCTAGGATTTATGAAGCTCTCCGTTCGGGAGCAGTACCTG
TTATCCTTGGAGCAGATGAGTTGCGTTTGCCGTATGCTGAAACTGTAGAT
TGGAGAAGAACGGCACTACTGCTACCGAAAGCTCGGATCACAGAACTGCA
TTTCCTTCTGCGCGCGGTGCAGGATGCGGACTTATTGCTGCTGCGACGAC
AGGGGCGACTCATCTGGGAACGCTATTTGAGCTCTGTGCAGGCCACCGTG
GATACAGTGATTGCCAGTTTAAGGGATCGCCTTGGAATCCCGCCCAGACC
CGTGCCCTCGGTTATAGCGCAAAGTGTGTTCAACAGCACATTTATACCCC
TAAAATCCGATCCACCTGTTGGCTTGGATACGGAACCCGAAGAGTCGTTG
GGACCCATCGAACCACCCTATCCGAGTCCTGCTTTCCGGCGAAACTATAC
AATACTGCGTATGCAGGCGAAGGAAGCCTGGAATGATTGGCTGGATCCCT
TTTACCTTTACCCCCAGCTGCCCTTTGATCCTGCGTTGCCTTCGGAAGCC
AAGTTTATGGGCTCGCATACAGGCTTTCGTCCGATAGGTAAGGGATTGGG
AGGAGCTGGGAAGGAATTCGGCGAGTCACTGGGTGGCAATTACCCCCGGG
AGCAGTTCACCATTGTTATGTTAACCTACGAAAGAGAACAAGTCCTCATG
GATTCATTGGGCAGACTGTATGGTCTGCCGTATCTGCACAAAGTCGTGGT
GGTTTGGAACTCACCGAAGCCACCATTGGATGACCTAAGGTGGCCGGATA
TTGGAGTACCAGTTGCCGTCCTTCGGGCTCCCAGGAATTCGTTAAACAAC
CGATTTCTGCCTTTTGATGTCATTGAAACCGAGGCTGTTCTCTCTGTCGA
CGACGATGCCCATCTGCGTCATGATGAGATTCTCTTCGGATTCCGTGTTT
GGCGGGAGCATCGCGATAGAGTTGTAGGCTTCCCAGGACGTTACCACGCT
TGGGATTTGGGAAATCCCAATGGCCAGTGGCACTACAACTCCAATTACAG
CTGCGAACTGAGCATGGTGCTGACAGGAGCTGCGTTTGTACACAAGTACT
ATCTTTACCTGTACACCTACCATCTGCCGCAGGCGATAAGGGACAAGGTG
GATGAGTACATGAACTGTGAGGACATTGCCATGAATTTTCTCGTATCGCA
TATAACTAGAAAACCACCAGTCAAAGTCACCTCCAGGTGGACATTCCGCT
GCCCCGGCTGTCCTGTTTCACTCAGCGAGGATGACACTCACTTCCAGGAG
CGGCACAAGTGCATCAATTTCTTTAGCCGGGTGTTCGGCTATACGCCGCT
GCTGAACACCCAGTACCGAGCGGACTCCATTCTCTTCAAGACGCGCATCC
CGCACGACAAGCAAAAGTGCTTCAAGTACATCGCAAGCTTTCTAGACCAT
BO05666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 2919 | CG15110-PA | 1..2916 | 17..2932 | 14580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..3017 | 16..2932 | 14585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19133115 | 365..2932 | 12825 | 100 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 16..246 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 245..370 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:31:33 has no hits.
BO05666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:56 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 96..3012 | 16..2932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:56 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 102..3017 | 17..2934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:20 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 97..3012 | 17..2934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:59 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 102..3017 | 17..2934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:59 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19130554..19133115 | 371..2934 | 99 | | Plus |
| 2R | 19129690..19129917 | 17..244 | 100 | -> | Plus |
| 2R | 19130368..19130493 | 245..370 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:56 Download gff for
BO05666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15018059..15020620 | 371..2934 | 99 | | Plus |
| arm_2R | 15017195..15017422 | 17..244 | 100 | -> | Plus |
| arm_2R | 15017873..15017998 | 245..370 | 100 | -> | Plus |
BO05666.pep Sequence
Translation from 16 to 2950
> BO05666.pep
MPPAYDLGHSGEAYQPLDTGSGGGNEACAPNSSSAQIRHSMGFRTSWMRQ
FRRYKLPMVLLMLLFLVSCLAYRILSVEQDAPPLDLHRSSPLLDAYEDFS
AMRAGDLKMRIEEMVRIKSTVSVELRELESRRQKLQSDISQYNQKIEELK
QELLREQTELERLKISVEQAQVAQREAVQRNTPDLALPRSLLPNTLPRKS
NPITGGMAASCEMHNCFNHSRCSLTSGFPVYLYDPDEHSVQRKGYDIDGF
LKTTLKQTLGYNAHIVKDPKHACIYLVLVGEALLEQDLLRNNRYAAQEAE
HQQPSTPTLENDCPVDMEKLYSLPYWGGDGRNHVLLNLARRDLTSHRTNP
LYRQNTMRAIVVQSAFEREQFRPGYDLIVPPILGPPGGDVWQECAEMVPA
RRKYLLTYQGELRPKQSSLNPLDAFILEHLADMAKGATQDQFVLQFQCVP
ATEQQEGDSLPDWTLCGSDSSRRQLLKDSTFSLILPPLNGRVSSTLMLAR
IYEALRSGAVPVILGADELRLPYAETVDWRRTALLLPKARITELHFLLRA
VQDADLLLLRRQGRLIWERYLSSVQATVDTVIASLRDRLGIPPRPVPSVI
AQSVFNSTFIPLKSDPPVGLDTEPEESLGPIEPPYPSPAFRRNYTILRMQ
AKEAWNDWLDPFYLYPQLPFDPALPSEAKFMGSHTGFRPIGKGLGGAGKE
FGESLGGNYPREQFTIVMLTYEREQVLMDSLGRLYGLPYLHKVVVVWNSP
KPPLDDLRWPDIGVPVAVLRAPRNSLNNRFLPFDVIETEAVLSVDDDAHL
RHDEILFGFRVWREHRDRVVGFPGRYHAWDLGNPNGQWHYNSNYSCELSM
VLTGAAFVHKYYLYLYTYHLPQAIRDKVDEYMNCEDIAMNFLVSHITRKP
PVKVTSRWTFRCPGCPVSLSEDDTHFQERHKCINFFSRVFGYTPLLNTQY
RADSILFKTRIPHDKQKCFKYIASFLDH
BO05666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-PA | 972 | CG15110-PA | 1..972 | 1..972 | 5156 | 100 | Plus |
| Ext2-PB | 717 | CG8433-PB | 450..716 | 710..974 | 621 | 46.7 | Plus |
| ttv-PC | 299 | CG10117-PC | 9..290 | 707..967 | 474 | 37.1 | Plus |
| ttv-PB | 760 | CG10117-PB | 470..751 | 707..967 | 474 | 37.1 | Plus |
| ttv-PA | 760 | CG10117-PA | 470..751 | 707..967 | 474 | 37.1 | Plus |
| ttv-PB | 760 | CG10117-PB | 89..445 | 211..608 | 248 | 26.7 | Plus |
