Clone BO05671 Report

Search the DGRC for BO05671

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG8920-RA
Protein status:BO05671.pep: Imported from assembly
Sequenced Size:2671

Clone Sequence Records

BO05671.3prime Sequence

935 bp (761 high quality bases) assembled on 2005-12-02

> BO05671.3prime
ATGGTCTAGAAAGCTTGCGATGTCGTTGTTTAGGGAGCTAGCCATCTCGA
GCTCCAGGCGAAGGCCAATGTTCACGCACATATACATGGACTCCGGATCC
TCGCGGATGAATACGTTTACCAGAGGCTTACCACCATCCATGGCCACAAC
CTTCAGGAGAGCTTCGGTGCGCCAAGGTATCAGACCACGCAGGCGATGAA
GCATATGACCTCCGATCTCTGGAACGTCGTGCAGGCGAACGGGTATCGCC
TGTGGCGGGAACGTAGCCAGAGCTCTGTTGTTTGCCTCCAGGCGGTAGAT
ATTAGAGATGTGCGCCTTACGCTGCCGTCCATCGTCCACGTAGTAGACAT
CGAAGGACTCTTCGTCCGGATTCAGTGGTCTGGTGACCAGTCGCCCGCGG
AACCACTGCTTGACGCCATCGACAGTCTCGTCGCACACGAATATATGGCG
GTCGTGGAGCAGATCCGAATAGCTCACTCGGTCCTGCTCGCCCAAATCAG
CCACAGTTTGCGCAATACTGCGCTCCACAAACTTAAGGTCATCATTGCGT
AGCAGCACCATTAGATCACCATCATCGTTGATGTGAGACACAAGAATGGG
CGTGGTCTTGCCGATCTTCTTTTCATCACTCAGCGATGGTGCCGGCGTGC
ACTTCGTTATTCTTTTCGCAACCAGATCGTTCAGATGAATGTCCTCAGCC
GTTGAGGTGTCGTACAGCGTGGCCACCAAGCACGCCCGACGCTTACCGTT
CTCCACCACACCCTGGGCAGATCCACCCAGTTCCAGGAACTGCTTCTCCG
TGGTGAGCACATGGGCCACAACCGTCTGGCCGTCCAGCTCCTTTGTTAAA
CCTGCAGAGCGTGCGGATGATCCTCGAACTTATCCAACGCATACATGCTG
AGGCACACGGCCTGGGCCGGGAGCGCCAAGAACTG

BO05671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-PA 2640 CG8920-RA 1806..2637 850..19 4160 100 Minus
CG8920-PB 3669 CG8920-RB 2064..2880 850..34 4085 100 Minus
CG8920-PC 3669 CG8920-RC 2064..2880 850..34 4085 100 Minus
CG8920-PA 2640 CG8920-RA 1720..1807 935..848 440 100 Minus
CG8920-PB 3669 CG8920-RB 1978..2065 935..848 440 100 Minus
CG8920-PC 3669 CG8920-RC 1978..2065 935..848 440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-RD 3272 CG8920-RD 2154..3071 935..19 4565 99.9 Minus
CG8920-RA 3079 CG8920-RA 1961..2878 935..19 4565 99.9 Minus
CG8920-RF 3753 CG8920-RF 1902..2804 935..34 4490 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20323445..20324224 935..157 3850 99.9 Minus
2R 25286936 2R 20324293..20324411 156..38 595 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:54:25 has no hits.

BO05671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:18 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-PA 1720..2640 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:35 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-PA 1720..2640 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:54 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 1961..2884 11..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:02 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 1961..2884 11..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:02 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20323445..20324224 157..935 99 -> Minus
2R 20324293..20324411 38..156 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:54 Download gff for BO05671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16210950..16211729 157..935 99 -> Minus
arm_2R 16211798..16211916 38..156 100 -> Minus

BO05671.5prime Sequence

877 bp (821 high quality bases) assembled on 2005-12-02

> BO05671.5prime
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTA

BO05671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-PB 3669 CG8920-RB 259..1118 17..876 4300 100 Plus
CG8920-PA 2640 CG8920-RA 1..860 17..876 4300 100 Plus
CG8920-PC 3669 CG8920-RC 259..1118 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-RD 3272 CG8920-RD 435..1294 17..876 4300 100 Plus
CG8920-RF 3753 CG8920-RF 183..1042 17..876 4300 100 Plus
CG8920-RA 3079 CG8920-RA 242..1101 17..876 4300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20321726..20322585 17..876 4300 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:44:44 has no hits.

BO05671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:19 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-PA 1..860 17..876 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:36 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-PC 256..1118 13..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:50:36 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 239..1101 13..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:26:50 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 239..1101 13..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:26:50 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20321723..20322585 13..876 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:50:36 Download gff for BO05671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16209228..16210090 13..876 99   Plus

BO05671.complete Sequence

2671 bp assembled on 2008-11-10

GenBank Submission: KX796937

> BO05671.complete
GAAGTTATCAGTCGACATGGTACGTCAGCAGAAGACCAGCAAGTCCACAA
GCTTATCGAAGCCCACTCCAATTGCCCAGAAGCCCAAGCCAATTGCCCAG
AAGCACACTCACGGCAATAAGTACCACTACCAGCAACGGAATAAGCAGCC
GAATCATCAGCCGGATCAAGAAATAGGAAGAGCAGCTAAGTGTGAGAATC
AGGCTATAGCCGAGCATAAACAAGATCTAACGGGCATCATAACCCAAGAG
CTGTTTGAAAGTTTCAATAATATTCAAGGTCCGTTTTCGGAAAACCTGCA
GGTTTTCAACAAAAATCCAGAATATATCACAAGGCGAAAGAAAGAGCTTA
AGAAAGAAGACGATCTAGATCGTGGTCAAATAACGAAGGAAGTCGCTAGG
GAAAAACAGAAGGAAAAAGAAACCCGCGATCGGGCTGTGACGGAAACGAT
CTTCGTAACAATTGAGAACAAAAAGGCACCAGTCATGAATGGACATGGAC
CAAGGCACGTTAAAGTGGCTAACGGACAAGACAAACACAATGACGGCAAA
CCTCCGCTGCGTGCCATACTGGGCAACAGTGCTTCGCAGCGCCAGCAAGA
TACAAGCACCGTCTATCACAGCCCTGAATCCTCATTCAAGCGGCCACGTC
ATCCGCGAGTAATGTACCCTGGTCACCAGCGCACCACGGGCGTCTCTGTG
AATCACAGATTGAAAGTAACGCCGCAATCGGATGCACCCACGCCAGCGGT
AGCGCCCATCACGCCGCCAGCTTCGCCGGAATACGCTCAAACGACAACCG
CCGCTAAAGCGACGTACAAAGAAGATATCCACGGAGGTCAAGGTGAAACA
GGCAATGTCGTTACAAATCCAAAAGTTAAGGTGCCACTTAAATTCGATCC
CTCACTTGATCCCGTCTCCACGCTCAACTTCTATTGCGCGGCAAATGACT
TTGAGAAACCTGCATACAACATATTCAACAAGCTACGGAACCTACATTGT
TCAGTGCAAATCGCTGGCGATGTTTACAGTAGCTATCCGCAGGAGTTCAC
CGATAAGGAGACAGCATACCAACGCACAGCACAGATCGCCATCCAGCGCA
TCATGCATGCCCAGTCACACCAAAAGCTTTCTGCTTGCACATTTAGCGAT
GTGGAGTTTATCGATGGATTGTACAAGGAGCTGTTAAAGCACCCACATGG
CATATTGGGTCACAAGCTGGAGGATTGGTACGGCAGCACCTTCCGGCAAC
ATCTGCCCAGTCATTGGTACGATTTGATCGTGAAGTCAAATAAAATTCGT
GTTGAGCACGGCATTGATCCAAGGATCATATTGTTTGCCAACGATCCTGG
TTCATCGGAGCCGGACCGCACCAGCATAACCACCCTGCCACAGATGGTGC
TGCCGTGGCAGTCAAGCGAAGGAGGATCGCACGACTGGAACATGTTCATC
AGCTTCTGCGACTCCACCAAGATAGTGTGGGCTCGGATGATCGATCAGAT
CGCAAACTTTGAGGAACTGACGAAGCATATTGGACGCCAAATGGAGTCTC
CGCATTTCCGACAAAAGGTCTCTAAACCTTACGCTCAGGAAGTCTATTTA
GTGGAGATGCCCGATGGCTGGAATCGTGTTCGTGCAATTTCTGTGGATGA
GGAGACCCGCTCGGGCCGTTATCACTTTATCGACTTTGGCGATGTGGCAA
TGTTTCATTCAGAAGATCTCTTCCACTGTCCACCGCAGTTCTTGGCGCTC
CCGGCCCAGGCCGTGTGCCTCAGCATGTATGCGTTGGATAAGTTCGAGGA
TCATCCGCACGCTCTGCAGGTTTTAACAAAGGAGCTGGACGGCCAGACGG
TTGTGGCCCATGTGCTCACCACGGAGAAGCAGTTCCTGGAACTGGGTGGA
TCTGCCCAGGGTGTGGTGGAGAACGGTAAGCGTCGGGCGTGCTTGGTGGC
CACGCTGTACGACACCTCAACGGCTGAGGACATTCATCTGAACGATCTGG
TTGCGAAAAGAATAACGAAGTGCACGCCGGCACCATCGCTGAGTGATGAA
AAGAAGATCGGCAAGACCACGCCCATTCTTGTGTCTCACATCAACGATGA
TGGTGATCTAATGGTGCTGCTACGCAATGATGACCTTAAGTTTGTGGAGC
GCAGTATTGCGCAAACTGTGGCTGATTTGGGCGAGCAGGACCGAGTGAGC
TATTCGGATCTGCTCCACGACCGCCATATATTCGTGTGCGACGAGACTGT
CGATGGCGTCAAGCAGTGGTTCCGCGGGCGACTGGTCACCAGACCACTGA
ATCCGGACGAAGAGTCCTTCGATGTCTACTACGTGGACGATGGACGGCAG
CGTAAGGCGCACATCTCTAATATCTACCGCCTGGAGGCAAACAACAGAGC
TCTGGCTACGTTCCCGCCACAGGCGATACCCGTTCGCCTGCACGACGTTC
CAGAGATCGGAGGTCATATGCTTCATCGCCTGCGTGGTCTGATACCTTGG
CGCACCGAAGCTCTCCTGAAGGTTGTGGCCATGGATGGTGGTAAGCCTCT
GGTAAACGTATTCATCCGCGAGGATCCGGAGTCCATGTATATGTGCGTGA
ACATTGGCCTTCGCCTGGAGCTCGAGATGGCTAGCTCCCTAAACAACGAC
ATCGCAAGCTTTCTAGACCAT

BO05671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-RD 2898 CG8920-PD 259..2895 17..2653 13185 100 Plus
CG8920-RA 2640 CG8920-PA 1..2637 17..2653 13185 100 Plus
CG8920-RF 3411 CG8920-PF 1..2622 17..2638 13110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-RD 3272 CG8920-RD 435..3071 17..2653 13185 100 Plus
CG8920-RA 3079 CG8920-RA 242..2878 17..2653 13185 100 Plus
CG8920-RF 3753 CG8920-RF 183..2804 17..2638 13110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20321726..20324224 17..2515 12495 100 Plus
2R 25286936 2R 20324293..20324411 2516..2634 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:29:31 has no hits.

BO05671.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:57 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 238..2883 13..2661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:37 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 242..2878 17..2655 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:27 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 241..2877 17..2655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:50 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
CG8920-RA 242..2878 17..2655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:50 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20321726..20324224 17..2515 100 -> Plus
2R 20324293..20324411 2516..2634 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:37 Download gff for BO05671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16211798..16211916 2516..2634 100 -> Plus
arm_2R 16209231..16211729 17..2515 100 -> Plus

BO05671.pep Sequence

Translation from 16 to 2671

> BO05671.pep
MVRQQKTSKSTSLSKPTPIAQKPKPIAQKHTHGNKYHYQQRNKQPNHQPD
QEIGRAAKCENQAIAEHKQDLTGIITQELFESFNNIQGPFSENLQVFNKN
PEYITRRKKELKKEDDLDRGQITKEVAREKQKEKETRDRAVTETIFVTIE
NKKAPVMNGHGPRHVKVANGQDKHNDGKPPLRAILGNSASQRQQDTSTVY
HSPESSFKRPRHPRVMYPGHQRTTGVSVNHRLKVTPQSDAPTPAVAPITP
PASPEYAQTTTAAKATYKEDIHGGQGETGNVVTNPKVKVPLKFDPSLDPV
STLNFYCAANDFEKPAYNIFNKLRNLHCSVQIAGDVYSSYPQEFTDKETA
YQRTAQIAIQRIMHAQSHQKLSACTFSDVEFIDGLYKELLKHPHGILGHK
LEDWYGSTFRQHLPSHWYDLIVKSNKIRVEHGIDPRIILFANDPGSSEPD
RTSITTLPQMVLPWQSSEGGSHDWNMFISFCDSTKIVWARMIDQIANFEE
LTKHIGRQMESPHFRQKVSKPYAQEVYLVEMPDGWNRVRAISVDEETRSG
RYHFIDFGDVAMFHSEDLFHCPPQFLALPAQAVCLSMYALDKFEDHPHAL
QVLTKELDGQTVVAHVLTTEKQFLELGGSAQGVVENGKRRACLVATLYDT
STAEDIHLNDLVAKRITKCTPAPSLSDEKKIGKTTPILVSHINDDGDLMV
LLRNDDLKFVERSIAQTVADLGEQDRVSYSDLLHDRHIFVCDETVDGVKQ
WFRGRLVTRPLNPDEESFDVYYVDDGRQRKAHISNIYRLEANNRALATFP
PQAIPVRLHDVPEIGGHMLHRLRGLIPWRTEALLKVVAMDGGKPLVNVFI
REDPESMYMCVNIGLRLELEMASSLNNDIASFLDH

BO05671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8920-PD 965 CG8920-PD 87..965 1..879 4654 100 Plus
CG8920-PA 879 CG8920-PA 1..879 1..879 4654 100 Plus
CG8920-PF 1136 CG8920-PF 1..876 1..876 4631 99.8 Plus
CG8920-PB 1222 CG8920-PB 87..962 1..876 4631 99.8 Plus