Clone Sequence Records
BO05668.3prime Sequence
822 bp (775 high quality bases) assembled on 2005-12-02
> BO05668.3prime
ATGGTCTAGAAAGCTTGCCTCCTCGGCGGCGGCAGCTCCGTTTTCTATGA
TGGCATCAAACGAGAAGGGTTGGAAGGCGTAACCCTGGCCCTTGTAGAAC
TTGCTCTGGAACTCGACCCAATGGAGACGCAGGGTGTGCAGGAAGGCAGA
CAAGCCCTCCATGAGTACCAGAATGCCAACGGTGAGAATGGCCCAGAAGG
CAAACACGCAGGTCAATACAATGCCACCCACCGGCCCTTCCTGCTTCAAG
CCAATCGATAGGACCATGGTCCACAGCACCTCAGCCAACTGGGCATGGGC
CAAGGAAAGCGCCCACAATCGCAGATAGGAAGCGGTGTGGGATACCGAAC
CTAGGACGTACTCGATGGTGTGGATGCTCTGGTGAATGAAGATCTCAGAG
AGCTCCTCTTCCTCCTCATGGCCACCGCCACCACCGTGTGAGCCGCTATT
GGACACGCCGCCGGCTTCTGCATCTGAAGTTGCTCCTGCAATGGGCTGTA
CGTTCGCCTGCTTGCGGGCCTGCATGATGAGCAGCGGCTTGGCCAGCAAC
ATTACGGGAATGCAGCCGACGGCAACCAGGACGAATAACACCTGGATAAA
GTGCTGGCCCATGAACATATAGGTTTCACAGTTCTCCGGAGGTGGCTTGG
GCGTGTTAAAAAGCACCATGTCGATAAAGGTGATCAGGATTGAAGGCGCA
CAGGCTTCGGAGTAGGGCTTATCATTGGTGGCGGCAAACTTGATCCACTT
GATGAACATCAACAAAACCATGTAGAAGAAAAGCAGCAGCAGGAAGACCA
GCTGGGGAATGAACTCGTAGAG
BO05668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1709-PC | 2568 | Vha100-1-RC | 1762..2565 | 822..19 | 4020 | 100 | Minus |
| CG1709-PB | 2511 | Vha100-1-RB | 1705..2508 | 822..19 | 4020 | 100 | Minus |
| CG1709-PF | 2502 | Vha100-1-RF | 1696..2499 | 822..19 | 4020 | 100 | Minus |
| CG1709-PG | 2553 | Vha100-1-RG | 1747..2550 | 822..19 | 4020 | 100 | Minus |
| CG1709-PH | 2478 | Vha100-1-RH | 1672..2475 | 822..19 | 4020 | 100 | Minus |
| CG1709-PA | 2502 | Vha100-1-RA | 1696..2499 | 822..19 | 4020 | 100 | Minus |
| CG1709-PD | 2511 | Vha100-1-RD | 1705..2508 | 822..19 | 4020 | 100 | Minus |
| CG1709-PE | 2568 | Vha100-1-RE | 1762..2565 | 822..19 | 4020 | 100 | Minus |
| CG18617-PB | 2505 | Vha100-2-RB | 2359..2436 | 171..94 | 140 | 87.1 | Minus |
| CG18617-PA | 2505 | Vha100-2-RA | 2359..2436 | 171..94 | 140 | 87.1 | Minus |
| CG30329-PA | 2715 | Vha100-3-RA | 2602..2643 | 147..106 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RK | 2902 | CG1709-RK | 1807..2610 | 822..19 | 4020 | 100 | Minus |
| Vha100-1-RE | 3066 | CG1709-RE | 1966..2769 | 822..19 | 4020 | 100 | Minus |
| Vha100-1-RD | 3009 | CG1709-RD | 1909..2712 | 822..19 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29136482..29136702 | 719..499 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 29137076..29137286 | 501..291 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 29137352..29137524 | 290..118 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 29136315..29136417 | 822..720 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 29137579..29137683 | 123..19 | 510 | 99 | Minus |
| 3R | 32079331 | 3R | 18390664..18390771 | 64..171 | 285 | 84.3 | Plus |
| 2R | 25286936 | 2R | 18909062..18909162 | 96..196 | 250 | 83.2 | Plus |
| 2L | 23513712 | 2L | 11743624..11743709 | 396..311 | 205 | 82.6 | Minus |
Blast to na_te.dros performed 2015-02-11 15:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6865 | 755..801 | 127 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..2664 | 755..814 | 111 | 65 | Plus |
BO05668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:14 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1709-PC | 1762..2568 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:30 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1709-PF | 1696..2502 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:36:47 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RD | 1909..2715 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:44 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RD | 1909..2715 | 15..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:44 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29136315..29136417 | 720..822 | 100 | -> | Minus |
| 3R | 29136482..29136699 | 502..719 | 100 | -> | Minus |
| 3R | 29137076..29137286 | 291..501 | 100 | -> | Minus |
| 3R | 29137352..29137523 | 119..290 | 100 | -> | Minus |
| 3R | 29137584..29137686 | 15..118 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:36:47 Download gff for
BO05668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24962037..24962139 | 720..822 | 100 | -> | Minus |
| arm_3R | 24962204..24962421 | 502..719 | 100 | -> | Minus |
| arm_3R | 24962798..24963008 | 291..501 | 100 | -> | Minus |
| arm_3R | 24963074..24963245 | 119..290 | 100 | -> | Minus |
| arm_3R | 24963306..24963408 | 15..118 | 98 | | Minus |
BO05668.5prime Sequence
880 bp (790 high quality bases) assembled on 2005-12-02
> BO05668.5prime
GAAGTTATCAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGC
TGTGCCAGCTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAG
TTGGGAGAACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAA
CGCTTTCCAGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGG
AGCGCAAGCTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCC
ATGTTGGACACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGAT
CGACCTGGAGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGA
ATCAGAACGCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTG
AAGCATATTTTGCGCAAAACCCAAGTGTTCTTCGATGAGTCGGTGCCCAC
GGTGTACAAGTCGAGTGGCGCATACTCATCCAGCAAATATCGGCGCTATC
CGCAGATGGCCGACAACCAAAACGAGGACGAGCAGGCGCAGCTGCTGGGC
GAGGAGGGTGTCCGGGCCAGCCAACCGGGCCAGAATTTGAAGCTTGGCTT
CGTGGCTGGCGTCATCCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGT
TGTGGCGCGCCTGCAGGGGTAACGTCTTCCTGCGACAGGCGATGATTGAG
ACGCCGCTGGAGGATCCCACCAATGGCGACCAGGTGCACAAGTCCGTGTT
TATAATCTTCTTCCAGGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCT
GCGAGGGCTTCCGGGCCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGAT
CGGCGAGAGATGGCCATGGGTGTGATGACT
BO05668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1709-PC | 2568 | Vha100-1-RC | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG1709-PE | 2568 | Vha100-1-RE | 1..864 | 17..880 | 4320 | 100 | Plus |
| CG1709-PF | 2502 | Vha100-1-RF | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG1709-PA | 2502 | Vha100-1-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG1709-PB | 2511 | Vha100-1-RB | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG1709-PD | 2511 | Vha100-1-RD | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG1709-PG | 2553 | Vha100-1-RG | 1..423 | 17..439 | 2115 | 100 | Plus |
| CG1709-PF | 2502 | Vha100-1-RF | 422..798 | 504..880 | 1885 | 100 | Plus |
| CG1709-PA | 2502 | Vha100-1-RA | 422..798 | 504..880 | 1885 | 100 | Plus |
| CG1709-PH | 2478 | Vha100-1-RH | 398..774 | 504..880 | 1885 | 100 | Plus |
| CG1709-PH | 2478 | Vha100-1-RH | 94..399 | 134..439 | 1530 | 100 | Plus |
| CG1709-PB | 2511 | Vha100-1-RB | 523..807 | 596..880 | 1425 | 100 | Plus |
| CG1709-PD | 2511 | Vha100-1-RD | 523..807 | 596..880 | 1425 | 100 | Plus |
| CG1709-PG | 2553 | Vha100-1-RG | 566..849 | 597..880 | 1420 | 100 | Plus |
| CG18617-PB | 2505 | Vha100-2-RB | 148..192 | 164..208 | 150 | 93.3 | Plus |
| CG18617-PA | 2505 | Vha100-2-RA | 148..192 | 164..208 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RE | 3066 | CG1709-RE | 205..1068 | 17..880 | 4320 | 100 | Plus |
| Vha100-1-RC | 2959 | CG1709-RC | 103..966 | 17..880 | 4320 | 100 | Plus |
| Vha100-1-RJ | 2950 | CG1709-RJ | 103..525 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29132126..29132303 | 134..311 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29133270..29133429 | 438..597 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 29135262..29135417 | 725..880 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 309..439 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 597..725 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 17..133 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 247..149 | 315 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:44:31 has no hits.
BO05668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:15 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1709-PE | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:31 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1709-PC | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:34 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 103..966 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:12 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 103..966 | 17..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:12 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29132126..29132302 | 134..310 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 311..439 | 100 | -> | Plus |
| 3R | 29133272..29133429 | 440..597 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 598..724 | 100 | -> | Plus |
| 3R | 29135262..29135417 | 725..880 | 100 | | Plus |
| 3R | 29131709..29131825 | 17..133 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:34 Download gff for
BO05668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24957431..24957547 | 17..133 | 100 | -> | Plus |
| arm_3R | 24957848..24958024 | 134..310 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 311..439 | 100 | -> | Plus |
| arm_3R | 24958994..24959151 | 440..597 | 100 | -> | Plus |
| arm_3R | 24960771..24960897 | 598..724 | 100 | -> | Plus |
| arm_3R | 24960984..24961139 | 725..880 | 100 | | Plus |
BO05668.complete Sequence
2599 bp assembled on 2008-08-14
GenBank Submission: FJ630130
> BO05668.complete
GAAGTTATCAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGC
TGTGCCAGCTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAG
TTGGGAGAACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAA
CGCTTTCCAGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGG
AGCGCAAGCTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCC
ATGTTGGACACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGAT
CGACCTGGAGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGA
ATCAGAACGCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTG
AAGCATATTTTGCGCAAAACCCAAGTGTTCTTCGATGAGTCGGTGCCCAC
GGTGTACAAGTCGAGTGGCGCATACTCATCCAGCAAATATCGGCGCTATC
CGCAGATGGCCGACAACCAAAACGAGGACGAGCAGGCGCAGCTGCTGGGC
GAGGAGGGTGTCCGGGCCAGCCAACCGGGCCAGAATTTGAAGCTTGGCTT
CGTGGCTGGCGTCATCCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGT
TGTGGCGCGCCTGCAGGGGTAACGTCTTCCTGCGACAGGCGATGATTGAG
ACGCCGCTGGAGGATCCCACCAATGGCGACCAGGTGCACAAGTCCGTGTT
TATAATCTTCTTCCAGGGTGACCAGCTGAAGACGCGCGTCAAGAAGATCT
GCGAGGGCTTCCGGGCCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGAT
CGGCGAGAGATGGCCATGGGTGTGATGACTCGCATCGAAGATCTGAACAC
CGTGCTCGGCCAGACGCAGGACCATCGCCATCGTGTGCTGGTCGCTGCGG
CCAAGAATCTTAAGAACTGGTTCGTCAAGGTGCGCAAGATAAAGGCCATC
TACCATACGCTGAATCTCTTCAATCTGGACGTGACCCAGAAGTGTCTGAT
CGCCGAGTGCTGGGTACCGCTGCTGGACATTGAAACCATCCAGCTGGCCT
TGCGCCGCGGAACCGAAAGATCGGGATCGTCGGTGCCGCCAATTCTCAAC
CGGATGCAGACGTTCGAGAATCCACCGACCTACAATCGAACGAATAAGTT
TACCAAGGCCTTTCAGGCATTGATCGATGCCTATGGCGTGGCCAGCTATC
GGGAGATGAATCCGGCACCCTACACGATCATCACCTTCCCCTTCCTGTTC
GCCGTGATGTTTGGAGATTTGGGCCACGGAGCTATCATGGCGCTCTTTGG
TCTCTGGATGATTCGAAAGGAGAAGGGACTGGCGGCTCAGAAGACGGACA
ACGAGATCTGGAACATATTCTTTGGCGGACGGTACATCATCTTCCTCATG
GGCGTCTTCTCCATGTACACGGGTCTTATATACAACGATATATTCTCCAA
GTCGCTGAATATCTTTGGATCGCATTGGCACTTATCCTACAACAAGTCCA
CCGTGATGGAGAACAAGTTCCTGCAGTTGAGCCCGAAAGGCGACTACGAG
GGCGCTCCGTATCCGTTCGGCATGGATCCCATTTGGCAGGTGGCGGGAGC
CAATAAGATCATCTTCCACAACGCTTACAAGATGAAGATCTCGATCATTT
TCGGTGTTATTCACATGATCTTCGGTGTGGTGATGAGCTGGCACAATCAT
ACGTATTTCAGGAACAGGATCTCCCTGCTCTACGAGTTCATTCCCCAGCT
GGTCTTCCTGCTGCTGCTTTTCTTCTACATGGTTTTGTTGATGTTCATCA
AGTGGATCAAGTTTGCCGCCACCAATGATAAGCCCTACTCCGAAGCCTGT
GCGCCTTCAATCCTGATCACCTTTATCGACATGGTGCTTTTTAACACGCC
CAAGCCACCTCCGGAGAACTGTGAAACCTATATGTTCATGGGCCAGCACT
TTATCCAGGTGTTATTCGTCCTGGTTGCCGTCGGCTGCATTCCCGTAATG
TTGCTGGCCAAGCCGCTGCTCATCATGCAGGCCCGCAAGCAGGCGAACGT
ACAGCCCATTGCAGGAGCAACTTCAGATGCAGAAGCCGGCGGCGTGTCCA
ATAGCGGCTCACACGGTGGTGGCGGTGGCCATGAGGAGGAAGAGGAGCTC
TCTGAGATCTTCATTCACCAGAGCATCCACACCATCGAGTACGTCCTAGG
TTCGGTATCCCACACCGCTTCCTATCTGCGATTGTGGGCGCTTTCCTTGG
CCCATGCCCAGTTGGCTGAGGTGCTGTGGACCATGGTCCTATCGATTGGC
TTGAAGCAGGAAGGGCCGGTGGGTGGCATTGTATTGACCTGCGTGTTTGC
CTTCTGGGCCATTCTCACCGTTGGCATTCTGGTACTCATGGAGGGCTTGT
CTGCCTTCCTGCACACCCTGCGTCTCCATTGGGTCGAGTTCCAGAGCAAG
TTCTACAAGGGCCAGGGTTACGCCTTCCAACCCTTCTCGTTTGATGCCAT
CATAGAAAACGGAGCTGCCGCCGCCGAGGAGGCAAGCTTTCTAGACCAT
BO05668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RE | 2568 | CG1709-PE | 1..2565 | 17..2581 | 12825 | 100 | Plus |
| Vha100-1-RC | 2568 | CG1709-PC | 1..2565 | 17..2581 | 12825 | 100 | Plus |
| Vha100-1-RA | 2502 | CG1709-PA | 422..2499 | 504..2581 | 10390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RE | 3066 | CG1709-RE | 205..2769 | 17..2581 | 12825 | 100 | Plus |
| Vha100-1-RC | 2959 | CG1709-RC | 103..2667 | 17..2581 | 12825 | 100 | Plus |
| Vha100-1-RA | 3000 | CG1709-RA | 626..2703 | 504..2581 | 10390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29136417 | 725..1880 | 5780 | 100 | Plus |
| 3R | 32079331 | 3R | 29136482..29136702 | 1881..2101 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 29137076..29137286 | 2099..2309 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 134..311 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29137352..29137524 | 2310..2482 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 29133270..29133429 | 438..597 | 800 | 100 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 309..439 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 597..725 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 17..133 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 29137579..29137683 | 2477..2581 | 510 | 99 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 15..242 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 247..149 | 315 | 87.9 | Minus |
| 3R | 32079331 | 3R | 18390664..18390771 | 2536..2429 | 285 | 84.3 | Minus |
| 2L | 23513712 | 2L | 11742868..11742996 | 1403..1531 | 270 | 80.6 | Plus |
| 2R | 25286936 | 2R | 18909062..18909162 | 2504..2404 | 250 | 83.2 | Minus |
| 3R | 32079331 | 3R | 18392349..18392428 | 1065..986 | 235 | 86.2 | Minus |
| 3R | 32079331 | 3R | 18391886..18392011 | 1528..1403 | 225 | 78.6 | Minus |
| 3R | 32079331 | 3R | 18388331..18388441 | 1330..1220 | 225 | 80.2 | Minus |
| 2R | 25286936 | 2R | 18910296..18910374 | 1330..1252 | 215 | 84.8 | Minus |
| 3R | 32079331 | 3R | 18391691..18391807 | 1729..1610 | 205 | 80 | Minus |
| 2L | 23513712 | 2L | 11743624..11743709 | 2204..2289 | 205 | 82.6 | Plus |
| 3R | 32079331 | 3R | 18392085..18392193 | 1329..1221 | 185 | 78 | Minus |
Blast to na_te.dros performed 2014-11-27 20:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6865 | 1845..1799 | 127 | 74.5 | Minus |
BO05668.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:49 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RE | 205..2772 | 17..2585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:37 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 103..2667 | 17..2583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:40 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RE | 205..2769 | 17..2583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:31 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 103..2667 | 17..2583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:31 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29137352..29137523 | 2310..2481 | 100 | -> | Plus |
| 3R | 29137584..29137683 | 2482..2583 | 98 | | Plus |
| 3R | 29131709..29131825 | 17..133 | 100 | -> | Plus |
| 3R | 29132126..29132302 | 134..310 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 311..439 | 100 | -> | Plus |
| 3R | 29133272..29133429 | 440..597 | 100 | -> | Plus |
| 3R | 29135049..29135175 | 598..724 | 100 | -> | Plus |
| 3R | 29135262..29136417 | 725..1880 | 100 | -> | Plus |
| 3R | 29136482..29136699 | 1881..2098 | 100 | -> | Plus |
| 3R | 29137076..29137286 | 2099..2309 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:37 Download gff for
BO05668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24963306..24963405 | 2482..2583 | 98 | | Plus |
| arm_3R | 24957431..24957547 | 17..133 | 100 | -> | Plus |
| arm_3R | 24957848..24958024 | 134..310 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 311..439 | 100 | -> | Plus |
| arm_3R | 24958994..24959151 | 440..597 | 100 | -> | Plus |
| arm_3R | 24960771..24960897 | 598..724 | 100 | -> | Plus |
| arm_3R | 24960984..24962139 | 725..1880 | 100 | -> | Plus |
| arm_3R | 24962204..24962421 | 1881..2098 | 100 | -> | Plus |
| arm_3R | 24962798..24963008 | 2099..2309 | 100 | -> | Plus |
| arm_3R | 24963074..24963245 | 2310..2481 | 100 | -> | Plus |
BO05668.pep Sequence
Translation from 16 to 2599
> BO05668.pep
MGSLFRSEEMALCQLFLQSEAAYACVSELGELGLVQFRDLNPDVNAFQRK
FVNEVRRCDEMERKLRYLEKEIKKDGIPMLDTGESPEAPQPREMIDLEAT
FEKLENELREVNQNAEALKRNFLELTELKHILRKTQVFFDESVPTVYKSS
GAYSSSKYRRYPQMADNQNEDEQAQLLGEEGVRASQPGQNLKLGFVAGVI
LRERLPAFERMLWRACRGNVFLRQAMIETPLEDPTNGDQVHKSVFIIFFQ
GDQLKTRVKKICEGFRATLYPCPEAPADRREMAMGVMTRIEDLNTVLGQT
QDHRHRVLVAAAKNLKNWFVKVRKIKAIYHTLNLFNLDVTQKCLIAECWV
PLLDIETIQLALRRGTERSGSSVPPILNRMQTFENPPTYNRTNKFTKAFQ
ALIDAYGVASYREMNPAPYTIITFPFLFAVMFGDLGHGAIMALFGLWMIR
KEKGLAAQKTDNEIWNIFFGGRYIIFLMGVFSMYTGLIYNDIFSKSLNIF
GSHWHLSYNKSTVMENKFLQLSPKGDYEGAPYPFGMDPIWQVAGANKIIF
HNAYKMKISIIFGVIHMIFGVVMSWHNHTYFRNRISLLYEFIPQLVFLLL
LFFYMVLLMFIKWIKFAATNDKPYSEACAPSILITFIDMVLFNTPKPPPE
NCETYMFMGQHFIQVLFVLVAVGCIPVMLLAKPLLIMQARKQANVQPIAG
ATSDAEAGGVSNSGSHGGGGGHEEEEELSEIFIHQSIHTIEYVLGSVSHT
ASYLRLWALSLAHAQLAEVLWTMVLSIGLKQEGPVGGIVLTCVFAFWAIL
TVGILVLMEGLSAFLHTLRLHWVEFQSKFYKGQGYAFQPFSFDAIIENGA
AAAEEASFLDH
BO05668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-PE | 855 | CG1709-PE | 1..855 | 1..855 | 4466 | 100 | Plus |
| Vha100-1-PC | 855 | CG1709-PC | 1..855 | 1..855 | 4466 | 100 | Plus |
| Vha100-1-PA | 833 | CG1709-PA | 1..833 | 1..855 | 4319 | 97.4 | Plus |
| Vha100-1-PF | 833 | CG1709-PF | 1..833 | 1..855 | 4319 | 97.4 | Plus |
| Vha100-1-PK | 836 | CG1709-PK | 1..836 | 1..855 | 4178 | 94.6 | Plus |
