Clone Sequence Records
BO05671.3prime Sequence
935 bp (761 high quality bases) assembled on 2005-12-02
> BO05671.3prime
ATGGTCTAGAAAGCTTGCGATGTCGTTGTTTAGGGAGCTAGCCATCTCGA
GCTCCAGGCGAAGGCCAATGTTCACGCACATATACATGGACTCCGGATCC
TCGCGGATGAATACGTTTACCAGAGGCTTACCACCATCCATGGCCACAAC
CTTCAGGAGAGCTTCGGTGCGCCAAGGTATCAGACCACGCAGGCGATGAA
GCATATGACCTCCGATCTCTGGAACGTCGTGCAGGCGAACGGGTATCGCC
TGTGGCGGGAACGTAGCCAGAGCTCTGTTGTTTGCCTCCAGGCGGTAGAT
ATTAGAGATGTGCGCCTTACGCTGCCGTCCATCGTCCACGTAGTAGACAT
CGAAGGACTCTTCGTCCGGATTCAGTGGTCTGGTGACCAGTCGCCCGCGG
AACCACTGCTTGACGCCATCGACAGTCTCGTCGCACACGAATATATGGCG
GTCGTGGAGCAGATCCGAATAGCTCACTCGGTCCTGCTCGCCCAAATCAG
CCACAGTTTGCGCAATACTGCGCTCCACAAACTTAAGGTCATCATTGCGT
AGCAGCACCATTAGATCACCATCATCGTTGATGTGAGACACAAGAATGGG
CGTGGTCTTGCCGATCTTCTTTTCATCACTCAGCGATGGTGCCGGCGTGC
ACTTCGTTATTCTTTTCGCAACCAGATCGTTCAGATGAATGTCCTCAGCC
GTTGAGGTGTCGTACAGCGTGGCCACCAAGCACGCCCGACGCTTACCGTT
CTCCACCACACCCTGGGCAGATCCACCCAGTTCCAGGAACTGCTTCTCCG
TGGTGAGCACATGGGCCACAACCGTCTGGCCGTCCAGCTCCTTTGTTAAA
CCTGCAGAGCGTGCGGATGATCCTCGAACTTATCCAACGCATACATGCTG
AGGCACACGGCCTGGGCCGGGAGCGCCAAGAACTG
BO05671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-PA | 2640 | CG8920-RA | 1806..2637 | 850..19 | 4160 | 100 | Minus |
CG8920-PB | 3669 | CG8920-RB | 2064..2880 | 850..34 | 4085 | 100 | Minus |
CG8920-PC | 3669 | CG8920-RC | 2064..2880 | 850..34 | 4085 | 100 | Minus |
CG8920-PA | 2640 | CG8920-RA | 1720..1807 | 935..848 | 440 | 100 | Minus |
CG8920-PB | 3669 | CG8920-RB | 1978..2065 | 935..848 | 440 | 100 | Minus |
CG8920-PC | 3669 | CG8920-RC | 1978..2065 | 935..848 | 440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-RD | 3272 | CG8920-RD | 2154..3071 | 935..19 | 4565 | 99.9 | Minus |
CG8920-RA | 3079 | CG8920-RA | 1961..2878 | 935..19 | 4565 | 99.9 | Minus |
CG8920-RF | 3753 | CG8920-RF | 1902..2804 | 935..34 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20323445..20324224 | 935..157 | 3850 | 99.9 | Minus |
2R | 25286936 | 2R | 20324293..20324411 | 156..38 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:54:25 has no hits.
BO05671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:18 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-PA | 1720..2640 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:35 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-PA | 1720..2640 | 16..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:54 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 1961..2884 | 11..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:02 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 1961..2884 | 11..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:02 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20323445..20324224 | 157..935 | 99 | -> | Minus |
2R | 20324293..20324411 | 38..156 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:54 Download gff for
BO05671.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16210950..16211729 | 157..935 | 99 | -> | Minus |
arm_2R | 16211798..16211916 | 38..156 | 100 | -> | Minus |
BO05671.5prime Sequence
877 bp (821 high quality bases) assembled on 2005-12-02
> BO05671.5prime
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTA
BO05671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-PB | 3669 | CG8920-RB | 259..1118 | 17..876 | 4300 | 100 | Plus |
CG8920-PA | 2640 | CG8920-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
CG8920-PC | 3669 | CG8920-RC | 259..1118 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-RD | 3272 | CG8920-RD | 435..1294 | 17..876 | 4300 | 100 | Plus |
CG8920-RF | 3753 | CG8920-RF | 183..1042 | 17..876 | 4300 | 100 | Plus |
CG8920-RA | 3079 | CG8920-RA | 242..1101 | 17..876 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20321726..20322585 | 17..876 | 4300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:44:44 has no hits.
BO05671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:19 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:36 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-PC | 256..1118 | 13..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:36 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 239..1101 | 13..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:50 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 239..1101 | 13..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:50 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20321723..20322585 | 13..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:36 Download gff for
BO05671.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16209228..16210090 | 13..876 | 99 | | Plus |
BO05671.complete Sequence
2671 bp assembled on 2008-11-10
GenBank Submission: KX796937
> BO05671.complete
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAATTCGATCC
CTCACTTGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGCAAATGACT
TTGAGAAACCTGCATACAACATATTCAACAAGCTACGGAACCTACATTGT
TCAGTGCAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAGGAGTTCAC
CGATAAGGAGACAGCATACCAACGCACAGCACAGATCGCCATCCAGCGCA
TCATGCATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACATTTAGCGAT
GTGGAGTTTATCGATGGATTGTACAAGGAGCTGTTAAAGCACCCACATGG
CATATTGGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTTCCGGCAAC
ATCTGCCCAGTCATTGGTACGATTTGATCGTGAAGTCAAATAAAATTCGT
GTTGAGCACGGCATTGATCCAAGGATCATATTGTTTGCCAACGATCCTGG
TTCATCGGAGCCGGACCGCACCAGCATAACCACCCTGCCACAGATGGTGC
TGCCGTGGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACATGTTCATC
AGCTTCTGCGACTCCACCAAGATAGTGTGGGCTCGGATGATCGATCAGAT
CGCAAACTTTGAGGAACTGACGAAGCATATTGGACGCCAAATGGAGTCTC
CGCATTTCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAGTCTATTTA
GTGGAGATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCTGTGGATGA
GGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGATGTGGCAA
TGTTTCATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCTTGGCGCTC
CCGGCCCAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAGTTCGAGGA
TCATCCGCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGGCCAGACGG
TTGTGGCCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAACTGGGTGGA
TCTGCCCAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGCTTGGTGGC
CACGCTGTACGACACCTCAACGGCTGAGGACATTCATCTGAACGATCTGG
TTGCGAAAAGAATAACGAAGTGCACGCCGGCACCATCGCTGAGTGATGAA
AAGAAGATCGGCAAGACCACGCCCATTCTTGTGTCTCACATCAACGATGA
TGGTGATCTAATGGTGCTGCTACGCAATGATGACCTTAAGTTTGTGGAGC
GCAGTATTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACCGAGTGAGC
TATTCGGATCTGCTCCACGACCGCCATATATTCGTGTGCGACGAGACTGT
CGATGGCGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAGACCACTGA
ATCCGGACGAAGAGTCCTTCGATGTCTACTACGTGGACGATGGACGGCAG
CGTAAGGCGCACATCTCTAATATCTACCGCCTGGAGGCAAACAACAGAGC
TCTGGCTACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCACGACGTTC
CAGAGATCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGATACCTTGG
CGCACCGAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGTAAGCCTCT
GGTAAACGTATTCATCCGCGAGGATCCGGAGTCCATGTATATGTGCGTGA
ACATTGGCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCCTAAACAACGAC
ATCGCAAGCTTTCTAGACCAT
BO05671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-RD | 2898 | CG8920-PD | 259..2895 | 17..2653 | 13185 | 100 | Plus |
CG8920-RA | 2640 | CG8920-PA | 1..2637 | 17..2653 | 13185 | 100 | Plus |
CG8920-RF | 3411 | CG8920-PF | 1..2622 | 17..2638 | 13110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-RD | 3272 | CG8920-RD | 435..3071 | 17..2653 | 13185 | 100 | Plus |
CG8920-RA | 3079 | CG8920-RA | 242..2878 | 17..2653 | 13185 | 100 | Plus |
CG8920-RF | 3753 | CG8920-RF | 183..2804 | 17..2638 | 13110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20321726..20324224 | 17..2515 | 12495 | 100 | Plus |
2R | 25286936 | 2R | 20324293..20324411 | 2516..2634 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:29:31 has no hits.
BO05671.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:57 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 238..2883 | 13..2661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:37 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 242..2878 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:27 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 241..2877 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:50 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8920-RA | 242..2878 | 17..2655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:50 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20321726..20324224 | 17..2515 | 100 | -> | Plus |
2R | 20324293..20324411 | 2516..2634 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:37 Download gff for
BO05671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16211798..16211916 | 2516..2634 | 100 | -> | Plus |
arm_2R | 16209231..16211729 | 17..2515 | 100 | -> | Plus |
BO05671.pep Sequence
Translation from 16 to 2671
> BO05671.pep
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSLNNDIASFLDH
BO05671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8920-PD | 965 | CG8920-PD | 87..965 | 1..879 | 4654 | 100 | Plus |
CG8920-PA | 879 | CG8920-PA | 1..879 | 1..879 | 4654 | 100 | Plus |
CG8920-PF | 1136 | CG8920-PF | 1..876 | 1..876 | 4631 | 99.8 | Plus |
CG8920-PB | 1222 | CG8920-PB | 87..962 | 1..876 | 4631 | 99.8 | Plus |