Clone BO05676 Report

Search the DGRC for BO05676

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG3909-RA
Protein status:BO05676.pep: full length peptide match
Sequenced Size:1027

Clone Sequence Records

BO05676.3prime Sequence

905 bp (779 high quality bases) assembled on 2005-12-02

> BO05676.3prime
ATGGTCTAGAAAGCTTGCAACAATGGCATTGGGCGGACAGTAGTATATGT
TCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGGCTA
TATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAGGCA
CTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGGAGC
TGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAAGAT
GCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATAAAG
CTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCGGAG
AAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGCACT
ACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGCTCC
ACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGTATT
TCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACACTG
TACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTTGCA
GGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTAGGT
GTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCCAGA
GAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAACAAC
TCCCAGGGCATGTCCTTTTAGTTTGTGGCGCAACTTTAGGGTGTTGTCCT
CCTGCAAGTCCCACACCTTTACCAAGTCATCCAGTCCGCCGGTGACCAAG
AAATCCTTCGGGCGGGCCTCCTTCTTATCGAAATCAAAGGGATTCTCCTC
GGGCT

BO05676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 107..993 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 184..1070 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044304..10044574 289..19 1355 100 Minus
3R 32079331 3R 10043766..10044004 716..478 1195 100 Minus
3R 32079331 3R 10043506..10043694 905..717 945 100 Minus
3R 32079331 3R 10044058..10044249 481..290 945 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 10:22:17 has no hits.

BO05676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:26 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 107..996 16..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:45 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 107..996 16..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:25 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 184..1070 19..905 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:43 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 184..1070 19..905 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:43 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10043506..10043694 717..905 100 -> Minus
3R 10043766..10044004 478..716 100 -> Minus
3R 10044062..10044249 290..477 100 -> Minus
3R 10044304..10044574 19..289 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:25 Download gff for BO05676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869228..5869416 717..905 100 -> Minus
arm_3R 5869488..5869726 478..716 100 -> Minus
arm_3R 5869784..5869971 290..477 100 -> Minus
arm_3R 5870026..5870296 19..289 100   Minus

BO05676.5prime Sequence

904 bp (839 high quality bases) assembled on 2005-12-02

> BO05676.5prime
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGC
ACAC

BO05676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 996 CG3909-RA 1..844 17..860 4220 100 Plus
CG3909-PA 996 CG3909-RA 842..887 859..904 230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..964 17..904 4415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 19..311 1465 100 Plus
3R 32079331 3R 10043766..10044004 312..550 1195 100 Plus
3R 32079331 3R 10044058..10044249 547..738 945 99.5 Plus
3R 32079331 3R 10044304..10044468 739..904 780 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 10:22:23 has no hits.

BO05676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:27 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 1..887 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:46 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-PA 1..887 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:28 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..964 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:58 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 78..964 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:58 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10044304..10044468 739..904 99   Plus
3R 10043397..10043694 13..311 98 -> Plus
3R 10043766..10044004 312..550 100 -> Plus
3R 10044062..10044249 551..738 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:28 Download gff for BO05676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869119..5869416 13..311 98 -> Plus
arm_3R 5869488..5869726 312..550 100 -> Plus
arm_3R 5869784..5869971 551..738 100 -> Plus
arm_3R 5870026..5870190 739..904 99   Plus

BO05676.complete Sequence

1027 bp (1027 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ630134

> BO05676.complete
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGCA
CACAGATCAGGTGTGGGGCGTCCGATATAGCCCCGGAAACGACAAGGTGG
CCTCTGCTTCTGAGGACAAGTCCCTGAACATATACTACTGTCCGCCCAAT
GCCATTGTTGCAAGCTTTCTAGACCAT

BO05676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 996 CG3909-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-RA 1102 CG3909-RA 78..1070 17..1009 4965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10043402..10043694 19..311 1465 100 Plus
3R 32079331 3R 10044304..10044574 739..1009 1355 100 Plus
3R 32079331 3R 10043766..10044004 312..550 1195 100 Plus
3R 32079331 3R 10044058..10044249 547..738 945 99.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:40 has no hits.

BO05676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:47 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 1..996 17..1012 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:15 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 90..1082 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:35 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 85..1070 24..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:47 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 90..1082 17..1009 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:32 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
CG3909-RA 85..1070 24..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:32 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10043407..10043694 24..311 100 -> Plus
3R 10043766..10044004 312..550 100 -> Plus
3R 10044062..10044249 551..738 100 -> Plus
3R 10044304..10044574 739..1011 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:35 Download gff for BO05676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5869129..5869416 24..311 100 -> Plus
arm_3R 5869488..5869726 312..550 100 -> Plus
arm_3R 5869784..5869971 551..738 100 -> Plus
arm_3R 5870026..5870296 739..1011 99   Plus

BO05676.pep Sequence

Translation from 16 to 1027

> BO05676.pep
MFSVLHKEENAHDSQLWACTWGRDTAASDPDDAVVEPEENPFDFDKKEAR
PKDFLVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTI
ASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVISGLNDGK
ISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVA
AGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTL
SGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVW
GVRYSPGNDKVASASEDKSLNIYYCPPNAIVASFLDH

BO05676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3909-PA 331 CG3909-PA 1..331 1..331 1755 100 Plus
wds-PB 361 CG17437-PB 85..357 53..323 334 29.2 Plus
wds-PA 361 CG17437-PA 85..357 53..323 334 29.2 Plus
wds-PB 361 CG17437-PB 64..327 77..337 321 28.7 Plus
wds-PA 361 CG17437-PA 64..327 77..337 321 28.7 Plus
ebi-PA 700 CG4063-PA 367..665 52..334 282 25.8 Plus
Poc1-PA 391 CG10191-PA 70..345 51..322 274 28.4 Plus
ebi-PA 700 CG4063-PA 425..692 55..320 234 25.8 Plus