Clone Sequence Records
BO05676.3prime Sequence
905 bp (779 high quality bases) assembled on 2005-12-02
> BO05676.3prime
ATGGTCTAGAAAGCTTGCAACAATGGCATTGGGCGGACAGTAGTATATGT
TCAGGGACTTGTCCTCAGAAGCAGAGGCCACCTTGTCGTTTCCGGGGCTA
TATCGGACGCCCCACACCTGATCTGTGTGCTCGGCGAACGTGTGCAGGCA
CTTGCGTTCCGAGGTGTCCCATATTTTCACGCTGTTATCACTGGAGGAGC
TGGCAAAGTGTTTGCCGTCCTCGGAGAATGCCACGCACAGCACCCAAGAT
GCGTGCCCAGATAGGGTGCCCACAACGTCGGAGTGGGTTACATCATAAAG
CTTCATGTGACCATCATCTGAGGCAGTGAGCAGCAGCTGCGAGTTCGGAG
AAAAGCAAAGGCTACGCACTGGCATCGCGTGTCCTTCCAATGTTTGCACT
ACCTTGCCCGCGGCCACATCGAAAATGGTAATGATACCATCGATGGCTCC
ACTGGCAATGTACTTGCCATCGGGACTGTAGGCAATGCTAAGCGTGTATT
TCCCATTTTGGGCATCCAATGTCTGCTCTGCCTTTCCGGTTTCCACACTG
TACATGGAGATTTTGCCGTCGTTCAGTCCGGATATCACATATTTGTTGCA
GGGTGAAAATTGCACCGTCCAGAGATCAACAGGCCCAAAGCTAAGTAGGT
GTTTCTTGTCGCCCGAACGGGCATCCCACAAACACATGGTGGAGTCCAGA
GAACTACTGGCAATGGTCTGTCCATCGGAACTGACGGCCACAGAAACAAC
TCCCAGGGCATGTCCTTTTAGTTTGTGGCGCAACTTTAGGGTGTTGTCCT
CCTGCAAGTCCCACACCTTTACCAAGTCATCCAGTCCGCCGGTGACCAAG
AAATCCTTCGGGCGGGCCTCCTTCTTATCGAAATCAAAGGGATTCTCCTC
GGGCT
BO05676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 107..993 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 184..1070 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044304..10044574 | 289..19 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 10043766..10044004 | 716..478 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 10043506..10043694 | 905..717 | 945 | 100 | Minus |
3R | 32079331 | 3R | 10044058..10044249 | 481..290 | 945 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:22:17 has no hits.
BO05676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:26 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 107..996 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:45 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 107..996 | 16..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:25 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 184..1070 | 19..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:43 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 184..1070 | 19..905 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:43 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10043506..10043694 | 717..905 | 100 | -> | Minus |
3R | 10043766..10044004 | 478..716 | 100 | -> | Minus |
3R | 10044062..10044249 | 290..477 | 100 | -> | Minus |
3R | 10044304..10044574 | 19..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:25 Download gff for
BO05676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869228..5869416 | 717..905 | 100 | -> | Minus |
arm_3R | 5869488..5869726 | 478..716 | 100 | -> | Minus |
arm_3R | 5869784..5869971 | 290..477 | 100 | -> | Minus |
arm_3R | 5870026..5870296 | 19..289 | 100 | | Minus |
BO05676.5prime Sequence
904 bp (839 high quality bases) assembled on 2005-12-02
> BO05676.5prime
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGC
ACAC
BO05676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 996 | CG3909-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
CG3909-PA | 996 | CG3909-RA | 842..887 | 859..904 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 78..964 | 17..904 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10043402..10043694 | 19..311 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 10043766..10044004 | 312..550 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 10044058..10044249 | 547..738 | 945 | 99.5 | Plus |
3R | 32079331 | 3R | 10044304..10044468 | 739..904 | 780 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:23 has no hits.
BO05676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:27 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 1..887 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:46 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-PA | 1..887 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:28 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..964 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:58 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 78..964 | 17..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:58 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044304..10044468 | 739..904 | 99 | | Plus |
3R | 10043397..10043694 | 13..311 | 98 | -> | Plus |
3R | 10043766..10044004 | 312..550 | 100 | -> | Plus |
3R | 10044062..10044249 | 551..738 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:28 Download gff for
BO05676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869119..5869416 | 13..311 | 98 | -> | Plus |
arm_3R | 5869488..5869726 | 312..550 | 100 | -> | Plus |
arm_3R | 5869784..5869971 | 551..738 | 100 | -> | Plus |
arm_3R | 5870026..5870190 | 739..904 | 99 | | Plus |
BO05676.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ630134
> BO05676.complete
GAAGTTATCAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGC
ACGACAGTCAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCA
GATCCGGATGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGA
TAAGAAGGAGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATG
ACTTGGTAAAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGC
CACAAACTAAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTC
CGATGGACAGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGT
GGGATGCCCGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTT
GATCTCTGGACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGG
ACTGAACGACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAG
AGCAGACATTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTAC
AGTCCCGATGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTAC
CATTTTCGATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACG
CGATGCCAGTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTC
ACTGCCTCAGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGA
CGTTGTGGGCACCCTATCTGGGCACGCATCTTGGGTGCTGTGCGTGGCAT
TCTCCGAGGACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTG
AAAATATGGGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGCA
CACAGATCAGGTGTGGGGCGTCCGATATAGCCCCGGAAACGACAAGGTGG
CCTCTGCTTCTGAGGACAAGTCCCTGAACATATACTACTGTCCGCCCAAT
GCCATTGTTGCAAGCTTTCTAGACCAT
BO05676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 996 | CG3909-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-RA | 1102 | CG3909-RA | 78..1070 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10043402..10043694 | 19..311 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 10044304..10044574 | 739..1009 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 10043766..10044004 | 312..550 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 10044058..10044249 | 547..738 | 945 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:40 has no hits.
BO05676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:29:47 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 1..996 | 17..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:56:15 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 90..1082 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:35 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 85..1070 | 24..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:29:47 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 90..1082 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:32 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3909-RA | 85..1070 | 24..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:32 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10043407..10043694 | 24..311 | 100 | -> | Plus |
3R | 10043766..10044004 | 312..550 | 100 | -> | Plus |
3R | 10044062..10044249 | 551..738 | 100 | -> | Plus |
3R | 10044304..10044574 | 739..1011 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:35 Download gff for
BO05676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5869129..5869416 | 24..311 | 100 | -> | Plus |
arm_3R | 5869488..5869726 | 312..550 | 100 | -> | Plus |
arm_3R | 5869784..5869971 | 551..738 | 100 | -> | Plus |
arm_3R | 5870026..5870296 | 739..1011 | 99 | | Plus |
BO05676.pep Sequence
Translation from 16 to 1027
> BO05676.pep
MFSVLHKEENAHDSQLWACTWGRDTAASDPDDAVVEPEENPFDFDKKEAR
PKDFLVTGGLDDLVKVWDLQEDNTLKLRHKLKGHALGVVSVAVSSDGQTI
ASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVISGLNDGK
ISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVA
AGKVVQTLEGHAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSDVVGTL
SGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVW
GVRYSPGNDKVASASEDKSLNIYYCPPNAIVASFLDH
BO05676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3909-PA | 331 | CG3909-PA | 1..331 | 1..331 | 1755 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 85..357 | 53..323 | 334 | 29.2 | Plus |
wds-PA | 361 | CG17437-PA | 85..357 | 53..323 | 334 | 29.2 | Plus |
wds-PB | 361 | CG17437-PB | 64..327 | 77..337 | 321 | 28.7 | Plus |
wds-PA | 361 | CG17437-PA | 64..327 | 77..337 | 321 | 28.7 | Plus |
ebi-PA | 700 | CG4063-PA | 367..665 | 52..334 | 282 | 25.8 | Plus |
Poc1-PA | 391 | CG10191-PA | 70..345 | 51..322 | 274 | 28.4 | Plus |
ebi-PA | 700 | CG4063-PA | 425..692 | 55..320 | 234 | 25.8 | Plus |