Clone BO05677 Report

Search the DGRC for BO05677

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:56
Well:77
Vector:pDNR-Dual
Associated Gene/Transcriptfor-RC
Protein status:BO05677.pep: Imported from assembly
Sequenced Size:2716

Clone Sequence Records

BO05677.3prime Sequence

833 bp (747 high quality bases) assembled on 2005-12-02

> BO05677.3prime
ATGGTCTAGAAAGCTTGCGAAGTCCTTGTCCCATCCAGTGACATCATCTG
GCGGCGGACCCTCAGGATCGGGAGGATAGTCATCAAAGTTTGTTGTATCC
ACAACGCTTTTCACGGCGGGCTTAATGGGCGGTTCCAGTGTGCAGTTCTG
CAGGCCCCACCAATAGAAGCCATCGAACCATTTGTGCTTTTGGATCTCGC
TGATTCCCCCACGCTGGTAGCCCAAACGCTCGGCTGGATTGTCGCGACAG
AGCTTCTTGATCAGGTTGCTGGCATTGCGGGTGATATTCCTTGGGAATTC
GATGGCGTCGATGCCCTTAAGTATAATGTTGTAGGTGCGCATGGGATCCG
AGCCCGTGAATGGAGGGGTACCAGTAAGTAACTCGAACATGAGCACTCCC
AGCGACCAGTAATCCGCACTGATGTCGTGGCCCCGGTTGAGAATCACCTC
GGGAGCCACGTACTCTGGAGTGCCGCAGAAAGTCCAGGTCTTCCTGCCCG
TCTGCAGCTTCTTGGCAAAGCCAAAGTCCACCAGCTTCACATATCCTCGT
TCATTGAGCAGCAGGTTCTCCGGCTTAAGATCGCGGTAGATGATGTTACG
CGAGTGCAAGTAATCAAAGGCCTCCACCACACATGCCGTGTAGAAGCGGG
TGGTGCTGTCGTCGAAGTTGCCCTTGTCCCGTAGAATCGTCCAGAGCTCT
CCGCCCAGGCAACTCTCCATCAGCATGTACAGGTACTTCTTGTCCTTGAA
GGTCTTGAACAGCTTCACGATGAACTGGCAATTGGCCTCGCCCATGATCT
CCTTCTCGGACATGATGTGTTGCTGCTGACGCG

BO05677.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10033-PE 2805 for-RE 1988..2802 833..19 4075 100 Minus
CG10033-PC 2685 for-RC 1868..2682 833..19 4075 100 Minus
CG10033-PJ 2805 for-RJ 1988..2802 833..19 4075 100 Minus
CG10033-PH 3267 for-RH 2450..3264 833..19 4075 100 Minus
CG10033-PD 2685 for-RD 1868..2682 833..19 4075 100 Minus
CG10033-PG 2685 for-RG 1868..2682 833..19 4075 100 Minus
CG10033-PF 2685 for-RF 1868..2682 833..19 4075 100 Minus
CG10033-PI 3267 for-RI 2450..3264 833..19 4075 100 Minus
CG10033-PA 3267 for-RA 2450..3264 833..19 4075 100 Minus
CG10033-PB 2229 for-RB 1412..2226 833..19 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 2245..3059 833..19 4075 100 Minus
for-RA 4595 CG10033-RA 3074..3888 833..19 4075 100 Minus
for-RI 4581 CG10033-RI 3060..3874 833..19 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3623260..3623723 370..833 2320 100 Plus
2L 23513712 2L 3623006..3623196 182..372 955 100 Plus
2L 23513712 2L 3622781..3622949 19..187 830 99.4 Plus
2L 23513712 2L 786790..787109 425..744 340 73.8 Plus
Blast to na_te.dros performed on 2015-02-11 04:54:30 has no hits.

BO05677.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:28 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
for-PG 1868..2685 16..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:48 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10033-PB 1412..2229 16..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:15:55 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
for-RI 3060..3874 19..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:20 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
for-RI 3060..3874 19..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:20 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3622785..3622943 23..181 100 <- Plus
2L 3623006..3623195 182..371 100 <- Plus
2L 3623262..3623723 372..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:15:55 Download gff for BO05677.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3622785..3622943 23..181 100 <- Plus
arm_2L 3623006..3623195 182..371 100 <- Plus
arm_2L 3623262..3623723 372..833 100   Plus

BO05677.5prime Sequence

866 bp (782 high quality bases) assembled on 2005-12-02

> BO05677.5prime
GAAGTTATCAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCG
ATGCGAGTCTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAG
GCCAATTGGCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGG
CACCAAATTGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCG
AGGGCATCTCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGG
CAGCTGGAGCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGA
ACTCAGCGGCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGA
TGCATAACGTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTG
GAAGATGCTTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCC
TGCAGTTAACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCA
GACCCCGGCAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAA
ACCATGTCGCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAAT
CAAGGAAAATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGG
CTGCAGAGGATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGA
CTGATGGCTCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGT
ATCGAAACCCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGG
TTAGGATGCCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAGGTCT
AGGGATTCCACCGCCT

BO05677.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10033-PE 2805 for-RE 1..850 17..866 4250 100 Plus
CG10033-PC 2685 for-RC 1..850 17..866 4250 100 Plus
CG10033-PJ 2805 for-RJ 1..850 17..866 4250 100 Plus
CG10033-PD 2685 for-RD 1..850 17..866 4250 100 Plus
CG10033-PG 2685 for-RG 1..850 17..866 4250 100 Plus
CG10033-PF 2685 for-RF 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 378..1227 17..866 4250 100 Plus
for-RG 3826 CG10033-RG 438..1287 17..866 4250 100 Plus
for-RD 4218 CG10033-RD 830..1679 17..866 4250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3626589..3627438 866..17 4250 100 Minus
Blast to na_te.dros performed 2015-02-13 15:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6864 242..393 133 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2521 319..405 131 62.5 Plus
roo 9092 roo DM_ROO 9092bp 1060..1098 317..354 111 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6843 318..405 109 59.6 Plus

BO05677.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:28:29 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
for-PG 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:52:49 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10033-PF 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:04:39 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RG 429..1287 8..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:00 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
for-RD 821..1679 8..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:00 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3626589..3627436 19..866 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:04:39 Download gff for BO05677.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3626589..3627436 19..866 100 <- Minus

BO05677.complete Sequence

2716 bp assembled on 2008-11-10

GenBank Submission: KX794330

> BO05677.complete
GAAGTTATCAGTCGACATGAAAATCAAACATTATCCGGGCAAAGCCGTCG
ATGCGAGTCTCTCGCTGGAGGGCAGCAGTGCCATGGGTGCCCTGTACGAG
GCCAATTGGCTGAGGGCTGCGAATCAGCCCGCCGCTCCAGCCACAACGGG
CACCAAATTGAGCAGGCAGAGCAGCTCCGCCGGCAGCAGTTTCCTCATCG
AGGGCATCTCCGCCCTGAGCAAGTACCAAATGACCCTGGAGAATATCCGG
CAGCTGGAGCTGCAGTCGCGTGACAAACGCATAGCGAGCACGATTAAGGA
ACTCAGCGGCTATAGGCCATCGGCACTGCAGCATCATCAGCAGCAGCAGA
TGCATAACGTTTGGGTGGCCGAGGATCAGGATCAGGAACACGAAGAACTG
GAAGATGCTTCGGAGGGAAAGGAGAAGTTGGCTAGTATCCAGGAACCCCC
TGCAGTTAACCACTATGTCCTGGACCCGACGGAGAGACCAAGGGTTCCCA
GACCCCGGCAACAGTTCTCCGTGAAACCGCCTTCCTTGCGTCGCTCCCAA
ACCATGTCGCAACCGCCCAGTTATGCCACCTTGAGATCGCCCCCGAAAAT
CAAGGAAAATCTTAGCAAAAGTTCCTCCGCCTACTCCACATTCTCCTCGG
CTGCAGAGGATTCCCAGGATCAAGTAGTGATCTGCCAACAGCCACAGAGA
CTGATGGCTCCGCCACCCAGAGAACCGCCTCCGGAGCCACCCAAAAGGGT
ATCGAAACCCCTGAGCAGATCGCAAACTTCGGTTCAGCGGTACGCCACGG
TTAGGATGCCCAACCAGACCACTTCGTTCAGCAGAAGTGTGGTCAGGTCT
AGGGATTCCACCGCCTCCCAGAGACGTCTCAGTTTGGAGCAGGCCATCGA
GGGACTCAAACTGGAGGGGGAGAAGGCTGTTCGTCAGAAGAGTCCACAAA
TCTCACCAGCTGCCAGCAGTAATGGCAGCTCCAAGGATCTCAACGGGGAG
GGTTTCTGTATCCCACGACCGCGCCTCATCGTTCCAGTGCACACATATGC
CCGTCGACGCAGGACGGGAAATCTCAAGGAGCAATCCAGCGGTGGGCAGG
AGGAGGAAGCAGAGAAGGATGGACGCGTGGAGGTTTCCCGCGAGGGCAAG
TACCTCTCCACATTGTCGGGAGCGAAGGTCCTTGGCGAATTGGCGATCCT
GTACAACTGCCAGCGGACGGCGACCATCACCGCGATCACCGAGTGCAACC
TGTGGGCCATCGAGCGCCAGTGCTTTCAGACCATCATGATGCGAACGGGC
CTGATCCGGCAGGCGGAGTACAGCGATTTCCTCAAGAGTGTGCCCATCTT
CAAAGACCTGGCGGAAGACACGCTCATCAAAATCTCCGATGTTTTGGAGG
AGACGCACTACCAGCGTGGCGACTACATAGTGCGCCAAGGCGCCCGAGGC
GATACCTTCTTCATCATATCCAAGGGAAAAGTGCGAGTGACGATCAAGCA
GCAGGACACGCAGGAGGAGAAGTTCATTCGCATGCTGGGCAAAGGGGATT
TCTTTGGAGAGAAGGCTCTCCAGGGCGATGATCTGCGCACGGCGAATATT
ATTTGCGAGTCCGCCGATGGCGTCAGTTGTCTGGTCATCGATCGCGAGAC
CTTCAATCAGCTAATTTCCAATCTAGACGAGATCAAGCATCGCTACGACG
ACGAGGGCGCCATGGAACGCAGAAAGATCAACGAGGAATTCCGGGACATT
AACCTCACAGATCTGCGCGTCATCGCAACCCTTGGAGTTGGAGGCTTCGG
TCGCGTAGAGCTGGTCCAAACTAATGGAGATAGCTCCAGGTCCTTCGCGC
TCAAGCAGATGAAAAAGTCACAGATTGTGGAGACGCGTCAGCAGCAACAC
ATCATGTCCGAGAAGGAGATCATGGGCGAGGCCAATTGCCAGTTCATCGT
GAAGCTGTTCAAGACCTTCAAGGACAAGAAGTACCTGTACATGCTGATGG
AGAGTTGCCTGGGCGGAGAGCTCTGGACGATTCTACGGGACAAGGGCAAC
TTCGACGACAGCACCACCCGCTTCTACACGGCATGTGTGGTGGAGGCCTT
TGATTACTTGCACTCGCGTAACATCATCTACCGCGATCTTAAGCCGGAGA
ACCTGCTGCTCAATGAACGAGGATATGTGAAGCTGGTGGACTTTGGCTTT
GCCAAGAAGCTGCAGACGGGCAGGAAGACCTGGACTTTCTGCGGCACTCC
AGAGTACGTGGCTCCCGAGGTGATTCTCAACCGGGGCCACGACATCAGTG
CGGATTACTGGTCGCTGGGAGTGCTCATGTTCGAGTTACTTACTGGTACC
CCTCCATTCACGGGCTCGGATCCCATGCGCACCTACAACATTATACTTAA
GGGCATCGACGCCATCGAATTCCCAAGGAATATCACCCGCAATGCCAGCA
ACCTGATCAAGAAGCTCTGTCGCGACAATCCAGCCGAGCGTTTGGGCTAC
CAGCGTGGGGGAATCAGCGAGATCCAAAAGCACAAATGGTTCGATGGCTT
CTATTGGTGGGGCCTGCAGAACTGCACACTGGAACCGCCCATTAAGCCCG
CCGTGAAAAGCGTTGTGGATACAACAAACTTTGATGACTATCCTCCCGAT
CCTGAGGGTCCGCCGCCAGATGATGTCACTGGATGGGACAAGGACTTCGC
AAGCTTTCTAGACCAT

BO05677.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 2685 CG10033-PK 1..2682 17..2698 13410 100 Plus
for-RG 2685 CG10033-PG 1..2682 17..2698 13410 100 Plus
for-RD 2685 CG10033-PD 1..2682 17..2698 13410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
for-RK 3223 CG10033-RK 378..3059 17..2698 13410 100 Plus
for-RG 3826 CG10033-RG 438..3119 17..2698 13410 100 Plus
for-RD 4218 CG10033-RD 830..3511 17..2698 13410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3626337..3627438 1118..17 5510 100 Minus
2L 23513712 2L 3623260..3623881 2347..1726 3110 100 Minus
2L 23513712 2L 3624440..3624678 1575..1337 1195 100 Minus
2L 23513712 2L 3625997..3626217 1338..1118 1105 100 Minus
2L 23513712 2L 3623006..3623196 2535..2345 955 100 Minus
2L 23513712 2L 3622781..3622949 2698..2530 830 99.4 Minus
2L 23513712 2L 3624223..3624374 1726..1575 760 100 Minus
2L 23513712 2L 786790..787109 2292..1973 340 73.8 Minus
Blast to na_te.dros performed 2014-11-27 14:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..6864 242..393 133 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2521 319..405 131 62.5 Plus

BO05677.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:49:13 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
for-RC 330..3020 8..2698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:18 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
for-RG 438..3119 17..2700 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:52 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
for-RC 339..3020 17..2700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:12 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
for-RD 830..3511 17..2700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:12 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3622778..3622943 2536..2700 98 <- Minus
2L 3623006..3623195 2346..2535 100 <- Minus
2L 3623262..3623881 1726..2345 100 <- Minus
2L 3624224..3624373 1576..1725 100 <- Minus
2L 3624440..3624676 1339..1575 100 <- Minus
2L 3625997..3626216 1119..1338 100 <- Minus
2L 3626337..3627438 17..1118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:18 Download gff for BO05677.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3622778..3622943 2536..2700 98 <- Minus
arm_2L 3623006..3623195 2346..2535 100 <- Minus
arm_2L 3623262..3623881 1726..2345 100 <- Minus
arm_2L 3624224..3624373 1576..1725 100 <- Minus
arm_2L 3624440..3624676 1339..1575 100 <- Minus
arm_2L 3625997..3626216 1119..1338 100 <- Minus
arm_2L 3626337..3627438 17..1118 100   Minus

BO05677.pep Sequence

Translation from 16 to 2716

> BO05677.pep
MKIKHYPGKAVDASLSLEGSSAMGALYEANWLRAANQPAAPATTGTKLSR
QSSSAGSSFLIEGISALSKYQMTLENIRQLELQSRDKRIASTIKELSGYR
PSALQHHQQQQMHNVWVAEDQDQEHEELEDASEGKEKLASIQEPPAVNHY
VLDPTERPRVPRPRQQFSVKPPSLRRSQTMSQPPSYATLRSPPKIKENLS
KSSSAYSTFSSAAEDSQDQVVICQQPQRLMAPPPREPPPEPPKRVSKPLS
RSQTSVQRYATVRMPNQTTSFSRSVVRSRDSTASQRRLSLEQAIEGLKLE
GEKAVRQKSPQISPAASSNGSSKDLNGEGFCIPRPRLIVPVHTYARRRRT
GNLKEQSSGGQEEEAEKDGRVEVSREGKYLSTLSGAKVLGELAILYNCQR
TATITAITECNLWAIERQCFQTIMMRTGLIRQAEYSDFLKSVPIFKDLAE
DTLIKISDVLEETHYQRGDYIVRQGARGDTFFIISKGKVRVTIKQQDTQE
EKFIRMLGKGDFFGEKALQGDDLRTANIICESADGVSCLVIDRETFNQLI
SNLDEIKHRYDDEGAMERRKINEEFRDINLTDLRVIATLGVGGFGRVELV
QTNGDSSRSFALKQMKKSQIVETRQQQHIMSEKEIMGEANCQFIVKLFKT
FKDKKYLYMLMESCLGGELWTILRDKGNFDDSTTRFYTACVVEAFDYLHS
RNIIYRDLKPENLLLNERGYVKLVDFGFAKKLQTGRKTWTFCGTPEYVAP
EVILNRGHDISADYWSLGVLMFELLTGTPPFTGSDPMRTYNIILKGIDAI
EFPRNITRNASNLIKKLCRDNPAERLGYQRGGISEIQKHKWFDGFYWWGL
QNCTLEPPIKPAVKSVVDTTNFDDYPPDPEGPPPDDVTGWDKDFASFLDH

BO05677.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
for-PK 894 CG10033-PK 1..894 1..894 4645 100 Plus
for-PG 894 CG10033-PG 1..894 1..894 4645 100 Plus
for-PD 894 CG10033-PD 1..894 1..894 4645 100 Plus
for-PC 894 CG10033-PC 1..894 1..894 4645 100 Plus
for-PJ 934 CG10033-PJ 1..934 1..894 4594 95.7 Plus