Clone BO05672 Report

Search the DGRC for BO05672

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG9634-RA
Protein status:BO05672.pep: Imported from assembly
Sequenced Size:2671

Clone Sequence Records

BO05672.3prime Sequence

921 bp (785 high quality bases) assembled on 2005-12-02

> BO05672.3prime
ATGGTCTAGAAAGCTTGCGAGCAGGTTGGAGCAAGTCGCCTCCGCGGCGG
CACAGTTTGTGGAGCGGGGTAGAAACTGGATATGCTGCCATGTGGCGTTA
AAGAGATAACTCTCGGCCAGCTGGCTCTCTACGAGCGGCTTAATCCTGGC
GTAGTCCTTGTCAGCAATTGTGGTGCTGCAGTGCTGCTGCATGTAGGAGA
GCGTAAAGAGTTCGTTCTCGTTGAAAGACCTCAGACCGGGTATTCTCAAG
CGCCTGGTAAGTCCAAGGGCCTCATAGGTATTAGCCTGATCGATTCCCGA
TCCCTGGATGGCACTGCCCGCATCGATGGCATTCACGAAGTTACTCAACG
CCCTCGCTGCCGTTCGAGCTGCACTCAGCGTTACATGGAAGCTCTTCAGT
GCATTACTAGACAGCTCATTCAGCTCGTGGACCAACCTCGGTGGCTGTCC
TGCTGCCAGACAATTAACATCCGGCTGGGCATACCGAATCTCCGGTGCTG
CATCACTGATATCCGTGCTCTGGGTGTTGAACTGCAGCAGGAAGGTGGAG
AAGTTATCGATCAGGGCCTCCAATATATCAGTGCCTATGCGGGCAAAATT
CACAGCTACAGGATATCGGTAGTCATAGTAATTGGAGCTAATCAACACCT
TAGAGACCAGCAGCATATTCAGTTTATTGGAGTAGGCGATGGCCTGTGGA
TTGTCCCTTGTGTACATCTCGGAAACAATGACATCCAGTATGGCCAGCGG
TCCCAGCTTCTTTTCCATTTGCGATCGACGGAATGTCCAAATCCACTCCA
AATGCTCCACGAAAACACATTATTGAGTATCAGTTCATTGTAGTATTGCG
CAAGATAGGTGGGGTGCTGCAATACCTCATCGGGTATGCCAAACTGCAGG
CGCATCTCGTTCAATTTTCTT

BO05672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PA 2640 CG9634-RA 1841..2637 815..19 3985 100 Minus
CG9634-PA 2640 CG9634-RA 1742..1843 913..812 460 98 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 1881..2780 917..19 4430 99.6 Minus
CG9634-RB 3646 CG9634-RB 2246..3145 917..19 4430 99.6 Minus
CG9634-RA 3661 CG9634-RA 2261..3160 917..19 4430 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16727950..16728453 104..607 2520 100 Plus
X 23542271 X 16728774..16728961 731..917 845 97.9 Plus
X 23542271 X 16728538..16728660 608..730 615 100 Plus
X 23542271 X 16727805..16727889 19..103 425 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:54:36 has no hits.

BO05672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:19 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1735..2640 16..921 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:38 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1735..2640 16..921 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:02:41 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 2258..3160 19..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:15:42 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 2258..3160 19..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:15:42 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16727805..16727889 19..103 100 <- Plus
X 16727950..16728453 104..607 100 <- Plus
X 16728538..16728660 608..730 100 <- Plus
X 16728774..16728964 731..921 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:02:41 Download gff for BO05672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16622807..16622997 731..921 97   Plus
arm_X 16621838..16621922 19..103 100 <- Plus
arm_X 16621983..16622486 104..607 100 <- Plus
arm_X 16622571..16622693 608..730 100 <- Plus

BO05672.5prime Sequence

888 bp (840 high quality bases) assembled on 2005-12-02

> BO05672.5prime
GAAGTTATCAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAA
TCTGCGCCATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGC
CAGGACGAGATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGA
AACGGCTCCACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTT
CACATCTGACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAAC
GAGGTCGCTGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACC
CAACTCCACGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAG
GCCGACGATCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATC
CTGTACGTAACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCAT
CCTGCTGCTGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGC
TCTGCCTGGATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGG
GCCAACACCTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGG
CAATTTTGCCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCG
GCGAGTGGAACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTG
AATCGATTTATTGCAATGCTGCCAAATTCGCAAGAGGGTTCCGTGGAGTC
CACGGTGAGCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACA
AGAGCCAGTCGGATCTGCTCCTGAAACGGGCCATTAATGCAGTGTATGGC
TGGCANGCATTCCGCGACTCCAATCGACTGCAATCCTG

BO05672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PA 2640 CG9634-RA 1..872 17..888 4341 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 144..1015 17..888 4349 99.9 Plus
CG9634-RA 3661 CG9634-RA 524..1395 17..888 4349 99.9 Plus
CG9634-RB 3646 CG9634-RB 524..1380 17..888 4114 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16744845..16745201 686..330 1770 99.7 Minus
X 23542271 X 16745515..16745833 335..17 1595 100 Minus
X 23542271 X 16744614..16744773 845..686 800 100 Minus
X 23542271 X 16730004..16730046 888..846 204 97.7 Minus
Blast to na_te.dros performed on 2015-02-12 15:55:53 has no hits.

BO05672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:21 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1..872 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:39 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-PA 1..872 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:32 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..1395 17..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:14 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..1395 17..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:14 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16745515..16745833 17..335 100   Minus
X 16730004..16730046 846..888 97 <- Minus
X 16744614..16744772 687..845 100 <- Minus
X 16744845..16745195 336..686 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:32 Download gff for BO05672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16624037..16624079 846..888 97 <- Minus
arm_X 16638647..16638805 687..845 100 <- Minus
arm_X 16638878..16639228 336..686 100 <- Minus
arm_X 16639548..16639866 17..335 100   Minus

BO05672.complete Sequence

2671 bp assembled on 2008-08-14

GenBank Submission: FJ630131

> BO05672.complete
GAAGTTATCAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAA
TCTGCGCCATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGC
CAGGACGAGATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGA
AACGGCTCCACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTT
CACATCTGACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAAC
GAGGTCGCTGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACC
CAACTCCACGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAG
GCCGACGATCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATC
CTGTACGTAACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCAT
CCTGCTGCTGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGC
TCTGCCTGGATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGG
GCCAACACCTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGG
CAATTTTGCCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCG
GCGAGTGGAACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTG
AATCGATTTATTGCAATGCTGCCAAATTCGCAAGAGGGTTCCGTGGAGTC
CACGGTGAGCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACA
AGAGCCAGTCGGATCTGCTCCTGAAACGGGCCATTAATGCAGTGTATGGC
TGGCAGGCATTCCGCGACTCCAATCGACTGCAATCCTGGGAATACAAGCG
GGTTCTGGTCGTCCTACAGGCCAAACATGGCATATTTCCTTACTACCGCG
TCACCGTGGAGAACGGCTTTAGTAATCCCCACGACTATGTGATCACCCTG
GACGAGGGCGAACTTGGTCTGCCGGACAAGTACTTCTATGGCAACGATGC
TGACGAGGAAGTGGTTCGTGGCTATAAGCTGCTCCTCCGGGACTTTGCCA
TCAATATGGGAATCGTTTCACGGGAAGCGGATCTATTTGCCGACGATATT
TTCCACTATGAACGTCGCATTGTTAATCACATTGAGGACGCCAAAGCTGA
TGCAAATCGTCCGATAAATAAACTAATGCGTCTGGCCGATCTGAAGATAA
AAGCACCATCTTTGCCAATTCTGGAGTCCCTGCAGGCCATTTTCCCAAAA
ACCAAAATCACTGAAGACACCGAGGTTTTGGTACGAGATCCAGAGGTTAT
GCATGCCCTATCTGTTTTACTCTCCACTTCGGATAAGAAGCCTATTAACA
ACTTTATTGTATGGTCGCTGGCTCGTAAAATGTTGCCGCATTTGTCCAAG
GAGTATCGCACTTTGGCAGAGACCTTCGACCATGCGTTGTATGGACGCAC
AGCTAGCTATCCGAGGTGGCTCATATGCAGCAAAGTGGTGCGTGATTGGC
TGCCCTTTGCGGTGGATGCATTGCAGCAACAGCCACCCAGGCAGCAATTC
GAAACGATGACGTCCAAGAGCCGGGGCTTAAACAAGACCCAGGGCAACGA
GGAGCTCCTCAAGCTGATGTTCTTCAGTCTGCGGAATCAGTTGAAAGATT
CGCTGGAGCAAGCCAAATGGCTGGAGCCGGCGGCTAGGCAATTTATCCAA
AAGAAACTGAACGAGATGCGCCTGCAGTTTGGCATACCCGATGAGGTATT
GCAGCAACCCACCTATCTTGCGCAATACTACAATGAACTGATACTCAATA
ATGTGTTTTTCGTGGAGCATTTGGAGTGGATTTGGACATTCCGTCGATCG
CAAATGGAAAAGAAGCTGGGACCGCTGGCCATACTGGATGTCATTGTTTC
CGAGATGTACACAAGGGACAATCCACAGGCCATCGCCTACTCCAATAAAC
TGAATATGCTGCTGGTCTCTAAGGTGTTGATTAGCTCCAATTACTATGAC
TACCGATATCCTGTAGCTGTGAATTTTGCCCGCATAGGCACTGATATATT
GGAGGCCCTGATCGATAACTTCTCCACCTTCCTGCTGCAGTTCAACACCC
AGAGCACGGATATCAGTGATGCAGCACCGGAGATTCGGTATGCCCAGCCG
GATGTTAATTGTCTGGCAGCAGGACAGCCACCGAGGTTGGTCCACGAGCT
GAATGAGCTGTCTAGTAATGCACTGAAGAGCTTCCATGTAACGCTGAGTG
CAGCTCGAACGGCAGCGAGGGCGTTGAGTAACTTCGTGAATGCCATCGAT
GCGGGCAGTGCCATCCAGGGATCGGGAATCGATCAGGCTAATACCTATGA
GGCCCTTGGACTTACCAGGCGCTTGAGAATACCCGGTCTGAGGTCTTTCA
ACGAGAACGAACTCTTTACGCTCTCCTACATGCAGCAGCACTGCAGCACC
ACAATTGCTGACAAGGACTACGCCAGGATTAAGCCGCTCGTAGAGAGCCA
GCTGGCCGAGAGTTATCTCTTTAACGCCACATGGCAGCATATCCAGTTTC
TACCCCGCTCCACAAACTGTGCCGCCGCGGAGGCGACTTGCTCCAACCTG
CTCGCAAGCTTTCTAGACCAT

BO05672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 2640 CG9634-PC 1..2637 17..2653 13170 100 Plus
CG9634-RA 2640 CG9634-PA 1..2637 17..2653 13170 100 Plus
CG9634-RB 2625 CG9634-PB 1..2622 17..2653 12910 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-RC 3281 CG9634-RC 144..2780 17..2653 13170 100 Plus
CG9634-RA 3661 CG9634-RA 524..3160 17..2653 13170 100 Plus
CG9634-RB 3646 CG9634-RB 524..3145 17..2653 12910 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16728774..16729325 1941..1390 2745 99.8 Minus
X 23542271 X 16727950..16728453 2568..2065 2520 100 Minus
X 23542271 X 16744845..16745201 686..330 1770 99.7 Minus
X 23542271 X 16745515..16745833 335..17 1595 100 Minus
X 23542271 X 16729782..16730046 1110..846 1325 100 Minus
X 23542271 X 16744614..16744773 845..686 800 100 Minus
X 23542271 X 16729572..16729724 1261..1109 765 100 Minus
X 23542271 X 16729387..16729515 1390..1262 645 100 Minus
X 23542271 X 16728538..16728660 2064..1942 615 100 Minus
X 23542271 X 16727805..16727889 2653..2569 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:23:21 has no hits.

BO05672.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:58 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3160 17..2653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:14 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3160 17..2655 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:13 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3160 17..2655 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:37 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
CG9634-RA 524..3160 17..2655 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:37 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
X 16729783..16730046 846..1109 100 <- Minus
X 16727802..16727889 2569..2655 97 <- Minus
X 16745515..16745833 17..335 100   Minus
X 16727950..16728453 2065..2568 100 <- Minus
X 16728538..16728660 1942..2064 100 <- Minus
X 16728774..16729325 1390..1941 99 <- Minus
X 16729388..16729515 1262..1389 100 <- Minus
X 16729572..16729723 1110..1261 100 <- Minus
X 16744614..16744772 687..845 100 <- Minus
X 16744845..16745195 336..686 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:14 Download gff for BO05672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16639548..16639866 17..335 100   Minus
arm_X 16621835..16621922 2569..2655 97 <- Minus
arm_X 16621983..16622486 2065..2568 100 <- Minus
arm_X 16622571..16622693 1942..2064 100 <- Minus
arm_X 16622807..16623358 1390..1941 99 <- Minus
arm_X 16623421..16623548 1262..1389 100 <- Minus
arm_X 16623605..16623756 1110..1261 100 <- Minus
arm_X 16623816..16624079 846..1109 100 <- Minus
arm_X 16638647..16638805 687..845 100 <- Minus
arm_X 16638878..16639228 336..686 100 <- Minus

BO05672.pep Sequence

Translation from 16 to 2671

> BO05672.pep
MAINQGKYKPSICAIDEVDDRSFKLHNSQDEIGGKQQLQQIEGSETAPLT
TNQQKLHMDDGSHLTPKDLEAARQDALNEVAAGGAGGRTPAAITPNSTHP
SANGLRALLLPGRRSFDALMSLSRKRRILYVTTACLCALLLLIIILLLAF
WPEVPFYLRAPLCLDKECVESSRQLLLWANTSKSPCHETYEWACGNFASD
YANHEYFVIKRGEWNYETYNEYQELNELNRFIAMLPNSQEGSVESTVSSL
YRSCRETDVLDKSQSDLLLKRAINAVYGWQAFRDSNRLQSWEYKRVLVVL
QAKHGIFPYYRVTVENGFSNPHDYVITLDEGELGLPDKYFYGNDADEEVV
RGYKLLLRDFAINMGIVSREADLFADDIFHYERRIVNHIEDAKADANRPI
NKLMRLADLKIKAPSLPILESLQAIFPKTKITEDTEVLVRDPEVMHALSV
LLSTSDKKPINNFIVWSLARKMLPHLSKEYRTLAETFDHALYGRTASYPR
WLICSKVVRDWLPFAVDALQQQPPRQQFETMTSKSRGLNKTQGNEELLKL
MFFSLRNQLKDSLEQAKWLEPAARQFIQKKLNEMRLQFGIPDEVLQQPTY
LAQYYNELILNNVFFVEHLEWIWTFRRSQMEKKLGPLAILDVIVSEMYTR
DNPQAIAYSNKLNMLLVSKVLISSNYYDYRYPVAVNFARIGTDILEALID
NFSTFLLQFNTQSTDISDAAPEIRYAQPDVNCLAAGQPPRLVHELNELSS
NALKSFHVTLSAARTAARALSNFVNAIDAGSAIQGSGIDQANTYEALGLT
RRLRIPGLRSFNENELFTLSYMQQHCSTTIADKDYARIKPLVESQLAESY
LFNATWQHIQFLPRSTNCAAAEATCSNLLASFLDH

BO05672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9634-PC 879 CG9634-PC 1..879 1..879 4556 100 Plus
CG9634-PA 879 CG9634-PA 1..879 1..879 4556 100 Plus
CG9634-PB 874 CG9634-PB 1..874 1..879 4517 99.4 Plus
Nep4-PC 978 CG4058-PC 385..816 249..702 277 21.3 Plus
Nep4-PB 978 CG4058-PB 385..816 249..702 277 21.3 Plus